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Methods and Protocols

Methods and Protocols is an international, peer-reviewed, open access journal aiming to establish and describe new experimental techniques in the fields of Life Sciences, Chemistry, and Biomedical Sciences, published bimonthly online by MDPI.

Indexed in PubMed | Quartile Ranking JCR - Q3 (Biochemical Research Methods)

All Articles (772)

Blood flow restriction (BFR) and body cooling (BC) have been investigated separately during exercise, but little is known about their concurrent use. This study examined acute metabolic responses, respiratory physiology, and rate of perceived exertion (RPE) during interval training (IT) performed with combined BFR and BC (VASPER ON) compared with IT without BFR and BC (VASPER OFF). It was hypothesized that VASPER ON would elicit greater physiological demands. A total of 7 female and 19 male participants (20.2 ± 2.4 years) completed a 21-min IT exercise. In VASPER ON, the participants wore cuffs that simultaneously applied BFR and BC. Total oxygen consumption (TVO2), total carbon dioxide production (TVCO2), total breaths (BRTH), and total ventilation (TVE) were measured during exercise (EX) and for 10 min post-exercise (Post-EX). RPE was recorded during EX. During EX, TVE and ventilatory equivalents for both oxygen and carbon were significantly higher in VASPER ON. Post-EX, all variables remained significantly elevated in VASPER ON except for the ventilatory equivalent for carbon dioxide. Sprint interval RPE was significantly lower in VASPER OFF. These findings suggest that concurrent BFR and BC increase post-exercise metabolic and ventilatory demands without attenuating each other’s effect.

5 November 2025

A participant exercising with VASPER ON (A) and VASPER OFF (B). In the VASPER ON condition, the cuffs were applied to the participant’s upper brachial and femoral regions. The cuff width for the arms and legs is 13 cm and 21 cm, respectively. The system’s tablet displayed the exercise protocol and prompted participants to either sprint or rest. It displayed the target power output that participants were required to sustain by modifying their cadence.

Biodegradable Microneedle for Enhanced Transdermal Drug Delivery: Trends and Techniques

  • Renuka Khatik,
  • Jatin Kumar Sahu and
  • Shuvadip Bhowmik
  • + 3 authors

The Transdermal Drug Delivery System (TDDS) offers several benefits, such as enhanced patient adherence, controlled release, reduced gastric irritation, and the bypassing of the first-pass metabolism. However, not all drugs can be delivered through this route in effective doses. Biodegradable microneedles (BMn) are designed to improve TDDS. This review outlines various types of BMn and their fabrication methods. BMn are produced in different forms, including hollow, solid, dissolve, and hydrogel-forming versions, which have garnered significant attention. These innovative BMn do not contain drugs themselves but instead absorb interstitial fluid to create continuous channels between the dermal microcirculation and a drug-containing patch. Several types of BMn have been tested and approved by regulatory bodies. The use of BMn technology is rapidly growing in point-of-care applications, attracting significant interest from both researchers and healthcare providers. BMn-based Point-of-care (POC) devices have high efficacy for finding various analytes of clinical interests and transdermal drug administration in a minimally invasive manner owing to BMn’ micro-size sharp tips and ease of use. Porous BMn technology may have a very rising future in the case of a vaccine delivery system.

4 November 2025

A schematic representation of BMn commonly utilized in biomedical diagnostics and therapeutic applications (created by the authors).
  • Systematic Review
  • Open Access

Functional Outcomes After Imaging- and Orthopedic Test-Guided Evaluation of Shoulder Disorders: Systematic Review and Meta-Analysis

  • Carlos Miquel García-de-Pereda-Notario,
  • Luis Palomeque-Del-Cerro and
  • Ricardo García-Mata
  • + 1 author

Background: Shoulder soft tissue disorders, such as rotator cuff tears and subacromial impingement, are among the most common causes of musculoskeletal disability. Both physical examination tests and imaging techniques are routinely used in clinical settings; however, their respective contributions to patient outcomes and their potential complementarity remain underexplored. Methods: A systematic review and meta-analysis were conducted following PRISMA 2020 guidelines. Controlled clinical studies comparing pre- and post-intervention outcomes in adults with suspected or confirmed shoulder soft tissue pathology were included. Two groups were analyzed: studies using musculoskeletal imaging (ultrasound or MRI) and studies applying orthopedic physical examination tests (e.g., Neer, Hawkins, and Jobe). Functional outcomes were converted into standardized mean differences (SMDs) and synthesized using a random-effects model. Heterogeneity was quantified using the I2 statistic. Results: In total, 11 studies met the inclusion criteria (n = 6 imaging, n = 5 orthopedic tests). Imaging-based studies showed a pooled SMD of 4.85 (95% CI: 2.77–6.93), indicating substantial clinical improvement. Orthopedic test-based studies yielded a pooled SMD of 2.34 (95% CI: 1.27–3.41). Heterogeneity was high across both groups (I2 > 90%). Conclusions: Imaging was associated with a larger overall clinical effect, while orthopedic tests provided functional insight valuable for screening and monitoring. These findings support the complementary use of both strategies to enhance diagnostic accuracy and treatment planning in shoulder care.

3 November 2025

PRISMA flow diagram of the article selection process.

Background: Developing clinically relevant experimental models of the human airway can significantly advance our understanding of the mechanisms underlying airway diseases and aid in translating potential therapies to clinical settings. The aim of this study is to establish an ex vivo human airway tissue culture model. Methods: Human donor airway tissues were obtained from clinical cases of lung transplantation. Our established method is based on the concept of scavenging metabolic activity and controlling bacterial growth and includes increased media volume, frequent media exchange, and antifungal additives to efficiently maintain the homeostatic culture environment. After a 3-day culture period, the airway was investigated, and its viability and function were compared with a standard cell culture method. Results: Control tissue exhibited significant acidosis after 3 days, suggesting high metabolic activity of airway tissue and bacterial contamination. The airway epithelial viability—after culturing in our established method for 3 days—was better than that of the controls. We only performed an acute but early investigation of the cultures as airway complications have been known to start early at the proximal bronchus after transplantation. H&E and alcian blue staining showed intact morphology of the epithelium of airway tissue and mucus layers after 3 days in our model, while controls showed remarkable damage to the epithelial layer. Newly synthesized glycoproteins were detected in the epithelial layer using metabolic labeling and the click chemistry technique, suggesting cellular protein synthesis of the airway tissue in our established ex vivo model. Conclusions: We successfully established a reproducible model of human ex vivo airway tissue culture (n = 3 independent biological samples) that may be useful for investigating airway complications and developing their therapies.

2 November 2025

Establishment of ex vivo culture airway model. (A) Study design: Schematic presentation of the design of our model, indicating the culturing of the airway using the conventional and optimized method. (B) Comparative analysis of TTC staining. Figure revealed differential staining intensity in four distinct groups: (i) Unstained, serves as a negative control (without staining); (ii) Pre-culture, represents tissues immediately after cold ischemia; (iii) Control, indicates tissue subjected to conventional culturing conditions; and (iv) Optimized, denotes tissues treated under optimized culturing conditions for 3 days. Remarkably, the optimized group demonstrates significantly enhanced positive TTC staining, indicative of epithelial viability, in comparison to the pre-culture condition. The control group does not exhibit positive staining, denoting the loss of epithelial viability. (C) Quantitation of TTC stained tissue. Quantitative data for TTC reveals high positive staining in optimized tissue (n = 3, independent biological samples) after 3-day culture as compared to both pre-culture condition and control (p < 0.003). ***: p < 0.003, ****: p < 0.001.

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Methods Protoc. - ISSN 2409-9279Creative Common CC BY license