Diversity — Open Access Journal

Cross-shelf differences in coral reef benthic and fish assemblages are common, yet it is unknown whether these assemblages respond uniformly to environmental disturbances or whether local conditions result in differential responses of assemblages at different shelf positions. Here, we compare changes in the taxonomic and functional composition, and associated traits, of herbivorous reef fish assemblages across a continental shelf, five years before and six months after two severe cyclones and a thermal bleaching event that resulted in substantial and widespread loss of live hard coral cover. Each shelf position maintained a distinct taxonomic assemblage of fishes after disturbances, but the assemblages shared fewer species among shelf positions. There was a substantial loss of species richness following disturbances within each shelf position. Total biomass of the herbivorous fish assemblage increased after disturbances on mid- and outer-shelf reefs, but not on inner-shelf reefs. Using trait-based analyses, we found there was a loss of trait richness at each shelf position, but trait specialisation and originality increased on inner-shelf reefs. This study highlights the pervasiveness of extreme environmental disturbances on ecological assemblages. Whilst distinct cross-shelf assemblages can remain following environmental disturbances, assemblages have reduced richness and are potentially more vulnerable to chronic localised stresses. Full article

The boreal forest in Canada comprises a wide variety of ecosystems, including stabilized (overgrown) sand dunes, often referred to as sand hills. Globally, sandy soils are known for supporting a high diversity of invertebrates, including ants, but little is known for boreal systems. We used pitfall trap sampling in sand hill, aspen parkland and peatland ecosystems to compare their ant diversity and test the prediction that areas with sandy soils have higher invertebrate diversity compared to more mesic/organic soils. Overall, sand hills had ~45% more ant species compared to other sampled ecosystems from Alberta. Similar to other studies, local canopy cover within sand hills was found to be inversely related to ant species richness and diversity. Although sand hills are rare across the region, they are high biodiversity areas for ants, with the sand hills of north-central Alberta having higher species richness of ants compared to other studied areas in Canada. Full article

Coral reef assemblages generally form gradients of spatial structures which are governed by a variety of interacting physical and biological processes that vary in intensity, frequency, and spatial scale. Assessing the structure of contemporary reef assemblages may help to understand future changes and to identify appropriate conservation actions. The spatial distribution and interannual variability (from 2006 to 2008) of coral assemblages were investigated at 10 stations in the southwestern lagoon of New Caledonia, and the strength of the cross-shelf gradient was evaluated. Coral cover, generic richness, and abundance of adult and juvenile assemblages were highly variable within and among the three major reef habitats (fringing, mid-shelf, and barrier reefs). Abundance increased with distance from shore, whereas generic richness and cover were not correlated with shelf position. Assemblage composition was generally related to habitat, even though some mid-shelf and fringing reef assemblages resembled those observed on other habitats. A significant correlation between juvenile and adult distributions was recorded, suggesting that adult assemblages are partly controlled by the short-term history of recruitment patterns. The interannual variation of coral assemblages was far less pronounced, with significant changes only detected at some mid-shelf and barrier reefs, for a few genera characterised by high turn-over. Full article

The peninsula effect is a biological diversity pattern found in peninsulas in which the number of species decreases toward the tip of the peninsula. The geometry hypothesis, as one proposed cause of the peninsula effect, attempts to predict this pattern by examining the peculiarities of peninsular geometry. As peninsulas are characterized by their isolated positions, it has been suggested that a decreased immigration-to-extinction rate is the cause of the decrease in species diversity from the base to the tip of a peninsula. We aimed to test the geometry hypothesis on tree species in the Florida peninsula by modeling the latitudinal abundance pattern using sample-based tree inventory data. We postulated that the current abundance distribution of a species is a ramification of past immigration–extinction dynamics in a peninsula, as well as an important indicator of such dynamics in the future. The latitudinal abundance patterns of 113 tree species in Florida in the southeastern United States were simulated with the Huisman–Olff–Fresco (HOF) model using the USDA Forest Service’s Forest Inventory and Analysis (FIA) database. Evidence species for the geometry hypothesis were then selected if the simulated latitudinal abundance pattern was asymmetric with its abundance maxima occurring within the Florida peninsula (i.e., approximately 31.5° latitude or lower). Our HOF model results found that most species (87% of 113 species) did not experience any steep abundance decline along the Florida peninsula when compared with their general trend across the range, suggesting that the observed diversity pattern of tree species in Florida could merely be a continuation of latitudinal diversity gradients in the southeastern United States, independent of peninsular geometry. Full article

The use of natural variation in stable isotope ratios continues to be used in ecological studies without proper validation through laboratory studies. This study tested the effects of temperature, time, and turnover in the scales of juvenile corn snakes (Elaphe guttata) in a controlled, laboratory environment. Snakes were assigned to four treatment groups (24 °C, 27 °C, 30 °C, and freely thermoregulating), and one snake from each group was sacrificed weekly. Scales from each snake were washed, dried, and analyzed for δD and δ¹⁸O at the Stable Isotope Research Facility for Environmental Research at the University of Utah. The effects of temperature on the turnover of tissues was only significant when comparing the thermoregulating group to the pooled treatment groups (24 °C, 27 °C, and 30 °C) in the δ¹⁸O of scales (p = 0.006). After normalizing data on the δD and δ¹⁸O using percent change for comparison, δ¹⁸O appeared to be turning over at a faster rate than δD as indicated by an analysis of covariance (ANCOVA) test for homogeneity of slopes (F_1,53 = 69.7, p < 0.001). With further testing of assumptions, a modification of our methods could provide information on the composition of drinking water sources in a species that switches between two isotopically distinct sources, such as during seasonal shifts in habitat or migration, and/or estimates of long-term field metabolic rates based on the turnover of these isotopes. Full article

Sponges act as important microhabitats in the marine environment and promote biodiversity by harboring a wide variety of macrofauna, but little is known about the magnitude and patterns of diversity of sponge-associated communities. This study uses DNA barcoding to examine the macrofaunal communities associated with Stylissa carteri in the central Saudi Arabian Red Sea, an understudied ecosystem with high biodiversity and endemism. In total, 146 operational taxonomic units (OTUs) were distinguished from 938 successfully-sequenced macrofauna individuals from 99 sponges. A significant difference was found in the macrofaunal community composition of S. carteri along a cross-shelf gradient using OTU abundance (Bray–Curtis dissimilarity index), with more amphipods associated with offshore sponges and more brittle stars and fishes associated with inshore sponges. The abundance of S. carteri also showed a gradient, increasing with proximity to shore. However, no significant differences in macrofaunal community composition or total macrofauna abundance were observed between exposed and sheltered sides of the reefs and there was no significant change in total macrofauna abundance along the inshore–offshore gradient. As climate change and ocean acidification continue to impact coral reef ecosystems, understanding the ecology of sponges and their role as microhabitats may become more important for understanding their full ramifications for biodiversity. Full article

Mussels and macroalgae have long been recognized as physical ecosystem engineers that modulate abiotic conditions and resources and affect the composition of rocky shore assemblages. Their spatial distributions in the intertidal zone frequently overlap, as many algal species thrive as epibionts on mussel beds. Nonetheless, their potential for combined engineering effects has not been addressed to date. Here we illustrate that Porphyra sp.—a desiccation-resistant macroalga that develops mostly epiphytically onto mussel beds—affects temperature, desiccation levels, and mobile interstitial invertebrates in mussel beds. Specifically, we observed that Porphyra cover (a) reduced temperature at the surface of the mussel bed but not at their base, (b) reduced desiccation both at the surface and base of the mussel bed and, (c) increased the densities of an abundant interstitial species—the amphipod Hyale grandicornis—in several study sites/dates. Additionally, we found that the positive responses of these grazing amphipods to Porphyra were driven by physical habitat modification (engineering) rather than food availability. This suggests that co-engineering by Porphyra and mussels generates abiotic states and focal species responses that would not be predictable from their individual effects. We expect that increased appreciation of co-engineering aids our understanding of complex ecological dynamics. Full article

In a recent paper we published on the weevil fauna preserved in Burmese amber, two newly proposed generic names were subsequently identified as preoccupied names (Elwoodius Clarke & Oberprieler and Platychirus Clarke & Oberprieler). We propose the name Zimmiorhinus as a replacement name for Elwoodius Clarke & Oberprieler and Burmophyletis as a replacement name for Platychirus Clarke & Oberprieler. Full article

Understanding the spatial and temporal distribution of coral assemblages and the processes structuring those patterns is fundamental to managing reef assemblages. Cross-shelf marine systems exhibit pronounced and persistent gradients in environmental conditions; however, these gradients are not always reliable predictors of coral distribution or the degree of stress that corals are experiencing. This study used information from government, industry and scientific datasets spanning 1980–2017, to explore temporal trends in coral cover in the geographically complex system of the Dampier Archipelago, northwest Australia. Coral composition at 15 sites surveyed in 2017 was also modelled against environmental and spatial variables (including turbidity, degree heat weeks, wave exposure, and distance to land/mainland/isobath) to assess their relative importance in structuring coral assemblages. High spatial and temporal heterogeneity was observed in coral cover and recovery trajectories, with reefs located an intermediate distance from the shore maintaining high cover over the past 20 years. The abundance of some prominent genera in 2017 (Acropora, Porites, and Turbinaria spp.) decreased with the distance from the mainland, suggesting that inshore processes play an important role in dictating the distribution of these genera. The atypical distributions of these key reef-building corals and spatial heterogeneity of historical recovery trajectories highlight the risks in making assumptions regarding cross-shelf patterns in geographically complex systems. Full article

The structure and dynamics of coral reef environments vary across a range of spatial scales, with patterns of associated faunal assemblages often reflecting this variability. However, delineating drivers of biological variability in such complex environments has proved challenging. Here, we investigated the assemblage structure and diversity of parrotfishes—a common and ecologically important group—across 6° of latitude on the Northern Great Barrier Reef (GBR), Australia. Parrotfish abundance and biomass were determined from stereo-video surveys across 82 sites spanning 31 reefs and assessed against geographic, biophysical, and management-related factors in a multivariate framework to determine major drivers and associated scales of assemblage structure. Large cross-shelf variation in parrotfish assemblages pervaded along the entire Northern GBR, with distinct assemblages associated with sheltered and exposed reefs. Species abundances and diversity generally decreased with decreasing latitude. The gradient of explicit predator biomass associated with management zoning had no effect on parrotfish assemblage structure, but was positively correlated with parrotfish diversity. Our results highlight the ubiquitous presence of cross-shelf variation, where the greatest differences in parrotfish community composition existed between sheltered (inner and mid shelf) and exposed (outer shelf) reef systems. Prior attempts to explain linkages between parrotfishes and fine-scale biophysical factors have demonstrated parrotfishes as habitat generalists, but recent developments in nutritional ecology suggest that their cross-shelf variation on the GBR is likely reflective of benthic resource distribution and species-specific feeding modes. Full article

Roads exert multiple effects on wildlife, from animal mortality, habitat and population fragmentation, to modification of animal reproductive behaviour. Amphibians are the most frequently road-killed animal group. Many studies have attempted to analyse the factors driving amphibian casualties on roads, but these factors are limited to the roads themselves (e.g., traffic, type of roads, roads crossing water bodies) or to structures along them (e.g., ditches, walls). Sometimes, roadkills are related to land use along the roads. We analysed the influence of landscape factors on roadkill hotspots at the national level (Slovenia). Specifically, we aimed at: (1) identifying hotspots of roadkills, (2) analysing whether records of amphibian presence on roads are related to the distribution of water bodies and (3) analysing which factors (proximity to water bodies or human factors) explain the distribution of hotspots. Hotspots were identified by Malo’s method. Roadkills were modelled with Maxent for the first time in Slovenia. The relationships between amphibian presence and hotspots with factors were analysed with GLM. A total of 237 road sections were identified as hotspots, corresponding to 8% of road sections and containing 90% of road-killed individuals. Proximity to forests, meadows and agricultural land were the most important variables in Maxent models. The number of roadkills depended on the proximity to agricultural land, forests, water bodies and wetland areas, while the number of hotspots additionally depended on the proximity to urban settlements. Full article

Oscillations of periods with low and high temperatures during the Quaternary in the northern hemisphere have influenced the genetic composition of birds of the Palearctic. During the last glaciation, ending about 12,000 years ago, a wide area of the northern Palearctic was under lasting ice and, consequently, breeding sites for most bird species were not available. At the same time, a high diversity of habitats was accessible in the subtropical and tropical zones providing breeding grounds and refugia for birds. As a result of long-term climatic oscillations, the migration systems of birds developed. When populations of birds concentrated in refugia during ice ages, genetic differentiation and gene flow between populations from distinct areas was favored. In the present study, we explored the current genetic status of populations of the migratory European bee-eater. We included samples from the entire Palearctic-African distribution range and analyzed them via mitochondrial and nuclear DNA markers. DNA data indicated high genetic connectivity and panmixia between populations from Europe, Asia and Africa. Negative outcomes of Fu’s Fs and Tajima’s D tests point to recent expansion events of the European bee-eater. Speciation of Merops apiaster started during the Pliocene around three million years ago (Mya), with the establishment of haplotype lineages dated to the Middle Pleistocene period circa 0.7 Mya. M. apiaster, which breed in Southern Africa are not distinguished from their European counterparts, indicating a recent separation event. The diversification process of the European bee-eater was influenced by climatic variation during the late Tertiary and Quaternary. Bee-eaters must have repeatedly retracted to refugia in the Mediterranean and subtropical Africa and Asia during ice ages and expanded northwards during warm periods. These processes favored genetic differentiation and repeated lineage mixings, leading to a genetic panmixia, which we still observe today. Full article

Blue mussels (Mytilus edulis) are ecosystem engineers with strong effects on species diversity and abundances. Mussel beds appear to be declining in the Gulf of Maine, apparently due to climate change and predation by the invasive green crab, Carcinus maenas. As mussels die, they create a legacy of large expanses of shell biogenic structure. In Maine, USA, we used bottom traps to examine effects of four bottom cover types (i.e., live mussels, whole shells, fragmented shells, bare sediment) and wind condition (i.e., days with high, intermediate, and low values) on flow-related ecosystem processes. Significant differences in transport of sediment, meiofauna, and macrofauna were found among cover types and days, with no significant interaction between the two factors. Wind condition had positive effects on transport. Shell hash, especially fragmented shells, had negative effects, possibly because it acted as bed armor to reduce wind-generated erosion and resuspension. Copepods had the greatest mobility and shortest turnover times (0.15 d), followed by nematodes (1.96 d) and the macrofauna dominant, Tubificoides benedeni (2.35 d). Shell legacy effects may play an important role in soft-bottom system responses to wind-generated ecosystem processes, particularly in collapsed mussel beds, with implications for recolonization, connectivity, and the creation and maintenance of spatial pattern. Full article

Species distribution models (SDMs) are popular tools for predicting the geographic ranges of species. It is common practice to use georeferenced records obtained from online databases to generate these models. Using three species of Phaedranassa (Amaryllidaceae) from the Northern Andes, we compare the geographic ranges as predicted by SDMs based on online records (after standard data cleaning) with SDMs of these records confirmed through extensive field searches. We also review the identification of herbarium collections. The species’ ranges generated with corroborated field records did not agree with the species’ ranges based on the online data. Specifically, geographic ranges based on online data were significantly inflated and had significantly different and wider elevational extents compared to the ranges based on verified field records. Our results suggest that to generate accurate predictions of species’ ranges, occurrence records need to be carefully evaluated with (1) appropriate filters (e.g., altitude range, ecosystem); (2) taxonomic monographs and/or specialist corroboration; and (3) validation through field searches. This study points out the implications of generating SDMs produced with unverified online records to guide species-specific conservation strategies since inaccurate range predictions can have important consequences when estimating species’ extinction risks. Full article

During the day, hummingbirds quickly metabolize floral nectar to fuel high metabolic demands, but are unable to feed at night. Though stored fat is the primary nocturnal metabolic fuel, it has been suggested that hummingbirds store nectar in their crop to offset fat expenditure in the night or to directly fuel their first foraging trip in the morning. We examine the use of crop-stored sugar in the nocturnal energy budget of ruby-throated hummingbirds (Archilochus colubris) using respirometry and ¹³C stable isotope analysis. Hummingbirds were fed a ¹³C-enriched sugar solution before lights-out and held in respirometry chambers overnight without food. Respirometry results indicate that the hummingbirds metabolized the sugar in the evening meal in less than 2 h, and subsequently primarily catabolized fat. Breath stable isotope signatures provide the key insight that the hummingbirds converted a substantial portion of an evening meal to fats, which they later catabolized to support their overnight metabolism and spare endogenous energy stores. These results show that the value of a hummingbird’s evening meal depends on how much of this energy was converted to fat. Furthermore, this suggests that evening hyperphagia is an important energy maximization strategy, especially during energetically expensive periods such as migration or incubation. Full article

The measurement of stable isotopes in ‘bulk’ animal and plant tissues (e.g., muscle or leaf) has become an important tool for studies of functional diversity from organismal to continental scales. In consumers, isotope values reflect their diet, trophic position, physiological state, and geographic location. However, interpretation of bulk tissue isotope values can be confounded by variation in primary producer baseline values and by overlapping values among potential food items. To resolve these issues, biologists increasingly use compound-specific isotope analysis (CSIA), in which the isotope values of monomers that constitute a macromolecule (e.g., amino acids in protein) are measured. In this review, we provide the theoretical underpinnings for CSIA, summarize its methodology and recent applications, and identify future research directions. The key principle is that some monomers are reliably routed directly from the diet into animal tissue, whereas others are biochemically transformed during assimilation. As a result, CSIA of consumer tissue simultaneously provides information about an animal’s nutrient sources (e.g., food items or contributions from gut microbes) and its physiology (e.g., nitrogen excretion mode). In combination, these data clarify many of the confounding issues in bulk analysis and enable novel precision for tracing nutrient and energy flow within and among organisms and ecosystems. Full article

Ecosystem engineers that serve as foundation species shape the ecology and behavior of the species which depend on them. As species shift their geographic ranges into ecosystems they have not previously inhabited, it is important to understand how interactions with novel foundation species alter their behavior. By employing behavioral assays and morphological analyses, we examined how individual morphology and foundation species structure impact the ritualistic aggression behavior of the range shifting mangrove tree crab Aratus pisonii between its historic and colonized habitats. Structure of the foundation species of the colonized salt marsh ecosystem increases the incidence and risk of this behavior over the historic mangrove habitat, potentially negating benefits of ritualizing aggression. Further, docks within the salt marsh, which are structurally analogous to mangroves, mitigate some, but not all, of the increased costs of performing ritualized aggression. Crabs in the salt marsh also had relatively larger claws than conspecifics from the dock and mangrove habitats, which has implications for the risk and outcomes of ritualized interactions. These changes to morphology and behavior highlight the impacts that foundation species structure can have on the morphology, ecology, and behavior of organisms and the importance of studying these impacts in range shifting species. Full article

Invasive alien species are widespread in freshwater systems compared to terrestrial ecosystems. Among crustaceans, crayfish in particular have been widely introduced and are considered a major threat to freshwater ecosystem functioning. New emerging techniques for detecting and controlling invasive crayfish and protecting endangered native species are; thus, now highly desirable and several are under evaluation. Important innovations have been developed in recent years for detection of both invasive and native crayfish, mainly through eDNA, which allows for the detection of the target species even at low abundance levels and when not directly observable. Forecasting models have also moved towards the creation of realistic invasion scenarios, allowing effective management plans to be developed in advance of invasions. The importance of monitoring the spread and impacts of crayfish and pathogens in developing national data and research networks is emphasised; here “citizen science” can also play a role. Emerging techniques are still being considered in the field of invasive crayfish control. Although for decades the main traditional techniques to manage invasive crayfish were solely based on trapping, since 2010 biological, biocidal, autocidal controls and sexual attractants, monosex populations, RNA interference, the sterile male release technique and oral delivery have all also been investigated for crayfish control. In this review, ongoing methodologies applied to the detection and management of invasive crayfish are discussed, highlighting their benefits and limitations. Full article