Diversity

The Biodiversity and Bioindicators research group (BiBIO), based at the Natural Sciences Museum of Granollers, has coordinated four long-term faunal monitoring programmes based on citizen science over more than two decades in Catalonia (NE Spain). We summarize the historical progress of these programmes, describing their main conservation outputs, the challenges overcome, and future directions. The Catalan Butterfly Monitoring Scheme (CBMS) consists of a network of nearly 200 recording sites where butterfly populations have been monitored through visual censuses along transects for nearly three decades. This programme provides accurate temporal and spatial changes in the abundance of butterflies and relates them to different environmental factors (e.g., habitat and weather conditions). The Bat Monitoring Programme has progressively evolved to include passive acoustic monitoring protocols, as well as bat box-, underground- and river-bat surveys, and community ecological indices have been developed to monitor bat responses at assemblage level to both landscape and climatic changes. The Monitoring of common small mammals in Spain (SEMICE), a common small mammal monitoring programme with almost 80 active live-trapping stations, provides information to estimate population trends and has underlined the relevance of small mammals as both prey (of several predators) and predators (of insect forest pests). The Dormouse Monitoring Programme represents the first monitoring programme in Europe using specific nest boxes for the edible dormouse, providing information about biological and demographic data of the species at the southern limit of its distribution range. The combination and complementarity of these monitoring programmes provide crucial data to land managers to improve the understanding of conservation needs and develop efficient protection laws. Full article

Soil properties affect plant growth and cause variation in leaf functional traits. Lycium ruthenicum Murray is one of the desert dominant shrubs and halophytes in the lower reaches of Heihe River, Northwest China. We analyzed the trade-off relationships of 14 leaf functional traits of eight L. ruthenicum populations growing at varying distances from the river and discussed the effects that soil properties have on leaf functional traits. The results showed that: Lower leaf nitrogen (N) content indicated that L. ruthenicum was located at the slow investment–return axis of the species resource utilization graph. Compared with non-saline and very slightly saline habitats, populations of slightly saline habitats showed a higher carbon to nitrogen ratio (C:N). Redundancy analysis (RDA) revealed a relatively strong relationship between leaf functional traits and soil properties, the first RDA axis accounted for 70.99 and 71.09% of the variation in 0–40 and 40–80 cm of soil properties. Relative importance analysis found that in the 0–40 cm soil layer, leaf traits variations were mainly influenced by soil moisture (SWC), HCO₃⁻ and CO₃²⁻ ions content, while leaf traits variations in the 40–80 cm soil layer were mainly influenced by HCO₃⁻ and SO₄²⁻. L. ruthenicum has a foliar resource acquisition method and a resource conservation trade-off with a flexible life history strategy in habitats with drought and salinity stress. In the shallow soil layers, water affects leaf traits variation greater than salt , and in both shallow and deep soil layers, HCO₃⁻ plays a dominant role on leaf traits. This study provides insights into the adversity adaptation strategies of desert plants and the conservation and restoration of arid-saline ecosystems. Full article

Systematic, practicable, and global solutions are required for insect monitoring to address species decline and pest management concerns. Compact frequency-modulated continuous-wave (FMCW) radar can facilitate these processes. In this work, we evaluate a 60 GHz low-range FMCW radar device for its applicability to insect monitoring. Initial tests showed that radar parameters should be carefully selected. We defined optimal radar configuration during the first experiment and developed a methodology for individual target observation. In the second experiment, we tried various individual-insect targets, including small ones. The third experiment was devoted to mass-insect-target detection. All experiments were intentionally conducted in very uncertain conditions to make them closer to a real field situation. A novel parameter, the Sum of Sequential Absolute Magnitude Differences (SSAMD), has been proposed for uncertainty reduction and noisy data processing. SSAMD enables insect target presence detection and biomass estimation. We have defined ranges of SSAMD for distinguishing noise, insects, and other larger targets (e.g., bats, birds, or other larger objects). We have provided evidence of the high correlation between insect numbers and the average of SSAMD values proving the biomass estimation possibility. This work confirms that such radar devices can be used for insect monitoring. We plan to use the evaluated system assembled with a light trap for real fieldwork in the future. Full article

This is a study on the leaf beetle subgenus Cryptocephalus Geoffroy, 1762 from China, with the particular emphasis upon the species-group classification of the subgenus and the taxonomy of the Cryptocephalus heraldicus species group. A new key is compiled to all the species groups found in China. Four new species are described from China: Cryptocephalus (Cryptocephalus) biordopunctatus sp. nov. from Yunnan, C. hani sp. nov. from Shanxi, Hubei, Shaanxi and Gansu, C. incisodentatus sp. nov. from Sichuan and Yunnan, and C. nigroflavusiventerus sp. nov. from Yunnan. Three species are found for the first time in China: C. lacosus Pic, 1922, C. nigriceps Allard, 1891 and C. rajah Jacoby, 1908. The species C. nigrolimbatus Jacoby, 1890 is transferred from the subgenus Burlinius Lopatin to this subgenus and assigned to the Cryptocephalus heraldicus group. The species number of this group is now 30 in total according to our result of taxonomic review. A key to all the mainland China species of this species group is provided as well as high quality color images and line drawings of adult habitus, aedeagus, and other important structures. All the types of the new species are deposited in the collection of Institute of Zoology, Chinese Academy of Sciences (IZ-CAS). Full article

The symbiotic relationship between the crab Trapezia spp. and pocilloporid corals has been characterized as obligate. Although this relationship is considered common and has been widely registered within the distribution areas of these corals, the initiation of this symbiotic relation and its potential persistence throughout the life cycle of the crustacean is still poorly described. To understand the Trapezia–Pocillopora symbiosis, determining the time and conditions when Trapezia recruits a coral colony and the factors influencing this process are key. Thus, in the present study, healthy, small and unrecruited coral fragments were attached to the substrates (using cable ties) of nearby adult Pocillopora colonies. All fragments were monitored for two years to measure their growth and size at the first evidence of Trapezia crab recruitment, as well as the abundance and permanence of the crabs on the coral fragments. Results showed a relation between the space available (coral volume) and crab recruitment as an increase in substrate complexity is required to provide protection for the crabs and hence maintain the symbiosis, while abiotic conditions such as sea temperature and the distance of the fragments from the adult coral colonies seemingly did not affect the recruitment process. In addition, crabs are able to move between colonies, thus discarding the theory that once recruited, crabs are obligate residents on this specific colony. Full article

The Bronze Age in Europe is characterized by major socio-economic changes, including certain aspects of animal husbandry. In the Alpine region archaeozoological data, though not very abundant, reveal that cattle were the most important domestic animals in this time period. They were probably used differently in the lowlands than at higher altitude, traction became more important and people increasingly exploited them for dairy products rather than for meat. Thus, a crucial question in this context is whether these major events are accompanied by changes in genetic diversity of cattle. Here we report partial mtDNA d-loop data (320 bp) obtained by PCR from 40 alpine cattle excavated at different sites in South Tyrol, Italy, and Grisons, Switzerland. Most cattle belong to the main European taurine T3 haplogroup, but a few members of T2 and Q haplogroups were identified. Moreover, genetic diversity measures and population genetic statistics indicate different cattle histories at different sites, including bottlenecks and potential admixture. However, Bronze Age Alpine cattle appear to be linked to modern rural cattle mainly from Italy. Full article

Comparative phylogeography has become a powerful approach in exploring hidden or cryptic diversity within widespread species and understanding how historical and biogeographical factors shape the modern patterns of their distribution. Most comparative phylogeographic studies so far focus on terrestrial and vertebrate taxa, while aquatic invertebrates (and especially freshwater invertebrates) remain unstudied. In this article, we explore and compare the patterns of molecular diversity and phylogeographic structure of four widespread freshwater copepod crustaceans in European water bodies: the harpacticoids Attheyella crassa, Canthocamptus staphylinus and Nitokra hibernica, and the cyclopoid Eucyclops serrulatus, using sequence data from mtDNA COI and nuclear ITS/18S rRNA genes. The three taxa A. crassa, C. staphylinus and E. serrulatus each consist of deeply diverged clusters and are deemed to represent complexes of species with largely (but not completely) non-overlapping distributions, while in N. hibernica only little differentiation was found, which may however reflect the geographically more restricted sampling. However, the geographical patterns of subdivision differ. The divisions in A. crassa and E. serrulatus follow an east–west pattern in Northern Europe whereas that in C. staphylinus has more of a north–south pattern, with a distinct Fennoscandian clade. The deep mitochondrial splits among populations of A. crassa, C. staphylinus and E. serrulatus (model-corrected distances 26–36%) suggest that divergence of the lineages predate the Pleistocene glaciations. This study provides an insight into cryptic diversity and biogeographic distribution of freshwater copepods. Full article

Mediterranean central Chile is globally recognized as a hotspot for terrestrial biodiversity due to its high endemism and massive habitat loss. However, within the rural landscape of central Chile, significant extents of natural areas remain, especially on less productive, steep slopes, and vegetation strips extending from the surrounding hills to agricultural areas. Accordingly, vegetation strips or corridors, within lowland farms, constitute key elements to support the conservation of biodiversity in rural landscapes. To assess the ecological performance of corridors in 22 commercials vineyards in central Chile, we characterized them in terms of width-, length-, area-, and perimeter-to-area ratios, as well as the number of connections with natural areas. Based on a set of previously defined ecological indicators (species, functional groups, and structural components), we compared their occurrence in corridors within vineyards and in the surrounding natural areas. We evaluated the effects of corridor attributes on the occurrence of the selected ecological indicators, using a generalized linear mixed model with each vineyard as a random factor. The area, width, and length of vegetation corridors varied widely (1.2–86.3 ha, 10.5–95 m, and 380–5000 m, respectively). We found significant differences in the occurrence of indicators between corridors and natural areas. All sampled ecological indicators in corridors showed a negative relationship with the distance to the nearest natural area. Vegetation strips within vineyards represent important opportunities for biodiversity conservation that significantly enhance habitat quality in the agricultural landscape for biodiversity and habitat connectivity. Full article

Ecotypes are the result of ecological differentiation at the early stages of speciation. Adaptation to soil conditions offers arguably the best examples of local adaptation in plants. Two sympatric ecotypes, with either a red or green abaxial leaf surface, were found without clear geographical isolation in Phalaenopsis pulcherrima, a Southeast Asia endemic and endangered orchid. The soil of the red leaf ecotype has a higher water content and nutrient content than the green ecotype. What is the genetic structure of the two ecotypes? Is there complete or partial reproductive isolation between the two ecotypes? In this work, leaf reflection of the two ecotypes in P. pulcherrima were compared, to illustrate their difference in leaf color. The genetic differentiation between two ecotypes was examined, using ISSR and SRAP markers to determine the genetic structure of the populations. Our results showed that the green ecotype had reflectance spectrum peaks at 530 nm and 620 nm, while in the red ecotype, the peak at 530 nm was absent. A total of 165 ISSR and SRAP loci showed a high level of genetic diversity within the green ecotype, and analyses of the population structure revealed two genetic clusters that corresponded to the red and green ecotypes. The percentage of variation between the two ecotypes (24.55%) was greater than the percentage of variation among the populations (16.54%)—indicating partial reproductive isolation, high genetic differentiation, and that ecological differentiation has been more important than geographical barriers among populations within ecotypes. Most pairwise F_ST values between the populations within either ecotype on Hainan Island were less than 0.15; however, the F_ST between both the Thai and Malaysian populations and the Hainan Island population was greater than 0.25, due to South China sea isolation. Ecotypic differentiation is an important part of speciation; therefore, we must take into account the axes along which lineages sort, when formulating protection strategies. Full article

The major component of the animal egg yolk is the lipoglycoprotein vitellin, derived from its precursor vitellogenin (VTG), which is produced species-specifically in decapod crustaceans in the hepatopancreas and/or in the ovary of reproductive females. Previous studies on Procambarus clarkii vitellogenesis report the existence of two single VTGs. Here, from a multiple tissue transcriptome including ovaries and hepatopancreas of P. clarkii, we characterized four different VTG and two VTG-like transcriptomes encoding for the discoidal lipoprotein-high density lipoprotein/β-glucan binding protein (dLp/HDL-BGBP). The relative expression of the various genes was evaluated by quantitative Real-Time PCR in both the ovary and hepatopancreas of females at different reproductive stages (from immature until fully mature oocytes). These studies revealed tissue-specificity and a reproductive stage related expression for the VTGs and a constitutive expression in the hepatopancreas of dLp/HDL-BGBP independent from the reproductive stage. This study may lead to more detailed study of the vitellogenins, their transcription regulation, and to the determination of broader patterns of expression present in the female hepatopancreas and ovary during the vitellogenesis. These findings provide a starting point useful for two different practical aims. The first is related to studies on P. clarkii reproduction, since this species is highly appreciated on the market worldwide. The second is related to the study of new potential interference in P. clarkii reproduction to delay or inhibit the worldwide spread of this aggressively invasive species. Full article

Global change is manifesting new and potent pressures that may determine the relative influence of top-down and bottom-up forces on the productivity of plants that undergird coastal ecosystems. Here, I present a meta-analysis conducted to assess how herbivory, nitrogen enrichment, and elevated salinity influence plant productivity according to the salinity regimes of coastal ecosystems. An examination of 99 studies representing 288 effect sizes across 76 different plant species revealed that elevated salinity negatively affected productivity across all environments, but particularly in freshwater ecosystems. Nitrogen enrichment, on the other hand, positively affected productivity. In agreement with the plant stress hypothesis, herbivory had the greatest negative impact in saline habitats. This trend, however, appears to reverse with nitrogen enrichment, with maximum losses to herbivory occurring in brackish habitats. These findings demonstrate that multiple stressors can yield complex, and sometimes opposite outcomes to those arising from individual stressors. This study also suggests that trophic interactions will likely shift as coastal ecosystems continue to experience nutrient enrichment and sea level rise. Full article

Islands have been disproportionately affected by the current biodiversity crisis. In island biotas, one of the most recurrent anthropic alterations is species introduction. Invasion of exotic species may represent a major threat for island biotas, because invasive species may change species composition and simplify community dynamics. We investigated diversity patterns of native and introduced species in native and exotic forests of Terceira Island (Azores, Portugal) by using diversity profiles based on Hill numbers. Use of diversity profiles allows for a complete characterization of the community diversity because they combine information on species richness, rarity, and dominance. We found that native forest remnants are crucial for the maintenance of endemic Azorean arthropod diversity. However, we also found that some lowland patches of exotic forests can sustain populations of rare endemic species. Our findings reinforce the importance of the few and small remnants of native forests, which are a pillar to the conservation of Azorean endemic arthropods. However, areas occupied by exotic forests, whether they are large and contiguous or small and isolated, close to native forests, or embedded in a matrix of agriculture activities, can also play a role in the conservation of native species, including endemics. Full article

Fragmented and degraded DNA is pervasive among museum specimens, hindering molecular phylogenetics and species identification. Mini-barcodes, 200–300-base-pair (bp) fragments of barcoding genes, have proven effective for species-level identification of specimens from which complete barcodes cannot be obtained in many groups, but have yet to be tested in arachnids. The present study investigated the efficacy of mini-barcodes combined with longer sequences of the Cytochrome c Oxidase Subunit I (COI) gene in the systematics of the arboreal Neotropical ‘thorellii’ clade of Centruroides Marx, 1890 bark scorpions (Buthidae, C.L. Koch 1837), the species of which have proven to be difficult to identify and delimit due to their similar morphology. The phylogeny of 53 terminals, representing all nine species of the clade and representative species belonging to related clades of Centruroides, rooted on Heteroctenus junceus (Herbst, 1800) and based on up to 1078 base pairs of COI and 112 morphological characters, is presented to test the monophyly of the clade and the limits of its component species. The results support the recognition of nine species of the ‘thorellii’ clade, in accordance with a recent taxonomic revision, and highlight the efficacy of mini-barcodes for identifying morphologically similar cryptic species using specimens of variable age and preservation. Full article

As anuran biodiversity quickly declines, it is important to understand local patterns of anuran occurrence. However, the limitations of traditional sampling methods make anuran biodiversity surveys inadequate. Tropical environments are rich in anuran species, which makes biodiversity measurements more difficult. Therefore, it is important to develop a rapid, inexpensive and nondestructive method to measure anuran biodiversity in tropical environments. We used eDNA metabarcoding to measure anuran diversity at 288 sites in 18 regions of Hainan Island. We also used traditional methods and compared the results with those obtained through the eDNA metabarcoding methods. We detected 9 anuran species by traditional sampling methods. We produced 626 million reads by eDNA metabarcoding and assigned them to 15 anuran species. Therefore, eDNA metabarcoding can be used for rapid and large-scale anuran biodiversity surveys. Full article

Despite the ubiquity of disease seasonality, mechanisms behind the fluctuations in seasonal diseases are still poorly understood. Avian hemosporidiosis is increasingly used as a model for ecological and evolutionary studies on disease dynamics, but the results are complex, depending on the focus (hosts, parasites, vectors) and scale (individuals, community, populations) of the study. Here, we examine the local diversity of haemosporidian parasites and the seasonal patterns of infections, parasite richness, and diversity in a natural woodland bird community in Slovakia. In 35 avian species, we detected 111, including 19 novel, haemosporidian cytochrome b lineages. The highest numbers of lineages were detected during spring and autumn, corresponding with higher avian species richness and infection prevalence in the avian community during these periods of time. Nevertheless, the haemosporidian community in the local breeders in summer was relatively stable, Haemoproteus lineages dominated in the local avian haemosporidian community, and only few parasite lineages were abundant within each genus. While prevailing Leucocytozoon infections in spring suggest that the majority of sampled birds wintered in the Mediterranean region, Plasmodium infections in spring can be due to relapses in reproductively active short-distance migrants. Multiple haemosporidian infections, both intra- and inter-generic ones, were common in the local avian community. Infection intensity peaked during summer and tended to be higher in older birds, pointing to the role of supressed immunity in reproductively active birds. Full article

The evolutionary trajectories of insects and angiosperms appear to be intimately interconnected. Increases in the diversity of phytophagous beetles and angiosperms co-occur in the Mesozoic fossil record, and there is fossil evidence of pollinivory and pollination by insects, both in flowering plants and in gymnosperms. The oldest records of angiosperm pollination indicate flies as pollen vectors. A basal group of angiosperms, the order Magnoliales, has retained plesiomorphic characters such as dozens of pistils and stamens spiraling around the receptacle. In a family of this order, Annonaceae, over 90% of species are pollinated by beetles. In many Annonaceae species, flowers display wide spaces, referred to as floral chambers, where beetles can find shelter from weather conditions and predators, food in the form of pollen and tissues, and a mating site. Two basic types of floral chambers can be distinguished: small chambers visited by small beetles (Nitidulidae, Staphylinidae, Chrysomelidae, and Curculionidae) with diurnal and/or nocturnal activity and large and thermogenic floral chambers visited by beetles of the tribe Cyclocephalini (Scarabaeoidea, Melolonthidae). In the latter case, the heat that the flowers produce may serve as a resource for the beetles that visit them, resulting in smaller endothermy costs for the scarabs. This study reviewed the literature including PhD and MSc theses on cantharophilous Annonaceae in the Cerrado. In this biome, both types of associations are found, although cantharophilous Annonaceae represent a small portion of the plant species (<5%). Cantharophilous Annonaceae in the Cerrado share attributes according to the beetles that pollinate them: species pollinated by small beetles, for instance, may flower throughout the year, whereas Annonaceae pollinated by Cyclocephalini normally flower in the beginning of the rainy season (October/November), in synchrony with the phenological patterns of their pollinators. Cantharophilous Annonaceae flowers, regardless of their size, tend to have light colors and sweet and fruity odors. In addition to the lack of studies on the attraction of beetles by these floral characters, the taxonomic composition of the beetles that pollinate Annonaceae in the Cerrado is poorly known. This review attempts to discuss, in light of what has already been published, potential fields of investigation concerning pollinating beetles’ behavior and evolution. Full article

Although DNA metabarcoding of pollen mixtures has been increasingly used in the field of pollination biology, methodological and interpretation issues arise due to its high sensitivity. Filtering or maintaining false positives, contaminants, and rare taxa or molecular features could lead to different ecological results. Here, we reviewed how this choice has been addressed in 43 studies featuring pollen DNA metabarcoding, which highlighted a very high heterogeneity of filtering methods. We assessed how these strategies shaped pollen assemblage composition, species richness, and interaction networks. To do so, we compared four processing methods: unfiltering, filtering with a proportional 1% of sample reads, a fixed threshold of 100 reads, and the ROC approach (Receiver Operator Characteristic). The results indicated that filtering impacted species composition and reduced species richness, with ROC emerging as a conservative approach. Moreover, in contrast to unfiltered networks, filtering decreased network Connectance and Entropy, and it increased Modularity and Connectivity, indicating that using cut-off thresholds better describes interactions. Overall, unfiltering might compromise reliable ecological interpretations, unless a study targets rare species. We discuss the suitability of each filtering type, plead for justifying filtering strategies on biological or methodological bases and for developing shared approaches to make future studies more comparable. Full article

Distribution and abundance of common parasitic nematodes in marine fishes is not well documented in many geographic regions. Understanding the influence of large-scale environmental changes on infection rates of fish by nematodes requires quantitative assessments of parasite abundance for multiple host species. We collected samples of two species of cod and eight species of rockfish (total of 232 specimens) from waters near Kodiak Island, Alaska, USA during Spring and Summer of 2015, and dissected and recorded all internal nematode parasites. We quantified the prevalence and intensity of nematode parasites in the ten host species, and tested for differences in prevalence among host species. We found three species of nematode: Anisakis simplex, sensu lato (Van Thiel), Pseudoterranova decipiens, sensu lato (Krabbe), and Hysterothylacium sp. (Ward and Magath). Eighty-two percent of the examined fish were infected with at least one parasitic nematode. The overall prevalence of P. decipiens, A. simplex, and Hysterothylacium sp. was 56%, 62%, and 2%, respectively. Anisakis simplex and P. decipiens were abundant and present in all ten species of host fish examined, whereas Hysterothylacium sp. was rare and found in only five of the host fish species. Prevalence and mean intensity of P. decipiens and A. simplex varied across the ten host species, and the number of parasites varied substantially among individual hosts within host species. The mean intensity of P. terranova and A. simplex in our study was substantially higher than the mean intensity for these same species from multiple other locations in a recent meta-analysis. This study provides a baseline of nematode parasite abundance in long-lived fish in waters near Kodiak Island, AK, and fills an important gap in our quantitative understanding of patterns of occurrence and abundance of these common and widespread parasites of marine fish. Full article