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  • Article
  • Open Access
1 Citations
1,676 Views
15 Pages

Utilizing High-Resolution Mass Spectrometry Data Mining Strategy in R Programming Language for Rapid Annotation of Absorbed Prototypes and Metabolites of Gypenosides

  • Xiaoshan Li,
  • Qianru Zhang,
  • Yuqin Li,
  • Lin Qin and ,
  • Di Wu,
  • Daopeng Tan,
  • Jian Xie,
  • Jiajia Wu,
  • Qingping Yang and
  • Yuqi He
  • + 9 authors+ 4 authors

7 February 2025

The rapid and accurate annotation of the complex compounds and metabolites in natural products remains a significant challenge. In this study, we developed an integrated strategy to efficiently and accurately profile both the prototypes and metabolit...

(This article belongs to the Special Issue From a Molecule to a Drug: Chemical Features Enhancing Pharmacological Potential II)
  • Article
  • Open Access
3 Citations
3,822 Views
16 Pages

7 December 2021

This study investigated the scalability of a cognitive multiple-choice test through the Mokken package in the R programming language for statistical computing. A 2019 mathematics West African Examinations Council (WAEC) instrument was used to gather...

  • Article
  • Open Access
1 Citations
1,470 Views
36 Pages

Large Language Models (LLMs), such as GPT (GPT-5.5) by OpenAI and Gemini (Gemini 3.2 Pro) by Google DeepMind, have shown impressive capabilities in text generation and code assistance. This study evaluates their performance in generating R code&mdash...

(This article belongs to the Special Issue Artificial Intelligence-Powered Higher Education: A New Era of Learning, Rights Protection, and Human-Machine Synergy)
  • Article
  • Open Access
15 Citations
8,008 Views
11 Pages

The Use of R and R Packages in Biodiversity Conservation Research

  • Jiangshan Lai,
  • Dongfang Cui,
  • Weijie Zhu and
  • Lingfeng Mao

7 December 2023

R is one of the most powerful programming languages for conducting data analysis, modeling, and visualization. Although it is widely utilized in biodiversity conservation research, the comprehensive trends in R and R package usage and patterns in the...

(This article belongs to the Section Biodiversity Conservation)
  • Article
  • Open Access
23 Citations
14,726 Views
16 Pages

12 March 2023

Air pollution is one of the most challenging and complex problems of our time. This research presents the prediction of air pollutant values based on using an R program with linear regression. The research sample consists of obtained values of air po...

(This article belongs to the Special Issue Emerging Pollutants in Environment and Food Sources: Monitoring, Ecotoxicological Risk and Human Health Effects)
  • Article
  • Open Access
40 Citations
7,062 Views
26 Pages

7 December 2022

In this paper, an image analysis framework is formulated for Landsat-8 Operational Land Imager and Thermal Infrared Sensor (OLI/TIRS) scenes using the R programming language. The libraries of R are shown to be effective in remote sensing data process...

(This article belongs to the Section Earth Sciences)
  • Review
  • Open Access
35 Citations
7,605 Views
20 Pages

Integration of Circular Economy and Urban Metabolism for a Resilient Waste-Based Sustainable Urban Environment

  • Konstantina Ragazou,
  • Georgia Zournatzidou,
  • George Sklavos and
  • Nikolaos Sariannidis

16 October 2024

An unsustainable rate of resource production and consumption is evident in urban environments. The absence of innovative approaches in conjunction with the exponential urbanization and expansion of the global population will inevitably result in subs...

  • Article
  • Open Access
3 Citations
4,455 Views
12 Pages

MStractor: R Workflow Package for Enhancing Metabolomics Data Pre-Processing and Visualization

  • Luca Nicolotti,
  • Jeremy Hack,
  • Markus Herderich and
  • Natoiya Lloyd

Untargeted metabolomics experiments for characterizing complex biological samples, conducted with chromatography/mass spectrometry technology, generate large datasets containing very complex and highly variable information. Many data-processing optio...

(This article belongs to the Special Issue Data Science in Metabolomics)
  • Article
  • Open Access
27 Citations
4,814 Views
48 Pages

Over the last decade, thanks to the availability of historical satellite observations that have begun to be significantly large and thanks to the exponential growth of artificial intelligence techniques, many advances have been made in the detection...

  • Article
  • Open Access
3 Citations
4,914 Views
20 Pages

Fire Risk Sub-Module Assessment under Solvency II. Calculating the Highest Risk Exposure

  • Elena Badal-Valero,
  • Vicente Coll-Serrano and
  • Jorge Segura-Gisbert

2 June 2021

The European Directive 2009/138 of Solvency II requires adopting a new approach based on risk, applying a standard formula as a market proxy in which the risk profile of insurers is fundamental. This study focuses on the fire risk sub-module, framed...

(This article belongs to the Special Issue Spatial Statistics with Its Application)
  • Feature Paper
  • Article
  • Open Access
10 Citations
5,779 Views
17 Pages

Modelling Fire Risk Exposure for France Using Machine Learning

  • Baptiste Gualdi,
  • Emma Binet-Stéphan,
  • André Bahabi,
  • Roxane Marchal and
  • David Moncoulon

4 February 2022

Wildfires generating damage to assets are extremely rare in France. The peril is not covered by the French natural catastrophes insurance scheme (law of 13 July 1982). In the context of the changing climate, Caisse Centrale de Réassurance&mdas...

(This article belongs to the Special Issue Geohazards: Risk Assessment, Mitigation and Prevention)
  • Review
  • Open Access
2 Citations
10,775 Views
26 Pages

13 December 2021

Sexually transmitted diseases refer to clinical syndromes and infections that are acquired and transmitted through sexual activity. Worldwide, more than 340 million cases of sexually transmitted disease occur each year, placing a great burden on indi...

(This article belongs to the Special Issue Electronic Solutions for Artificial Intelligence Healthcare Volume II)
  • Article
  • Open Access
113 Citations
7,182 Views
25 Pages

Machine Learning-Based Gully Erosion Susceptibility Mapping: A Case Study of Eastern India

  • Sunil Saha,
  • Jagabandhu Roy,
  • Alireza Arabameri,
  • Thomas Blaschke and
  • Dieu Tien Bui

28 February 2020

Gully erosion is a form of natural disaster and one of the land loss mechanisms causing severe problems worldwide. This study aims to delineate the areas with the most severe gully erosion susceptibility (GES) using the machine learning techniques Ra...

(This article belongs to the Special Issue Natural Disaster Prediction Based on Intelligent Sensor and Machine Learning)
  • Review
  • Open Access
195 Citations
25,511 Views
25 Pages

The R Language: An Engine for Bioinformatics and Data Science

  • Federico M. Giorgi,
  • Carmine Ceraolo and
  • Daniele Mercatelli

27 April 2022

The R programming language is approaching its 30th birthday, and in the last three decades it has achieved a prominent role in statistics, bioinformatics, and data science in general. It currently ranks among the top 10 most popular languages worldwi...

(This article belongs to the Section Genomics and Proteomics)
  • Article
  • Open Access
12 Citations
7,416 Views
29 Pages

16 January 2023

In this paper, we describe two related scripting methods of cartographic data processing and visualization that provide 2D and 3D mapping of Japan with different algorithm complexity. The first algorithm utilizes Generic Mapping Toolset (GMT), which...

(This article belongs to the Special Issue Feature Papers for Land Innovations – Data and Machine Learning)
  • Review
  • Open Access
18 Citations
8,501 Views
14 Pages

28 June 2020

R is an open-source programming language which gained a central place in the geosciences over the last two decades as the primary tool for research. Now, biometeorological research is driven by the diverse datasets related to the atmosphere and other...

(This article belongs to the Special Issue Challenges in Applied Human Biometeorology)
  • Article
  • Open Access
1 Citations
2,831 Views
12 Pages

22 February 2021

With the recent development of artificial intelligence and data mining technology, various and intelligent vital sign analysis technologies have been developed. Vital sign analysis algorithms and technologies are primarily developed using MATLAB and...

(This article belongs to the Special Issue 10th Anniversary of Applied Sciences: Invited Papers in Applied Biosciences and Bioengineering Section)
  • Technical Note
  • Open Access
14 Citations
10,271 Views
9 Pages

firebehavioR: An R Package for Fire Behavior and Danger Analysis

  • Justin P. Ziegler,
  • Chad M. Hoffman and
  • William Mell

13 July 2019

Wildland fire and ecological researchers use empirical and semi-empirical modeling systems to assess fire behavior and danger. This technical note describes the firebehavioR package, a porting of two fire behavior modeling systems, Crown Fire Initiat...

  • Article
  • Open Access
4 Citations
5,306 Views
15 Pages

3 August 2019

We sought to quantify the effectiveness of a gifted and talented (GT) program, as was provided to university students who demonstrated a talent for learning English as a foreign language (EFL) in China. To do so, we used propensity score matching (PS...

  • Article
  • Open Access
11 Citations
3,835 Views
22 Pages

Accurate pronunciation of speech sounds is essential in communication. As children learn their native language, they refine the movements necessary for intelligible speech. While there is variability in the order of acquisition of speech sounds, ther...

(This article belongs to the Special Issue AI in Knowledge-Based Information and Decision Support Systems)
  • Tutorial
  • Open Access
20 Citations
9,732 Views
21 Pages

5 November 2021

A boundary-layer is a thin fluid layer near a solid surface, and viscous effects dominate it. The laminar boundary-layer calculations appear in many aerodynamics problems, including skin friction drag, flow separation, and aerodynamic heating. A stud...

(This article belongs to the Collection Feature Paper for Mathematical and Computational Fluid Mechanics)
  • Article
  • Open Access
651 Views
22 Pages

29 June 2026

Recent advancements in Large Language Models (LLMs) hold significant promise for reshaping programming education. However, critical instructional challenges such as high failure and dropout rates, insufficient feedback, and inadequate support for stu...

(This article belongs to the Special Issue Explainable Artificial Intelligence Technology and Its Applications, 2nd Edition)
  • Article
  • Open Access
5 Citations
3,910 Views
25 Pages

The integration of large language models (LLMs) such as GitHub Copilot, ChatGPT, and DeepSeek into programming education has introduced a new form of human–AI collaboration. These tools provide real-time code suggestions, debugging assistance,...

(This article belongs to the Special Issue Intelligent Educational Technologies: Core Architectures, Algorithms, and Evidence-Based Systems)
  • Article
  • Open Access
4 Citations
2,658 Views
18 Pages

7 September 2024

The four basic language skills, listening, speaking, reading, and writing play, a crucial role in the development of an individual’s skills in other disciplines. The current study aims to underpin the relationship between language skills and ma...

  • Review
  • Open Access
4 Citations
3,793 Views
20 Pages

Opening New Worlds of Meaning—A Scoping Review of Figurative Language in Autism Spectrum Disorder

  • Bjørn Skogli-Christensen,
  • Kristine Tyldum Lefstad,
  • Marie Florence Moufack and
  • Sobh Chahboun

14 November 2025

Figurative language (metaphor, idiom, irony/sarcasm) is central to pragmatic communication but is frequently challenging for children and adolescents with autism spectrum disorder (ASD). A scoping review was conducted to map pedagogical and clinical...

(This article belongs to the Special Issue Language and Cognitive Development in Autism Spectrum Disorders)
  • Article
  • Open Access
3 Citations
2,409 Views
12 Pages

27 December 2022

This work introduces the concepts of rectangular Menger probabilistic metric (RMPM) space and rectangular Menger probabilistic b-metric (RMPbM) space as generalizations of the Menger probabilistic metric space and the Menger probabilistic b-metric sp...

(This article belongs to the Special Issue Symmetry in Functional Equations: Methods, Applications and Mathematical Models)
  • Article
  • Open Access
82 Citations
14,931 Views
34 Pages

A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity

  • Hector Zenil,
  • Santiago Hernández-Orozco,
  • Narsis A. Kiani,
  • Fernando Soler-Toscano and ,
  • Antonio Rueda-Toicen and
  • Jesper Tegnér
  • + 1 author+ 0 author

15 August 2018

We investigate the properties of a Block Decomposition Method (BDM), which extends the power of a Coding Theorem Method (CTM) that approximates local estimations of algorithmic complexity based on Solomonoff–Levin’s theory of algorithmic...

(This article belongs to the Section Information Theory, Probability and Statistics)
  • Article
  • Open Access
3 Citations
8,069 Views
21 Pages

TESMA: Requirements and Design of a Tool for Educational Programs †

  • Nicolas Guelfi,
  • Benjamin Jahic and
  • Benoît Ries

22 March 2017

Defining and managing teaching programs at universities or other institutions is a complex task for which there is not much support in terms of methods and tools. This task becomes even more critical when the time comes to obtain certifications w.r.t...

(This article belongs to the Section Information Applications)
  • Article
  • Open Access
9 Citations
7,154 Views
13 Pages

R2D2: A Dbpedia Chatbot Using Triple-Pattern Like Queries

  • Haridimos Kondylakis,
  • Dimitrios Tsirigotakis,
  • Giorgos Fragkiadakis,
  • Emmanouela Panteri and ,
  • Alexandros Papadakis,
  • Alexandros Fragkakis,
  • Eleytherios Tzagkarakis,
  • Ioannis Rallis,
  • Zacharias Saridakis and
  • Nikolaos Papadakis
  • + 7 authors+ 2 authors

3 September 2020

Chatbots, also known as conversation agents, are programs that are able to simulate and reproduce an intelligent conversation with humans. Although this type of program is not new, the explosion of the available information and the rapid increase of...

  • Article
  • Open Access
7 Citations
4,146 Views
16 Pages

Automated Grading Method of Python Code Submissions Using Large Language Models and Machine Learning

  • Mariam Mahdaoui,
  • Said Nouh,
  • My Seddiq El Kasmi Alaoui and
  • Khalid Kandali

7 August 2025

Assessment is fundamental to programming education; however, it is a labour-intensive and complicated process, especially in extensive learning contexts where it relies significantly on human teachers. This paper presents an automated grading methodo...

(This article belongs to the Special Issue Trends in Artificial Intelligence-Supported E-Learning)
  • Article
  • Open Access
29 Citations
5,397 Views
18 Pages

An Integer Linear Programming Model to Select and Temporally Allocate Resources for Fighting Forest Fires

  • Jorge Rodríguez-Veiga,
  • María José Ginzo-Villamayor and
  • Balbina Casas-Méndez

20 September 2018

Optimal planning of the amount and type of resources needed for extinguishing a forest fire is a task that has been addressed in the literature, using models obtained from operational research. In this study, a general integer linear programming mode...

(This article belongs to the Section Forest Ecology and Management)
  • Article
  • Open Access
5 Citations
3,756 Views
25 Pages

11 June 2022

In this paper, a parallel Smoothed Finite Element Method (S-FEM) package epSFEM using incremental theory to solve elastoplastic problems is developed by employing the Julia language on a multicore CPU. The S-FEM, a new numerical method combining the...

(This article belongs to the Special Issue Computational Methods and Applications for Numerical Analysis)
  • Article
  • Open Access
1 Citations
1,775 Views
12 Pages

18 June 2024

This article considers arrowhead and diagonal-plus-rank-one matrices in Fn×n where F∈{R,C,H} and where H is a noncommutative algebra of quaternions. We provide unified formulas for fast determinants and inverses for considered matrices. Th...

  • Data Descriptor
  • Open Access
3 Citations
7,068 Views
10 Pages

26 January 2017

This data descriptor introduces data on healthy food supplied by supermarkets in the city of Amsterdam, The Netherlands. In addition to two neighborhood variables (i.e., share of autochthons and average housing values), the data comprises three stree...

(This article belongs to the Special Issue Geospatial Data)
  • Article
  • Open Access
2 Citations
6,844 Views
28 Pages

Despite being fundamental for speech processing, L2 perceptual training often lacks attention in L2 classrooms, especially among English as Foreign Language (EFL) learners navigating complex English phonology. The current study investigates the impac...

(This article belongs to the Special Issue L2 Speech Perception and Production in the Globalized World)
  • Article
  • Open Access
3 Citations
2,828 Views
27 Pages

Exploration and Assessment of Interaction in an Immersive Analytics Module: A Software-Based Comparison

  • Sofia Karam,
  • Raed Jaradat,
  • Michael A. Hamilton,
  • Vidanelage L. Dayarathna and ,
  • Parker Jones and
  • Randy K. Buchanan
  • + 1 author+ 0 author

10 April 2022

The focus of computer systems in the field of visual analytics is to make the results clear and understandable. However, enhancing human-computer interaction (HCI) in the field is less investigated. Data visualization and visual analytics (VA) are us...

(This article belongs to the Topic Extended Reality (XR): AR, VR, MR and Beyond)
  • Article
  • Open Access
13 Citations
5,179 Views
20 Pages

Investigating Outcomes of a Family Strengthening Intervention for Resettled Somali Bantu and Bhutanese Refugees: An Explanatory Sequential Mixed Methods Study

  • Sarah Elizabeth Neville,
  • Kira DiClemente-Bosco,
  • Lila K. Chamlagai,
  • Mary Bunn and ,
  • Jordan Freeman,
  • Jenna M. Berent,
  • Bhuwan Gautam,
  • Abdirahman Abdi and
  • Theresa S. Betancourt
  • + 4 authors+ 0 author

Pre- and post-migration stressors can put resettled refugee children at risk of poor mental health outcomes. The Family Strengthening Intervention for Refugees (FSI-R) is a peer-delivered preventative home visiting program for resettled refugees that...

(This article belongs to the Special Issue Health of Migrant Children)
  • Article
  • Open Access
9 Citations
4,721 Views
16 Pages

Meeting the health needs of migrant and refugee communities is crucial to successful settlement and integration. These communities are often under-served by mental health services. Previous research has demonstrated the effectiveness of a group mindf...

(This article belongs to the Section Health Care Sciences & Services)
  • Article
  • Open Access
5 Citations
3,326 Views
12 Pages

1 September 2023

Immigration, aging, and dementia often result in a triple jeopardy for Asian American older adults. To improve the well-being of Asian American older adults as well as generational bonding, an Intergenerational Grandparent–Grandchild Reminiscen...

(This article belongs to the Section Social Psychology)
  • Review
  • Open Access
7 Citations
2,569 Views
27 Pages

Smart Agri-Region and Value Engineering

  • Raúl Pastor,
  • Pablo G. Rodriguez,
  • Antonio Lecuona and
  • Juan Pedro Cortés

3 June 2025

Agriculture and silviculture offer interesting opportunities for food, energy, and construction sectors, but to transform such raw materials into valuable products, multiple engineering works must be carried out within R&D, innovation projects, a...

(This article belongs to the Special Issue System of Systems Engineering)
  • Review
  • Open Access
5 Citations
5,083 Views
10 Pages

20 December 2023

Achieving research reproducibility is a precarious aspect of scientific practice. However, many studies across disciplines fail to be fully reproduced due to inadequate dissemination methods. Traditional publication practices often fail to provide a...

(This article belongs to the Special Issue Reproducibility in Sleep and Circadian Science)
  • Article
  • Open Access
3 Citations
2,886 Views
12 Pages

8 December 2021

Before the excavation of underground engineering, joints, fissures, and voids already exist in the rock—that is, there are defects in the rock. Due to the existence of these defects, the rock produces plastic deformation, which can lead to inco...

(This article belongs to the Special Issue Numerical Modeling in Civil and Mining Geotechnical Engineering)
  • Article
  • Open Access
21 Citations
7,805 Views
16 Pages

12 June 2023

Fluorescence excitation-emission matrices (EEMs) are a useful tool in aquatic sciences for monitoring and studying the biogeochemistry of organic matter in natural waters and engineered systems. Yet, the interpretation of the wealth of information av...

(This article belongs to the Special Issue Characterization of Organic Matter in Marine and Freshwater Environment)
  • Protocol
  • Open Access
1 Citations
3,082 Views
19 Pages

A Six-Step Protocol for Monitoring Antimicrobial Resistance Trends Using WHONET and R: Real-World Application and R Code Integration

  • Fabio Ingravalle,
  • Antonio Vinci,
  • Marco Ciotti,
  • Carla Fontana and ,
  • Francesca Pica,
  • Emanuele Sebastiani,
  • Clara Donnoli,
  • Martino Guido Rizzo,
  • Dario Tedesco and
  • Massimo Maurici
  • + 8 authors+ 3 authors

2 October 2025

Antimicrobial resistance is a global health issue, and the WHO has made significant efforts in the development of tools for its monitoring. However, such tools are underutilized, due to limited knowledge, technical capacity, and scarcity of economic...

(This article belongs to the Section Public Health Research)
  • Article
  • Open Access
50 Citations
15,107 Views
10 Pages

Phi, Fei, Fo, Fum: Effect Sizes for Categorical Data That Use the Chi-Squared Statistic

  • Mattan S. Ben-Shachar,
  • Indrajeet Patil,
  • Rémi Thériault,
  • Brenton M. Wiernik and
  • Daniel Lüdecke

22 April 2023

In both theoretical and applied research, it is often of interest to assess the strength of an observed association. Existing guidelines also frequently recommend going beyond null-hypothesis significance testing and reporting effect sizes and their...

(This article belongs to the Section D1: Probability and Statistics)
  • Discussion
  • Open Access
5 Citations
3,846 Views
15 Pages

18 December 2019

Pearle (1970) gave an example of a local hidden variables model which exactly reproduced the singlet correlations of quantum theory, through the device of data-rejection: particles can fail to be detected in a way which depends on the hidden variable...

(This article belongs to the Special Issue Entropy: The Scientific Tool of the 21st Century)
  • Feature Paper
  • Article
  • Open Access
16 Citations
2,927 Views
25 Pages

7 June 2024

Creating accurate emission models capable of capturing the variability and dynamics of modern propulsion systems is crucial for future mobility planning. This paper presents a methodology for creating THC and NOx emission models for vehicles equipped...

(This article belongs to the Special Issue Thermal Management of Energy-Saving and New Energy Vehicles: Technology and Application)
  • Feature Paper
  • Article
  • Open Access
1,347 Views
14 Pages

Surface Reading Model via Haptic Device: An Application Based on Internet of Things and Cloud Environment

  • Andreas P. Plageras,
  • Christos L. Stergiou,
  • Vasileios A. Memos,
  • George Kokkonis and ,
  • Yutaka Ishibashi and
  • Konstantinos E. Psannis
  • + 1 author+ 0 author

11 August 2025

In this research paper, we have implemented a computer program thanks to the XML language to sense the differences in image color depth by using haptic/tactile devices. With the use of “Bump Map” and tools such as “Autodesk’s...

(This article belongs to the Special Issue Human-Robot Interaction and Applications: Challenges and Future Perspectives)
  • Article
  • Open Access
14 Citations
9,116 Views
10 Pages

Delphi Method Supported by Forecasting Software

  • Marcin Lawnik and
  • Arkadiusz Banasik

27 January 2020

The Delphi method is one of the basic tools for forecasting values in various types of issues. It uses the knowledge of experts, which is properly aggregated (e.g., in the form of descriptive statistics measures) and returns to the previous group of...

  • Communication
  • Open Access
3 Citations
2,459 Views
9 Pages

STATom@ic: R Package for Automated Statistical Analysis of Omic Datasets

  • Rui S. Treves,
  • Tyler C. Gripshover and
  • Josiah E. Hardesty

11 February 2025

Background: The evolution of “omic” technologies, which measure all biological molecules of a specific type (e.g., genomics), has enabled rapid and cost-effective data acquisition, depending on the technique and sample size. This, however...

(This article belongs to the Section Biostatistics)

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