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Preparation and Photophysical Study of Rhodamine–Perylenebisimide Electron Donor–Acceptor Dyad/Triads Containing Flexible Linkers -
Dual-Stimuli Responsive Cystamine-Modified Polydopamine Coatings as Payload Gatekeepers -
Enzymatic Nanomotors Integrated with Plant Extracts: Biochemical Mechanisms, Applications, and Clinical Perspectives -
Thallium Removal from Aqueous Solutions Using L Zeolite: Structural Modifications, Cation Distribution and Water Network Reorganisation -
Fe-Exchanged Natural Bentonites from Kazakhstan as Multifunctional Solids for Decontamination from Hazardous Chemicals: Structure–Reactivity Relationships Under Mild Conditions
Journal Description
Molecules
Molecules
is a leading international, peer-reviewed, open access journal of chemistry published semimonthly online by MDPI. The International Society of Nucleosides, Nucleotides & Nucleic Acids (IS3NA), Spanish Society of Medicinal Chemistry (SEQT) and International Society of Heterocyclic Chemistry (ISHC) are affiliated with Molecules and their members receive discounts on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, MEDLINE, PMC, Reaxys, CAplus / SciFinder, MarinLit, AGRIS, and other databases.
- Journal Rank: JCR - Q2 (Biochemistry and Molecular Biology) / CiteScore - Q1 (Organic Chemistry)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 15.6 days after submission; acceptance to publication is undertaken in 3.4 days (median values for papers published in this journal in the first half of 2026).
- Recognition of Reviewers: Reviewers whose reports are timely and of high quality receive an APC discount voucher for a future publication in an MDPI journal. Become a reviewer.
- Sections: published in 25 topical sections.
- Companion journal: Foundations.
- Journal Cluster of Chemical Reactions and Catalysis: Catalysts, Chemistry, Electrochem, Inorganics, Molecules, Organics, Oxygen, Photochem, Reactions, Sustainable Chemistry and Molbank.
Impact Factor:
5.1 (2025);
5-Year Impact Factor:
5.5 (2025)
Latest Articles
Study of the Gas-Phase Pyrolysis of N-Aryl-3-Oxobutanamides and the 2-Aryl Hydrazone Derivatives: A Novel Computational Approach Including DFT with Multivariant Analysis
Molecules 2026, 31(18), 3201; https://doi.org/10.3390/molecules31183201 - 10 Sep 2026
Abstract
In this work, we carried out a computational study of the gas-phase thermal decomposition of N-aryl-3-oxobutanamides (β-ketoamides) and the 2-arylhydrazone derivatives. We performed calculations using density functional theory (DFT) at the B97D-GD3BJ/deft2tzvp level, with multivariant analysis including descriptors of global reactivity,
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In this work, we carried out a computational study of the gas-phase thermal decomposition of N-aryl-3-oxobutanamides (β-ketoamides) and the 2-arylhydrazone derivatives. We performed calculations using density functional theory (DFT) at the B97D-GD3BJ/deft2tzvp level, with multivariant analysis including descriptors of global reactivity, e.g., ionization energy (I), electron affinity (A), molecular hardness (η) and electrophilicity (ω). The objective was to elucidate the reaction mechanism. To this end, we modeled the structures of reactants, transition state structures (TSs) and products and studied the effect of substituents on the N-aryl and the 2-aryl aromatic ring on the energy of activation. The synchronicity of the process and the nature of non-covalent interactions were studied to gain insight into the reactivity and selectivity of these molecules. We examined the reactivity of 2-arylhydrazone derivatives, which show reaction rates about three orders of magnitude slower than the parent β-ketoamide. We evaluated two competing mechanisms involving cyclic TSs of six and four members. This study included electronic descriptors, e.g., NBO analysis, IGM/IBSI, Wiberg bond indexes, and intrinsic reaction coordinate calculations (IRCs). We introduce a new descriptor, Dynamic Synchronicity, SyD, for mechanistic and kinetic characterization. To the best of our knowledge, this work is the first comprehensive theoretical study of the system ketoamide/aryl hydrazone. Multivariate statistical methods, i.e., principal component analysis (PCA) and hierarchical cluster analysis (HCA), are useful tools for the selection of the atoms involved in the TSs.
Full article
(This article belongs to the Special Issue Computational Approaches to Reaction Mechanisms)
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Open AccessArticle
The Effects of Sodium Antimonate on the Flame Retardancy and Mechanical Properties of Thermoplastic Polyurethane Composites
by
Xinchao Wang, Shaobin Cai, Chenhao Xu, Tie Geng, Xiaoli Bai, Jiayu Liao, Tongfei Zhang, Baichuan He, Pengyu He and Mengling Li
Molecules 2026, 31(18), 3200; https://doi.org/10.3390/molecules31183200 - 10 Sep 2026
Abstract
Thermoplastic polyurethane (TPU) is highly versatile yet inherently flammable, restricting its use in fire-safe applications. This study incorporates sodium antimonate (SA) into TPU via melt blending (0–10 wt%). Through a comprehensive suite of analytical techniques—including thermogravimetric analysis (TGA), Fourier transform infrared spectroscopy (FT-IR),
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Thermoplastic polyurethane (TPU) is highly versatile yet inherently flammable, restricting its use in fire-safe applications. This study incorporates sodium antimonate (SA) into TPU via melt blending (0–10 wt%). Through a comprehensive suite of analytical techniques—including thermogravimetric analysis (TGA), Fourier transform infrared spectroscopy (FT-IR), universal testing, and cone calorimetry—the effects of SA on the various properties of the material were investigated. Quantitative analysis reveals that 10 wt% SA delivers the best flame retardancy, reducing the peak heat release rate by ~50% (from 605 to 310 kW/m2) and total heat release by ~40% (from 32 to 19 MJ/m2), while increasing the char residue from 9.84% to 13.89%. However, to retain mechanical robustness, the SA content must be capped at ≤5 wt%. This ensures that the material retains 30% of its fracture elongation and a tensile strength of 1.7 MPa; higher loadings cause severe embrittlement due to particle agglomeration. Mechanistically, SA acts via a dual-phase mode—promoting a dense insulating char layer in the condensed phase and quenching reactive radicals in the gas phase. These findings establish a practical balance between fire safety and mechanical performance, offering a clear guideline for the rational design of flame-retardant TPU composites.
Full article
(This article belongs to the Special Issue Flame-Retardant Composites: Preparation, Characterization and Properties)
Open AccessArticle
The Formation of the Elemental Composition of Young Chardonnay Wine Through Fining with Organic Fining Agents
by
Aleksey Abakumov, Zaual Temerdashev, Evgeniy Gipich and Olga Scheludko
Molecules 2026, 31(18), 3199; https://doi.org/10.3390/molecules31183199 - 10 Sep 2026
Abstract
The paper shows the effect of organic fining agents on the formation of the elemental composition of young white wine of the Chardonnay variety. Substances of plant and animal origin and their mixtures were used as fining agents in the clarification of wines.
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The paper shows the effect of organic fining agents on the formation of the elemental composition of young white wine of the Chardonnay variety. Substances of plant and animal origin and their mixtures were used as fining agents in the clarification of wines. The results were compared with clarification with activated calcium bentonite. In the untreated young wines from different areas of grape cultivation the concentrations of macroelements were 707–837 mg/L; minor elements—5.05–9.67 mg/L; microelements—0.033–0.058 mg/L; and rare earth elements (REEs)—0.001–1.350 µg/L. It was noted that organic agents have a smaller effect on the mineral composition of wine. The content of macroelements in wine decreased, regardless of the fining agent used (p < 0.01). After treatment with organic agents, the concentrations of Ti, Sr, Na and Ca increased, while the concentrations of Cu, Zr, Mo, Cs, Ba, W, Fe, Rb and K decreased. No increase in the REE content was observed. A moderate correlation (Pearson r = 0.69, 95% CI: 0.44–0.85, n = 30, p < 0.0001) was established between the applied concentration of Na in wine and its concentration in the fining agent. Despite changes, the elemental “image” of wine allows us to correctly determine the geographical origin of the drink. The most reliable markers were Li and Mn.
Full article
(This article belongs to the Section Food Chemistry)
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Open AccessArticle
Impact of Thermal Processing and Storage on the Quality and Chirality of Linalool in Blueberry Juice
by
Zeyu Zhou, Chaoyi Tu and Fang Yuan
Molecules 2026, 31(18), 3198; https://doi.org/10.3390/molecules31183198 - 10 Sep 2026
Abstract
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Blueberry juice is valued for its distinctive flavor and health-promoting bioactive compounds, but thermal processing and subsequent storage can alter its quality and aroma. While previous studies have focused on total volatile profiles, the behavior of chiral aroma compounds—particularly linalool enantiomers—during processing and
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Blueberry juice is valued for its distinctive flavor and health-promoting bioactive compounds, but thermal processing and subsequent storage can alter its quality and aroma. While previous studies have focused on total volatile profiles, the behavior of chiral aroma compounds—particularly linalool enantiomers—during processing and storage remains poorly understood. This study aimed to investigate the effects of pasteurization (PT, 90 °C for 30 s) and ultra-high temperature processing (UHT, 135 °C for 6 s) on the physicochemical properties, bioactive compounds, antioxidant activity, volatile profiles, and sensory characteristics of blueberry juice during storage at 4, 25, and 35 °C for 4 weeks, with a special emphasis on the enantiomeric changes in linalool. A chiral column-based GC-MS method was established to quantify (R)- and (S)-linalool enantiomers, given their distinct odor thresholds and sensory contributions. The results showed that both thermal treatments ensured microbial safety, but UHT caused greater color deterioration, loss of phenolics and anthocyanins, and formation of off-flavor compounds. PT better preserved color, bioactive components, and natural fruity aroma. Storage temperature was the dominant factor driving quality decline, with 4 °C significantly retarding deterioration. Notably, the two thermal processes exhibited distinct mechanisms affecting chiral linalool stability: PT primarily induced isomerization of (R)-linalool to the (S)-form, leading to a gradual decrease in the R/S ratio, whereas UHT led to direct degradation of (R)-linalool, resulting in a more rapid shift in the R/S ratio under the same conditions. These findings highlight the importance of monitoring enantiomeric composition rather than total linalool content for flavor quality assessment. The combination of PT and refrigerated storage (4 °C) is recommended to maximize overall quality retention, as PT better preserves the natural chiral balance of linalool. This study demonstrates that appropriate thermal processing and low-temperature storage are effective strategies to maintain the quality and chiral flavor stability of blueberry juice, providing new insights into the role of enantiomer-specific changes in processed fruit products.
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Open AccessReview
A Half-Century of Supramolecular Thermodynamics: A Retrospective of Our Multidisciplinary Approach
by
Angela F. Danil de Namor and Nawal Al Hakawati
Molecules 2026, 31(18), 3197; https://doi.org/10.3390/molecules31183197 - 10 Sep 2026
Abstract
This review synthesizes 50 years of thermodynamic research in supramolecular chemistry, focusing on the interactions of diverse receptors with ionic and neutral species across various media. By evaluating a selection of foundational publications, this work highlights the critical role of host–guest selectivity. Crucially,
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This review synthesizes 50 years of thermodynamic research in supramolecular chemistry, focusing on the interactions of diverse receptors with ionic and neutral species across various media. By evaluating a selection of foundational publications, this work highlights the critical role of host–guest selectivity. Crucially, we emphasize that a deep understanding of fundamental thermodynamics, including binding constants, enthalpy, and entropy changes, is essential to rationally guide and optimize practical applications. In doing so, we used nuclear magnetic resonance (NMR), ultraviolet-visible (UV-Vis) spectroscopy, conductometry, potentiometry and titration microcalorimetry to characterize solution processes. We consider the scope and limitations of these techniques as well as the inherent limitations of the reaction media. We analyze how solution studies correlate with solid state profiles derived from X-ray diffraction (XRD) scanning electron microscopy (SEM), energy dispersive atomic X-ray spectroscopy (EDAX), thermogravimetric analysis and infrared (IR) spectroscopy. This foundational knowledge bridges theory and practice, driving applications in environmental remediation, such as targeted pollutant removal, and the development of highly sensitive, on-site sensing devices for real-time water monitoring. Finally, based on the historical trends and current gaps identified in the selected literature, we offer strategic suggestions for further research in this area.
Full article
Open AccessArticle
Determining Carrageenan Sulfate Groups Using Ion Association with Alcian Blue Dye
by
Alexander Shyichuk, Dorota Ziółkowska and Iryna Schyychuk
Molecules 2026, 31(18), 3196; https://doi.org/10.3390/molecules31183196 - 10 Sep 2026
Abstract
The purpose of this study is to develop a simple and reliable method to measure sulfate content and determine the purity of carrageenan raw materials. The method uses cationic Alcian Blue dye that binds strongly to anionic carrageenan macromolecules, resulting in an insoluble
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The purpose of this study is to develop a simple and reliable method to measure sulfate content and determine the purity of carrageenan raw materials. The method uses cationic Alcian Blue dye that binds strongly to anionic carrageenan macromolecules, resulting in an insoluble ion associate. At a specific carrageenan-to-dye ratio, the hydrophobic ion-associated particles form macroscopic flocs and precipitate quickly. The resulting deep sedimentation leaves almost colorless supernatants, indicating the stoichiometric charge ratio. The critical polymer-to-dye ratio has been found to be independent of the dye concentration. The Alcian Blue reagent has been standardized against a synthetic polymer, poly(sodium styrene sulfonate). The method of ion-associate precipitation was used to determine the content of sulfate groups in commercial carrageenans of different types: kappa, iota, and lambda. The results obtained agree well with the IR spectra of the tested carrageenans.
Full article
(This article belongs to the Special Issue Spectrophotometric Applications in Chemistry)
Open AccessArticle
Biocontrol of Fungal Pathogens of Winter Oilseed Rape (Brassica napus L.) Using Plant Extracts (Allium sativum, Helianthus tuberosus) and Bacterial Fermentation Supernatants (Paenibacillus, Enterobacter)
by
Jakub Danielewicz, Ewa Jajor, Joanna Horoszkiewicz, Marek Korbas, Ilona Świerczyńska, Łukasz Siekaniec, Marcin Podleśny, Marzena Mikos-Szymańska, Marta Klimczyk, Tomasz Szymczak, Jagoda Kucharska, Monika Kobiałka and Jan Bocianowski
Molecules 2026, 31(18), 3195; https://doi.org/10.3390/molecules31183195 - 10 Sep 2026
Abstract
Winter oilseed rape (Brassica napus L.) production is constrained by a complex of fungal pathogens, including Alternaria alternata, A. brassicicola, Botrytis cinerea, Phoma lingam and Sclerotinia sclerotiorum, which are conventionally managed with synthetic fungicides such as prothioconazole. This
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Winter oilseed rape (Brassica napus L.) production is constrained by a complex of fungal pathogens, including Alternaria alternata, A. brassicicola, Botrytis cinerea, Phoma lingam and Sclerotinia sclerotiorum, which are conventionally managed with synthetic fungicides such as prothioconazole. This study evaluated the biocontrol and biostimulant potential of two plant extracts (garlic, Allium sativum; Jerusalem artichoke, Helianthus tuberosus) and two bacterial fermentation supernatants (Enterobacter sp. and Paenibacillus sp.) against these pathogens under in vitro, greenhouse and field conditions (2022–2024, two locations: Winna Góra and Rzeszów, Poland). In vitro, the Paenibacillus sp. supernatant showed the broadest and strongest activity, with inhibition of mycelial growth comparable to prothioconazole for several pathogens, particularly A. brassicicola and B. cinerea. Garlic extract was most effective against S. sclerotiorum and B. cinerea, with efficacy increasing with concentration and reaching complete inhibition at 10%; because each concentration was analysed in a separate one-way model , this concentration trend is reported descriptively and was not formally tested as a product × concentration interaction. Jerusalem artichoke extract was consistently the most effective agent against P. lingam (88–92% inhibition, largely independent of concentration), while Enterobacter sp. showed a comparatively narrow spectrum, with no measurable activity against B. cinerea and only negligible activity against S. sclerotiorum (≤ 6% inhibition at all tested concentrations). In the greenhouse, all four bioproducts significantly stimulated seedling growth, with fresh shoot weight increases exceeding 100% relative to the untreated control; fresh root weight showed a similar but non-significant trend. Under field conditions, garlic extract and Paenibacillus sp. gave the most consistent statistically significant and, in several site-years, fungicide-comparable control of Phoma stem canker (Phoma lingam) and Alternaria black spot (Alternaria spp.), occasionally matching the fungicide Protikon 250 EC; on the other hand, Enterobacter sp. was more variable and Jerusalem artichoke extract intermediate. Seed yield was increased over the untreated control at Rzeszów in both seasons, with the exception of Enterobacter sp. in 2023/2024, but not at Winna Góra, and thousand-seed weight was unaffected by treatment.
Full article
(This article belongs to the Special Issue Natural Products as Plant Protection Agents)
Open AccessArticle
Structural Analysis of an Inulin-Type Fructan from Ophiopogon japonicus and Its Immunomodulatory Properties
by
Henan Sun, Hao Yu, Huiqiang Yu, Gaowa Saren, Ke Feng and Wenzhong Hu
Molecules 2026, 31(18), 3194; https://doi.org/10.3390/molecules31183194 - 10 Sep 2026
Abstract
A water-soluble, low-molecular-weight polysaccharide fraction, designated OJP-2, was extracted from the roots of Ophiopogon japonicus; its structural characteristics and immunomodulatory activity in macrophages were subsequently investigated. OJP-2 exhibited a narrow apparent molecular weight distribution with an average molecular weight (Mw) of 3568
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A water-soluble, low-molecular-weight polysaccharide fraction, designated OJP-2, was extracted from the roots of Ophiopogon japonicus; its structural characteristics and immunomodulatory activity in macrophages were subsequently investigated. OJP-2 exhibited a narrow apparent molecular weight distribution with an average molecular weight (Mw) of 3568 Da and was primarily composed of fructose (0.784) and glucose (0.208). Structural analysis—integrating UV spectroscopy, Fourier-transform infrared (FT-IR) spectroscopy, and 1D/2D nuclear magnetic resonance (NMR) spectroscopy—revealed that OJP-2 is an inulin-type fructan. Its structure is characterized predominantly by β-(2→1)-linked Fruf chains and terminal α-D-Glcp residues, with potential signals indicating C-6-substituted Fruf units. In vitro immunological studies demonstrated that OJP-2 promoted nitric oxide (NO) production and enhanced the secretion of IL-6, IL-1β, and TNF-α in RAW264.7 macrophages. Under LPS/IFN-γ stimulation, OJP-2 induced non-monotonic changes in the CD86/CD206 macrophage phenotype, with the most pronounced effects observed at a concentration of 50 μg/mL. Furthermore, Western blot analysis showed that, compared to the Model group, treatment with OJP-2 resulted in a downward trend in the relative levels of p-p65/p65 and p-IκBα/IκBα across the tested concentration range. Collectively, these findings indicate that OJP-2 modulates macrophage activation phenotypes and influences NF-κB-related signaling pathways. Thus, OJP-2 is a candidate fructan for further investigation of immunomodulatory activity.
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(This article belongs to the Special Issue Advanced Approaches for Extraction and Characterization of Bioactive Compounds from Natural Products)
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Open AccessArticle
Synthesis and Phase Evolution of Ultra-High Temperature MC-Type Carbides (M = Hf, Ta, Nb, Zr, Ti) via a Molecular Precursor Approach
by
Junyi Zheng, Haiyun Peng, Xiantao Yang, Yuenong Liu and Zhaoju Yu
Molecules 2026, 31(18), 3193; https://doi.org/10.3390/molecules31183193 - 10 Sep 2026
Abstract
In the present work, a series of single-source precursors were prepared via a one-pot synthesis strategy using transition metal chlorides, acetylacetone, and hydroquinone as raw materials. The molecular structure, cross-linking behavior, and polymer-to-ceramic transformation of the obtained precursors were systematically investigated by Fourier-transform
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In the present work, a series of single-source precursors were prepared via a one-pot synthesis strategy using transition metal chlorides, acetylacetone, and hydroquinone as raw materials. The molecular structure, cross-linking behavior, and polymer-to-ceramic transformation of the obtained precursors were systematically investigated by Fourier-transform infrared spectroscopy and thermogravimetric analysis. The phase composition, phase-transformation temperature, and grain size of the resulting ceramics were characterized by X-ray diffraction combined with Rietveld refinement. The resulting precursors exhibit good solubility in common organic solvents (e.g., ethanol, propanol, and acetone), rendering them suitable for fabricating ultra-high temperature ceramic matrix composites through polymer infiltration and the pyrolysis method. At 1400 °C, the ceramic yields of the TaC, HfC, ZrC, NbC, and TiC precursors were 62.45%, 57.53%, 48.55%, 45.53%, and 30.32%, respectively. After heat treatment at their respective phase-transformation temperatures, the resulting ceramics exhibited grain sizes of carbides in the range of approximately 80–100 nm. The mechanism governing the different phase-transformation temperatures (T) of the derived ceramics, which follow the order TNbC < TTaC < TTiC < THfC < TZrC, was elucidated through combined thermodynamic and kinetic analyses. This synthesis strategy was extended to the family of ultra-high temperature refractory metal carbides with melting points exceeding 3000 °C, demonstrating promising application potential for ultra-high temperature ceramic matrix composites.
Full article
(This article belongs to the Special Issue Recent Advances in Functionalized Nanomaterials: Design, Synthesis, Characterization, and Application—2nd Edition)
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Open AccessArticle
Natural Deep Eutectic Solvent-Based Extraction of Flavonoids from Citrus Aurantium L. By-Products: Process Optimization and Physicochemical Characterization of Optimal System
by
Joaquín Fernández-Cabal, Kevin Alejandro Avilés-Betanzos, Manuel Octavio Ramírez-Sucre, Juan Valerio Cauich-Rodríguez and Ingrid Mayanin Rodríguez-Buenfil
Molecules 2026, 31(18), 3192; https://doi.org/10.3390/molecules31183192 - 10 Sep 2026
Abstract
Citrus aurantium L. by-products are a valuable source of bioactive compounds with potential industrial applications. This study evaluated the use of natural deep eutectic solvents (NADESs), formulated with choline chloride as the hydrogen bond acceptor (HBA) and fructose as the hydrogen bond donor
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Citrus aurantium L. by-products are a valuable source of bioactive compounds with potential industrial applications. This study evaluated the use of natural deep eutectic solvents (NADESs), formulated with choline chloride as the hydrogen bond acceptor (HBA) and fructose as the hydrogen bond donor (HBD), combined with ultrasound-assisted extraction to optimize the recovery of flavonoids from Citrus aurantium L. industrial by-products. A central composite design (CCD) was employed to optimize total flavonoid content (TFC). The molar ratio (MR; 1 and 2 mol of HBD per mol of HBA) and the percentage of added water (AW; 40 and 60%) were optimized. In addition to TFC, total phenolic content (TPC), total ascorbic acid (TAA), antioxidant capacity (Ax) and phenolic profiles were also evaluated. The optimal extraction conditions, as obtained by Response Surface Methodology (RSM) for TFC, corresponded to an HBD molar ratio of 1.33 per 1 mol of HBA and 47.48% added water, resulting in an optimal value of 1576.63 ± 4.9 mg quercetin equivalents (QE)/100 g dry mass (DM). Maximum values of 4276.94 ± 25.4 mg gallic acid equivalents (GAE)/100 g DM for TPC, 2077.66 ± 21.3 mg/100 g DM for TAA and 88.09 ± 0.1% inhibition for Ax were also obtained. The optimal NADES was characterized by density, viscosity, pH, Fourier-transform infrared (FTIR) and Raman spectroscopy. Additionally, phenolic profiling revealed high concentrations of hesperidin (2747.1 mg/100 g DM), naringenin (1251.93 mg/100 g DM), and quercetin + luteolin (660.65 mg/100 g DM).
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(This article belongs to the Special Issue Bioactive Compounds from Fruits and Vegetables)
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Open AccessArticle
Efficient CO2 Activation Mediated by Triplet Pnictinidenes
by
Zheng-Feng Zhang and Ming-Der Su
Molecules 2026, 31(18), 3191; https://doi.org/10.3390/molecules31183191 - 10 Sep 2026
Abstract
The present investigation delineates the mechanistic landscape governing the [1 + 2] cycloaddition of CO2 with triplet monomeric pnictinidenes ([G15–Rea]3; G15 = Group 15 element) and identifies the principal energetic factors controlling their periodic reactivity. The computed potential-energy profiles
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The present investigation delineates the mechanistic landscape governing the [1 + 2] cycloaddition of CO2 with triplet monomeric pnictinidenes ([G15–Rea]3; G15 = Group 15 element) and identifies the principal energetic factors controlling their periodic reactivity. The computed potential-energy profiles support a stepwise mechanism in which cycloaddition is initiated on the triplet potential-energy surface through [G15–TS]3, followed by a singlet–triplet surface-crossing event at [G15–T/S] and subsequent relaxation to the singlet heterocyclic products [G15–Prod]1. ASM analysis reveals that the activation barriers are governed primarily by the deformation penalty associated with CO2, whereas deformation of the pnictinidene and interfragment interaction contribute comparatively little to the overall barrier. The systematic increase in this deformation penalty with increasing G15 atomic radius provides a direct energetic basis for the progressive attenuation of reactivity from the lighter to the heavier pnictinidenes. Taken together, these findings establish a deformation-controlled origin for the periodic reactivity trend and provide a qualitative theoretical framework for assessing the feasibility and mechanistic implications of the proposed experimental observations.
Full article
(This article belongs to the Special Issue Computational Chemistry of Non-Covalent and Coordination Interactions)
Open AccessReview
Aloe ferox as a Candidate Botanical Insecticide for Stored-Grain Protection: Evidence, Knowledge Gaps, and Prospects for Sitophilus zeamais Management
by
Florence Bukky Aina, Lisa Buwa-Komoreng, Lelethu Unathi-Nkosi Peter Heshula, Nyasha Esnath Chiuta, Tolulope Olubunmi Adeniji, Siphamandla Lamula, Shadreck Muchaku, Mhlangabezi Slayi and Charles Shelton Mutengwa
Molecules 2026, 31(18), 3190; https://doi.org/10.3390/molecules31183190 - 10 Sep 2026
Abstract
Botanical insecticides are increasingly being investigated as alternatives to synthetic pesticides for stored-grain protection. This review critically evaluates Aloe ferox Mill. as a candidate botanical insecticide with potential relevance to Sitophilus zeamais Motsch, the major stored-maize pest. The available evidence related to the
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Botanical insecticides are increasingly being investigated as alternatives to synthetic pesticides for stored-grain protection. This review critically evaluates Aloe ferox Mill. as a candidate botanical insecticide with potential relevance to Sitophilus zeamais Motsch, the major stored-maize pest. The available evidence related to the phytochemistry, reported pesticidal activities, proposed mechanisms of action, safety, and research needs was synthesised. A. ferox possesses a variety of secondary metabolites like anthraquinones, flavonoids, phenolics, chromones, tannins, alkaloids, and saponins, some of which have been reported to possess insecticidal, repellent, antifeedant, or growth-regulatory activity in other biological systems. But there is currently no direct experimental proof of the effectiveness of A. ferox against S. zeamais. A large proportion of the evidence relevant to pesticides is from other Aloe species, other insect and arthropod pests, or from one component or phytochemical studied in a different biological system. The findings, therefore, offer a justification for further investigations, but do not provide evidence of efficacy. Future research should focus on bioassays that directly test dose–responses, phytochemical standardisation, mechanism validation, formulation development, grain quality and residue evaluation, safety evaluation, and validation using realistic storage conditions.
Full article
(This article belongs to the Special Issue Production and Applications of Nature-Based Bioactive Compounds in Food, Cosmetic, Agricultural, and Pharmaceutical Sectors)
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Open AccessArticle
A Comprehensive Study of a New Norfloxacin-Niflumate Hydrate: Structural and Physicochemical Properties, Antibiotic Potency, Anti-Inflammatory Effect, and Drug Safety
by
Ilma Nugrahani, Yutong Wu, Sofia Fatmawati, Hidehiro Uekusa, Risang Wisesa, Masaki Uchida and Marlia Singgih Wibowo
Molecules 2026, 31(18), 3189; https://doi.org/10.3390/molecules31183189 - 10 Sep 2026
Abstract
Multicomponent antibiotic–anti-inflammatory systems have recently attracted considerable attention, as this combination is becoming a standard therapy for infectious diseases. This study aimed to develop a multicomponent system comprising norfloxacin (NOR), an old fluoroquinolone antibiotic, and niflumic acid (NIF), another old, poorly soluble anti-inflammatory
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Multicomponent antibiotic–anti-inflammatory systems have recently attracted considerable attention, as this combination is becoming a standard therapy for infectious diseases. This study aimed to develop a multicomponent system comprising norfloxacin (NOR), an old fluoroquinolone antibiotic, and niflumic acid (NIF), another old, poorly soluble anti-inflammatory drug, to improve the physicochemical properties, antibiotic potency, and anti-inflammation effect, as well as their safety. First, a phase diagram was constructed to ensure solid-state reaction and to predict its stoichiometry; subsequently, the multicomponent system was prepared by solvent-drop grinding. The product was analyzed by a series of thermal analyses and powder X-ray diffraction (PXRD). Next, Fourier-transform infrared spectroscopy and nuclear magnetic resonance elucidated the molecular interactions, and the final 3D structure was determined by single-crystal X-ray diffraction, followed by Hirshfeld surface analysis. Afterward, the solubility and chemical stability were assessed using high-performance liquid chromatography, and the physical stability of the multicomponent system was evaluated by PXRD. Antimicrobial potency against Gram-negative and Gram-positive bacteria, as well as anti-inflammatory activity in vivo, were also evaluated. The results demonstrated that a newly formed antibiotic–anti-inflammatory multicomponent system, named norfloxacin–niflumate (NORNIF), in a salt dihydrate form, significantly improved the stability and antibiotic potency of NOR, including against the resistant microbe, as well as the solubility and in vivo anti-inflammatory effect of NIF simultaneously. In addition, preliminary in silico studies using Swiss-ADME and ProTox-3 predicted that the salt was well absorbed in the gastrointestinal tract and could be classified as toxicity class 4 (non-toxic).
Full article
(This article belongs to the Section Molecular Structure)
Open AccessReview
Graphitic Carbon Nitride (g-C3N4)-Catalysed Green Synthesis of Heterocycles: Progress, Mechanistic Insights, and Future Perspectives
by
Jayanthi Barasarathi, Kasi Venkatesan, Saleh Alofi, Malgorzata Jeleń, Parasuraman Karthikeyan, Potchanun Sripothong and Beata Morak Młodawska
Molecules 2026, 31(18), 3188; https://doi.org/10.3390/molecules31183188 - 10 Sep 2026
Abstract
Graphitic carbon nitride (g-C3N4) has proved to be an excellent and versatile catalyst, devoid of any metal, for the sustainable production of heterocycles. Owing to its nitrogen-rich conjugated framework, which provides Lewis-basic and hydrogen-bonding sites and enables tuneable electronic
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Graphitic carbon nitride (g-C3N4) has proved to be an excellent and versatile catalyst, devoid of any metal, for the sustainable production of heterocycles. Owing to its nitrogen-rich conjugated framework, which provides Lewis-basic and hydrogen-bonding sites and enables tuneable electronic properties, together with its excellent thermal and chemical stability and recyclability, graphitic carbon nitride (g-C3N4) has emerged as a versatile metal-free heterogeneous catalyst for the synthesis of heterocycles. In this review, a critical analysis of recent trends in g-C3N4-catalysed multicomponent reactions (MCRs) and their related approaches towards the synthesis of pharmaceutically important heterocycles is provided. This review highlights current developments in g-C3N4-catalysed multicomponent reactions (MCRs) for the synthesis of biologically and pharmaceutically relevant heterocyclic frameworks, including pyrimidines, pyridines, pyrans, chromenes, tetrazoles, quinolines, imidazoles, triazoles, and spirocyclic heterocycles. Mechanistic aspects, including Lewis acid–base mechanism, photocatalysis and formation of radicals, have been highlighted to establish the correlation between catalyst properties and the reaction outcomes. The sustainability of the methodology is assessed through reaction mass efficiency, atom economy, process mass intensity, E-factor, energy efficiency and catalyst reusability. Critically analysed advancements have been made regarding the development of hybrid catalysts based on g-C3N4. Challenges faced during catalyst deactivation, utilization of visible light, scalability and incompleteness in green metric reporting are addressed.
Full article
(This article belongs to the Special Issue Heterocyclic Molecules in Drug Discovery)
Open AccessArticle
Universal Behavior in Enantioselective Adsorption of Amino Acids onto Chiral Terbium Phosphate Nanocrystals
by
Abdullah Idrees and Gil Markovich
Molecules 2026, 31(18), 3187; https://doi.org/10.3390/molecules31183187 - 10 Sep 2026
Abstract
The homochirality of biomolecules motivates the search for chiral surfaces capable of enantioselective recognition, yet systematic links between amino acid functional-group geometry and adsorption on chiral inorganic nanocrystals (NCs) remain limited. Here we investigate the enantioselective adsorption of asparagine, serine, and histidine onto
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The homochirality of biomolecules motivates the search for chiral surfaces capable of enantioselective recognition, yet systematic links between amino acid functional-group geometry and adsorption on chiral inorganic nanocrystals (NCs) remain limited. Here we investigate the enantioselective adsorption of asparagine, serine, and histidine onto intrinsically chiral Λ- and Δ-TbPO4·H2O NCs, which crystallize in a monoclinic (pseudo-hexagonal) structure. Individual-enantiomer adsorption isotherms and enantiomeric excess (ee) from racemic mixtures were determined using circular dichroism spectroscopy combined with potentiometric titration. Adsorption of single enantiomers followed the Langmuir model at low coverage, with L-enantiomers preferring Λ-NCs and D-enantiomers preferring Δ-NCs; matched chiral pairs showed roughly twofold higher equilibrium constants than mismatched pairs. At relatively high surface coverage, the adsorption behavior deviated from the Langmuir model and fitted the Frumkin model, which contains lateral attraction between adsorbed molecules. Enantioselectivity was highest at low racemate concentrations and declined with increasing total racemate concentrations, mirroring trends previously found for tartaric acid and aspartic acid on the same NCs. Tb3+–Tb3+ spacings on the dominant facets closely matched intramolecular functional-group distances in the amino acids, supporting a three-point chiral recognition mechanism.
Full article
(This article belongs to the Special Issue Chirality: The Molecular Key to Structure, Function and Future Materials)
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Open AccessReview
Mollusk-Derived Peptides at the Food-Pharma Interface: Bioactivities, Preclinical Evidence, and Development Prospects
by
Muhammad Imran, Yunyan Li, Muhammad Asif, Muhammad Azam, Kainat Aleem, Zhenyan Jiang, Muhammad Adil and Yanglei Yi
Molecules 2026, 31(18), 3186; https://doi.org/10.3390/molecules31183186 - 10 Sep 2026
Abstract
Mollusk-derived peptides are an expanding class of marine bioactive molecules that link food-protein utilization with pharmaceutical peptide discovery. They are derived from taxonomically and biologically diverse sources such as edible gastropods, bivalves, cephalopods and highly modified conopeptides from cone snails. However, there is
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Mollusk-derived peptides are an expanding class of marine bioactive molecules that link food-protein utilization with pharmaceutical peptide discovery. They are derived from taxonomically and biologically diverse sources such as edible gastropods, bivalves, cephalopods and highly modified conopeptides from cone snails. However, there is a lack of integrated understanding of sources, structures and functions of these peptides and their potential applications in food science, pharmacology, and venom research. In this review, the current knowledge related to mollusk-derived peptides from a food–pharma perspective is summarized, including taxonomic sources, tissue substrates, enzymatic hydrolysis, purification, sequence identification, reported bioactivities and structure–function relationships. The peptides derived from food are primarily short linear peptides from muscle, mantle, viscera, collagen, gelatin and processing by-products. These peptides have mainly been investigated for antioxidant, Angiotensin-I-converting enzyme inhibitory, anti-inflammatory, mineral-binding, gut-health, and metabolic activities. However, the biological functions of endogenous peptides and peptides from cone snails are often associated with cysteine-rich scaffolds and disulfide connectivity and post-translational modifications that confer antimicrobial activity, neuromodulation, and receptor selectivity. For these systems, the activity depends not on any single parameter but on the peptide length, amino acid sequence, charge distribution, hydrophobicity, amphipathicity, secondary structure and chemical modifications. Further progress requires improved sequence-level validation, mechanism-driven bioassays, in vivo and clinical evidence, safety assessment, and feasible purification and delivery strategies for mollusk peptides into functional foods, nutraceuticals and peptide-based therapeutics.
Full article
(This article belongs to the Special Issue Bioproducts for Health, 4th Edition)
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Open AccessArticle
Interfacial Molecular Mechanisms Governing the NMR Relaxation of Clay-Bound Water in Organic-Rich Shales with Implications for NMR Logging
by
Xuanhua Zhang, Xinmin Ge, Zhenying Liu and Minjie Li
Molecules 2026, 31(18), 3185; https://doi.org/10.3390/molecules31183185 - 10 Sep 2026
Abstract
Organic-rich shale contains chemically heterogeneous mineral–organic interfaces that produce strong and spatially variable proton surface relaxation, complicating the identification of clay-bound water and the conversion of NMR relaxation time into pore size. Conventional interpretations commonly treat surface relaxivity as a constant, while the
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Organic-rich shale contains chemically heterogeneous mineral–organic interfaces that produce strong and spatially variable proton surface relaxation, complicating the identification of clay-bound water and the conversion of NMR relaxation time into pore size. Conventional interpretations commonly treat surface relaxivity as a constant, while the respective contributions of water-retaining surface chemistry, molecular restriction, and paramagnetic centers remain insufficiently separated. In this study, Wufeng–Longmaxi shale samples from the Yongchuan Block were investigated using mineralogical and pore structural characterization, Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, cation exchange capacity, zeta potential, electron paramagnetic resonance, controlled hydration, one- and two-dimensional low-field time domain NMR, and molecular dynamics simulations. Under the present fluid and acquisition conditions, strongly surface-associated water was operationally identified mainly at T2 < 1.6 ms and T1 < 85 ms, while the effective transverse surface relaxivity ranged from 3.6 to 9.1 μm/s. Water retention was more closely associated with cation exchange capacity and surface –OH/O–C environments, whereas relaxation efficiency was controlled more directly by EPR-detectable paramagnetic centers and restricted molecular motion of interfacial water. Simulations of Na-smectite, chlorite, illite, and kerogen-covered illite revealed systematic differences in water density layering, adsorption strength, hydrogen bond persistence, molecular residence, translational diffusion, rotational reorientation, and proton–proton dipolar correlation. A chemistry-informed model combining the EPR-derived paramagnetic center density with a surface area-weighted molecular restriction index explained 86% of the measured relaxivity variation, with an adjusted R2 of 0.83 and leave-one-out cross-validation RMSE and MAE values of 0.71 and 0.57 μm/s, respectively. At the core scale, the variable relaxivity interpretation reduced the mean absolute percentage error of characteristic pore diameter from 21.9% to 4.5% and the RMSE of the clay-bound water fraction from 3.4 to 0.4 percentage points relative to the fixed relaxivity method. Transfer to NMR logging further reduced lithology-dependent biases in pore size conversion and clay-bound water partitioning. These results define shale surface relaxivity as an emergent interfacial property arising from coupled magnetic and molecular controls and provide a mechanistic basis for NMR analysis of chemically heterogeneous shale materials.
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(This article belongs to the Special Issue NMR and MRI in Materials Analysis: Opportunities and Challenges)
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Open AccessReview
Research Progress on Acidizing Techniques for Complex-Type Reservoirs
by
Yujie Bai, Yifei Sun, Chao Xu, Mingxing Bai, Jiashu Wu, Jingfang Cui, Guangsheng Cao and Gen Li
Molecules 2026, 31(18), 3184; https://doi.org/10.3390/molecules31183184 - 10 Sep 2026
Abstract
With the continuous decline in easily recoverable reserves of conventional oil and gas, the focus of oil and gas exploration and development has gradually shifted toward complex reservoirs, such as low-permeability, tight, high-temperature and high-pressure (HTHP), and strongly heterogeneous reservoirs. Such reservoirs are
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With the continuous decline in easily recoverable reserves of conventional oil and gas, the focus of oil and gas exploration and development has gradually shifted toward complex reservoirs, such as low-permeability, tight, high-temperature and high-pressure (HTHP), and strongly heterogeneous reservoirs. Such reservoirs are characterized by complex pore–throat structures, poor seepage capacity, extreme temperature and pressure conditions, and strong heterogeneity. Traditional acidizing technologies face multiple challenges, including short effective penetration distances, system instability at high temperatures, uneven stimulation, and a tendency to induce secondary formation damage, making it difficult to meet the requirements for highly efficient reservoir stimulation. This paper systematically analyzes the petrophysical properties and acidizing challenges of four typical types of complex reservoirs. It reviews the reaction mechanisms, research and development progress, and reservoir adaptability principles of six acid systems, and elaborates on the application value of molecular simulation technology in acid–rock reaction analysis, formulation optimization, and injection regulation. The review indicates that, under extreme operating conditions, existing technologies still suffer from inadequate system stability, limited deep mass transfer, and environmental concerns. Future research should deepen the understanding of multi-scale acid–rock reaction mechanisms, develop composite acid systems tolerant to extreme conditions, and drive the development of acidizing technologies toward refinement and intelligentization.
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(This article belongs to the Section Natural Products Chemistry)
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Open AccessReview
Zeolites and Zeolite-Based Materials at the Biointerface: From Haemostasis and Biomolecule Separation to Theranostic Applications
by
Olimpia Tammaro
Molecules 2026, 31(18), 3183; https://doi.org/10.3390/molecules31183183 - 10 Sep 2026
Abstract
Zeolites are crystalline microporous aluminosilicates whose tunable porosity, ion-exchange capacity, surface charge, and chemical robustness make them versatile materials at the biointerface. This review surveys three converging domains of zeolite biomedicine. First, haemostasis and wound healing, where water adsorption and Ca2+ release
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Zeolites are crystalline microporous aluminosilicates whose tunable porosity, ion-exchange capacity, surface charge, and chemical robustness make them versatile materials at the biointerface. This review surveys three converging domains of zeolite biomedicine. First, haemostasis and wound healing, where water adsorption and Ca2+ release drive procoagulant activity, from the QuikClot generation to strategies that mitigate the exothermic response and to flexible zeolite–textile dressings. Second, the separation, immobilization, and sensing of biomolecules, where external surface area, hierarchical porosity, and surface chemistry—rather than intracrystalline sieving alone—govern the interaction with proteins and nucleic acids in complex matrices. Third, the emerging design of zeolite-based theranostic platforms integrating drug delivery, imaging, and stimuli-responsive therapy, enabled by the transition from bulk crystals to surface-engineered nanozeolites. Across all three domains, a single lesson recurs: the biological behaviour of zeolites is governed by the external surface rather than by molecular sieving, and the chemical integrity of the framework under working conditions is a design parameter that is reported only sporadically. We further show that the theranostic literature reaching in vivo validation is dominated by zeolite-like imidazolate frameworks, whereas the evidence for aluminosilicate zeolites remains largely in vitro—the gap that most urgently needs closing. The successes of ZIFs should therefore be read as structural inspiration for zeolite design rather than as direct evidence for aluminosilicate clinical translation.
Full article
(This article belongs to the Special Issue Zeolites and Mesoporous Materials: Properties and Applications, 3rd Edition)
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Open AccessArticle
A Fluorescence-Based Acetylcholinesterase Inhibition Assay for Bioactivity-Guided Identification of Neuroactive Protoberberine Alkaloids from Berberis julianae C.K. Schneid.
by
Maryna Koval, Magdalena Lasota, Aleksandra Barańska, Bartosz Skóra, Myroslav Shevera, Tetiana Dvirna, Katarzyna Gaweł-Bęben and Wirginia Kukula-Koch
Molecules 2026, 31(18), 3182; https://doi.org/10.3390/molecules31183182 - 10 Sep 2026
Abstract
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Background/Objectives: The identification of acetylcholinesterase (AChE) inhibitors from complex natural matrices remains challenging due to the limitations of conventional colorimetric assays. This study aimed to develop a fluorescence-based AChE inhibition assay (FAIA) suitable for screening plant extracts, while simultaneously characterizing the metabolite profile
[...] Read more.
Background/Objectives: The identification of acetylcholinesterase (AChE) inhibitors from complex natural matrices remains challenging due to the limitations of conventional colorimetric assays. This study aimed to develop a fluorescence-based AChE inhibition assay (FAIA) suitable for screening plant extracts, while simultaneously characterizing the metabolite profile of Berberis julianae fruits, identifying bioactive alkaloid-enriched fractions, and evaluating their cytotoxicity in neuronal cell models. Methods: Methanolic extracts of B. julianae fruits were profiled by HPLC-ESI-QTOF-MS/MS and fractionated using centrifugal partition chromatography (CPC). The developed FAIA, based on 4-methylumbelliferyl acetate as a fluorogenic substrate, was optimized and validated using berberine as a reference inhibitor. CPC fractions and selected protoberberine alkaloids were screened for AChE-inhibitory activity, while cytotoxicity was assessed in differentiated and undifferentiated SH-SY5Y cells using the resazurin assay. Results: Twenty-five metabolites, including eight isoquinoline alkaloids, were tentatively identified in the fruit extract. The optimized FAIA enabled reliable evaluation of AChE inhibition without the limitations associated with chromogenic assays. Among the CPC fractions, fraction 7 exhibited the strongest inhibitory activity. LC-MS analysis revealed that this fraction was enriched in protoberberine alkaloids, including berberine, palmatine, jatrorrhizine, magnocurarine, and demethyleneberberine. Cytotoxicity studies demonstrated concentration-dependent effects of both the isolated fractions and the individual alkaloids, with differentiated and undifferentiated SH-SY5Y cells exhibiting distinct sensitivity profiles. At 200 µg/mL, cell viability ranged from approximately 20–40% in undifferentiated SH-SY5Y cells and from approximately 25–45% in differentiated SH-SY5Y cells, depending on the CPC fraction. Among the tested protoberberine alkaloids, demethyleneberberine exhibited the lowest cytotoxic effect, maintaining the highest viability of differentiated SH-SY5Y cells, followed by jatrorrhizine and berberine. Conclusions: The proposed FAIA represents a sensitive and practical approach for screening AChE inhibitors in complex plant matrices. Combined with metabolomic profiling and CPC-based bioassay-guided fractionation, it enabled the identification of alkaloid-rich fractions of B. julianae with pronounced anti-AChE activity. These findings support the applicability of the developed workflow for natural-product-based drug discovery targeting neurodegenerative disorders.
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