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2,222 Results Found

  • Brief Report
  • Open Access
7 Citations
3,523 Views
13 Pages

DNA Enrichment Methods for Microbial Symbionts in Marine Bivalves

  • Qiqi Li,
  • Yu Chen,
  • Si Zhang,
  • Yuanjiao Lyu,
  • Yiyang Zou and
  • Jie Li

High-throughput sequencing is a powerful tool used for bivalve symbiosis research, but the largest barrier is the contamination of host DNA. In this work, we assessed the host DNA reduction efficiency, microbial community structure, and microbial div...

  • Article
  • Open Access
1,609 Views
13 Pages

Enrichment of Aquatic Xylan-Degrading Microbial Communities

  • Aline Lucie Odette Gaenssle,
  • Salvador Bertran-Llorens,
  • Peter Joseph Deuss and
  • Edita Jurak

The transition towards a sustainable society involves the utilization of lignocellulosic biomass as a renewable feedstock for materials, fuel, and base chemicals. Lignocellulose consists of cellulose, hemicellulose, and lignin, forming a complex, rec...

  • Article
  • Open Access
2 Citations
2,518 Views
17 Pages

11 March 2023

(1) Background: Microbial conversion of gaseous molecules, such as CO2, CO and H2, to valuable compounds, has come to the forefront since the beginning of the 21st century due to increasing environmental concerns and the necessity to develop alternat...

  • Article
  • Open Access
8 Citations
2,482 Views
13 Pages

26 July 2024

To expedite enrichment of anaerobic ammonia-oxidizing bacteria (AnAOB) as a way to reduce the start-up time, leading to a quicker transition into stable operation, the anaerobic ammonia oxidation (anammox) process was initiated by a biofilm reactor w...

  • Article
  • Open Access
1 Citations
998 Views
17 Pages

17 October 2025

Increased seawater temperatures and nutrient loading are stressors that affect coral reefs and their microbiomes. In this study, filamentous algae were collected and exposed to different temperatures and nutrient concentrations through a laboratory e...

  • Article
  • Open Access
2 Citations
2,170 Views
11 Pages

13 September 2024

Microbial electrochemical cells (MxCs) offer a sustainable approach for wastewater treatment and energy recovery by harnessing the electroactive properties of microorganisms. This study explores the enrichment of Geobacter species on anode biofilms i...

  • Article
  • Open Access
15 Citations
2,499 Views
16 Pages

22 December 2023

Microbial fuel cell (MFC) performance is affected by the metabolic activity of bacteria and the extracellular electron transfer (EET) process. The deficiency of nanostructures on macroporous anode obstructs the enrichment of exoelectrogens and the EE...

  • Article
  • Open Access
239 Views
18 Pages

Biohydrogen production can be derived from low-value lignocellulosic biomass; however, in many biohydrogen producing systems, xylose is utilized less efficiently than glucose, which limits overall substrate conversion. To address this issue, Fe/Mn-mo...

  • Review
  • Open Access
20 Citations
4,476 Views
16 Pages

Mineral-Enriched Postbiotics: A New Perspective for Microbial Therapy to Prevent and Treat Gut Dysbiosis

  • Laura-Dorina Dinu,
  • Ionela Avram,
  • Diana-Roxana Pelinescu and
  • Emanuel Vamanu

25 September 2022

Postbiotics are non-viable probiotic preparations that confer a health benefit on the host. In the last years, scientific literature has proved that postbiotics have health-promoting features and technological advantages compared to probiotics, augme...

  • Article
  • Open Access
2 Citations
3,451 Views
19 Pages

The majority of the microbial diversity in nature has not been recovered through cultivation. Enrichment is a classical technique widely used in the selective cultivation of specific taxa. Whether enrichment is suitable for cultivation studies that a...

  • Article
  • Open Access
228 Views
15 Pages

Enhancing Soil Biological Health in a Rice–Wheat Cropping Sequence Using Rock Phosphate-Enriched Compost and Microbial Inoculants

  • Kasturikasen Beura,
  • Amit Kumar Pradhan,
  • Sagar Nandulal Ingle,
  • Anshuman Kohli,
  • Goutam Kumar Ghosh,
  • Mahendra Singh,
  • Subrat Keshori Behera and
  • Dinesh Panday

18 December 2025

Limited phosphorus (P) availability and declining soil biological health are major constraints in intensive rice (Oryza sativa L.)—wheat (Triticum aestivum L.) systems. Rock phosphate–enriched compost (REC), combined with microbial inocul...

  • Review
  • Open Access
1 Citations
2,073 Views
19 Pages

Rare earth elements and yttrium (REY) are critical metals underpinning high-technology industries. Marine deposits have attracted growing interest due to their abundant REY reserves and high grades. This review synthesizes current knowledge on source...

  • Article
  • Open Access
432 Views
18 Pages

Microbial Divergence and Degradative Capacity During Straw Enrichment

  • Hui Zhang,
  • Chenqiang Lin,
  • Longjun Chen,
  • Yu Fang and
  • Xianbo Jia

18 November 2025

Whether consecutive annual incorporation of rice straw can enrich straw-decomposing microorganisms, and what common and distinct dominant straw-degrading microbial populations exist in soils under long-term rice straw incorporation across different r...

  • Article
  • Open Access
1 Citations
842 Views
18 Pages

28 May 2025

Selenium (Se) is an essential trace element for the human body, primarily obtained from dietary sources. The unique characteristics of Se-enriched saline–alkali soils provide valuable insights into how plants absorb and accumulate Se. The prese...

  • Article
  • Open Access
1 Citations
873 Views
18 Pages

7 September 2025

Increased Nitrogen (N) input exerts significant impact on the functional integrity of terrestrial ecosystems, with alpine grasslands being particularly susceptible. Soil microbes are intricately intertwined with nearly all facets of essential biogeoc...

  • Article
  • Open Access
4 Citations
1,924 Views
23 Pages

Nitrogen Enrichment Alters Plant Root, Soil Microbial Structure, Diversity, and Function in Mountain Forests of North China

  • Xiaoli Han,
  • Qian Luo,
  • Yuhan Chen,
  • Yajie Xuan,
  • Lei Wu,
  • Wenhui Qiu,
  • Xiaogang Wu,
  • Yinglong Chen and
  • Jinping Guo

5 March 2025

Nitrogen (N) enrichment significantly impacts temperate forest ecosystems, but we lack a comprehensive understanding of the responses of root morphological characteristics, soil microbial communities, and soil multifunctionality concurrently to varyi...

  • Article
  • Open Access
5 Citations
3,578 Views
16 Pages

Divergent Accumulation of Microbial Residues and Amino Sugars in Loess Soil after Six Years of Different Inorganic Nitrogen Enrichment Scenarios

  • Dominic Kwadwo Anning,
  • Zhilong Li,
  • Huizhen Qiu,
  • Delei Deng,
  • Chunhong Zhang,
  • Philip Ghanney and
  • Qirong Shen

22 June 2021

Amino sugars are key microbial biomarkers for determining the contribution of microbial residues in soil organic matter (SOM). However, it remains largely unclear as to what extent inorganic nitrogen (N) fertilization can lead to the significant degr...

  • Article
  • Open Access
1 Citations
2,113 Views
18 Pages

Microbial Community Shifts in Tea Plant Rhizosphere under Seawater Stress: Enrichment of Beneficial Taxa

  • Xiaohua Zhang,
  • Haozhen Li,
  • Bin Li,
  • Kangkang Song,
  • Yuxue Sha,
  • Ying Liu,
  • Shaolin Dong,
  • Di Wang and
  • Long Yang

Seawater intrusion has a significant impact on the irrigation quality of agricultural water, thereby posing a threat to plant growth and development. We hypothesized that the rhizosphere of tea plants harbors beneficial microorganisms, which may impr...

  • Article
  • Open Access
25 Citations
5,218 Views
16 Pages

Biodegradation of 1,4-dioxane, a water contaminant of emerging concern, has drawn substantial attention over the last two decades. A number of dioxane-degraders have been identified, though many of them are unable to metabolically utilize 1,4-dioxane...

  • Article
  • Open Access
5 Citations
3,724 Views
14 Pages

The Transformation of Hg2+ during Anaerobic S0 Reduction by an AMD Environmental Enrichment Culture

  • Yuhang Zhou,
  • Yue Liu,
  • Hongchang Liu,
  • Zhenyuan Nie,
  • Yirong Wang and
  • Lu Chen

Mercury (Hg) is a highly toxic and persistent heavy metal pollutant. The acid mine drainage (AMD) environment in sulfide-mining areas is a typical Hg pollution source. In this paper, the transformation of Hg2+ during anaerobic S0 reduction by an AMD...

  • Article
  • Open Access
8 Citations
3,761 Views
24 Pages

CaptureSeq: Hybridization-Based Enrichment of cpn60 Gene Fragments Reveals the Community Structures of Synthetic and Natural Microbial Ecosystems

  • Matthew G. Links,
  • Tim J. Dumonceaux,
  • E. Luke McCarthy,
  • Sean M. Hemmingsen,
  • Edward Topp and
  • Jennifer R. Town

Background. The molecular profiling of complex microbial communities has become the basis for examining the relationship between the microbiome composition, structure and metabolic functions of those communities. Microbial community structure can be...

  • Article
  • Open Access
7 Citations
5,388 Views
16 Pages

Mechanistic understanding of how activated sludge (AS) solids density influences wastewater treatment processing is limited. Because microbial groups often generate and store intracellular inclusions during certain metabolic processes, it is hypothes...

  • Article
  • Open Access
341 Views
22 Pages

Selection of Candidate Bacteria for Microbial Enrichment of Soil Amendments to Manage Contaminants of Emerging Concern in Agricultural Soils

  • Rossana Sidari,
  • Maria Teresa Rodinò,
  • Giulio Scarpino,
  • Stefano Mocali,
  • Sara Del Duca,
  • Elisabetta Loffredo and
  • Antonio Gelsomino

2 December 2025

Recycled bio-wastes such as compost and vermicompost, and bioenergy byproducts such as digestate and biochar are widely acknowledged for their role as soil conditioners capable of preserving soil fertility, maintaining soil health, and acting as a bi...

  • Review
  • Open Access
19 Citations
8,405 Views
12 Pages

11 November 2013

Investigations of microbial ecology and diversity have been greatly enhanced by the application of culture-independent techniques. One such approach, metagenomics, involves sample collections from soil, water, and other environments. Extracted nuclei...

  • Article
  • Open Access
1 Citations
2,036 Views
20 Pages

Isolation, Enrichment and Analysis of Aerobic, Anaerobic, Pathogen-Free and Non-Resistant Cellulose-Degrading Microbial Populations from Methanogenic Bioreactor

  • Lyudmila Dimitrova,
  • Yana Ilieva,
  • Dilnora Gouliamova,
  • Vesselin Kussovski,
  • Venelin Hubenov,
  • Yordan Georgiev,
  • Tsveta Bratanova,
  • Mila Kaleva,
  • Maya M. Zaharieva and
  • Hristo Najdenski

30 April 2025

Background: Nowadays, the microbial degradation of cellulose represents a new perspective for reducing cellulose waste from industry and households and at the same time obtaining energy sources. Methods: We isolated and enriched two aerobic (at 37 &d...

  • Article
  • Open Access
1 Citations
1,246 Views
16 Pages

Significant Enrichment of Potential Pathogenic Fungi in Soil Mediated by Flavonoids, Phenolic Acids, and Organic Acids

  • Shaoguan Zhao,
  • Yan Sun,
  • Lanxi Su,
  • Lin Yan,
  • Xingjun Lin,
  • Yuzhou Long,
  • Ang Zhang and
  • Qingyun Zhao

17 February 2025

It is well established that root exudates play a crucial role in shaping the assembly of plant rhizosphere microbial communities. Nonetheless, our understanding of how different types of exudates influence the abundance of potential pathogens in soil...

  • Article
  • Open Access
9 Citations
3,904 Views
18 Pages

Electrochemical Bacterial Enrichment from Natural Seawater and Its Implications in Biocorrosion of Stainless-Steel Electrodes

  • María José De La Fuente,
  • Leslie K. Daille,
  • Rodrigo De la Iglesia,
  • Magdalena Walczak,
  • Francisco Armijo,
  • Gonzalo E. Pizarro and
  • Ignacio T. Vargas

19 May 2020

Microbial electrochemical technologies have revealed the opportunity of electrochemical enrichment for specific bacterial groups that are able to catalyze reactions of interest. However, there are unsolved challenges towards their application under a...

  • Article
  • Open Access
15 Citations
10,988 Views
16 Pages

19 August 2013

Fish play a critical role in nutrient cycling and organic matter flow in aquatic environments. However, little is known about the microbial diversity within the gastrointestinal tracts that may be essential in these degradation activities. Panaque n...

  • Article
  • Open Access
1 Citations
916 Views
20 Pages

The karst region is highly ecologically fragile due to its unique geology and poor water and nutrient retention. Despite long-term restoration, vegetation often remains in the secondary shrubland stage. Soil microorganisms play a vital role in mainta...

  • Article
  • Open Access
88 Citations
5,571 Views
14 Pages

Halotolerant Microbial Consortia for Sustainable Mitigation of Salinity Stress, Growth Promotion, and Mineral Uptake in Tomato Plants and Soil Nutrient Enrichment

  • Chintan Kapadia,
  • R. Z. Sayyed,
  • Hesham Ali El Enshasy,
  • Harihar Vaidya,
  • Deepshika Sharma,
  • Nafisa Patel,
  • Roslinda Abd Malek,
  • Asad Syed,
  • Abdallah M. Elgorban and
  • Khurshid Ahmad
  • + 1 author

27 July 2021

Salinity significantly impacts the growth, development, and reproductive biology of various crops such as vegetables. The cultivable area is reduced due to the accumulation of salts and chemicals currently in use and is not amenable to a large extent...

  • Article
  • Open Access
14 Citations
5,136 Views
10 Pages

Quantity and Quality of Aquaculture Enrichments Influence Disease Epidemics and Provide Ecological Alternatives to Antibiotics

  • Anssi Karvonen,
  • Ville Räihä,
  • Ines Klemme,
  • Roghaieh Ashrafi,
  • Pekka Hyvärinen and
  • Lotta-Riina Sundberg

Environmental heterogeneity is a central component influencing the virulence and epidemiology of infectious diseases. The number and distribution of susceptible hosts determines disease transmission opportunities, shifting the epidemiological thresho...

  • Article
  • Open Access
5 Citations
3,509 Views
21 Pages

Symbiotic microorganisms in reef-building corals, including algae, bacteria, archaea, fungi, and viruses, play critical roles in the adaptation of coral hosts to adverse environmental conditions. However, their adaptation and functional relationships...

  • Article
  • Open Access
1 Citations
4,851 Views
12 Pages

Hydroponic Lettuce Cultivation with Organic Liquid Fertilizer: Examining Bacterial Inhibition and Phosphate Solubilization

  • Tomoka Endoh,
  • Michiko Takagaki,
  • Prapaipit Suwitchayanon,
  • Charturong Chanseetis and
  • Na Lu

25 October 2024

This study explores organic hydroponic cultivation as a sustainable alternative to chemical fertilizers amid global supply challenges. With rising costs and the depletion of conventional nitrogen sources, organic liquid fertilizers are gaining attent...

  • Article
  • Open Access
4 Citations
2,077 Views
16 Pages

24 June 2024

Interest in improving plant nitrogen use efficiency (NUE) in conjunction with reduced usage of nitrogen (N) fertilizers in forestry management is growing. Although biochar amendment is widely applied to increase soil nutrient availability and NUE, th...

  • Article
  • Open Access
12 Citations
3,206 Views
20 Pages

Recent studies reported that highly abundant alkane content exists in the ~11,000 m sediment of the Mariana Trench, and a few key alkane-degrading bacteria were identified in the Mariana Trench. At present, most of the studies on microbes for degradi...

  • Article
  • Open Access
6 Citations
3,564 Views
15 Pages

Minerals Determined a Special Ecological Niche and Selectively Enriched Microbial Species from Bulk Water Communities in Hot Springs

  • Fangru Li,
  • Shang Wang,
  • Qing He,
  • Wenhui Zhang,
  • Dongyi Guo,
  • Yidi Zhang,
  • Wanming Hai,
  • Yuxuan Sun,
  • Hailiang Dong and
  • Weiguo Hou

Minerals provide physical niches and supply nutrients or serve as electron donors/acceptors for microorganism survival and growth, and thus minerals and microbes co-evolved. Yet, little is known about how sediment minerals impact microbial community...

  • Article
  • Open Access
106 Views
23 Pages

Influence of Photosynthetic Cathodes on Anodic Microbial Communities in Acetate-Fed Microbial Fuel Cells Pre-Enriched Under Applied Voltage

  • Paulina Rusanowska,
  • Łukasz Barczak,
  • Adam Starowicz,
  • Katarzyna Głowacka,
  • Marcin Dębowski and
  • Marcin Zieliński

21 December 2025

Electrical stimulation is increasingly explored as a strategy to accelerate the development of electroactive biofilms in microbial fuel cells (MFCs), yet its integration with photosynthetic MFCs (pMFCs) remains insufficiently understood. This study e...

  • Article
  • Open Access
7 Citations
2,551 Views
19 Pages

Enrichment of Microbial Consortium with Hydrogenotrophic Methanogens for Biological Biogas Upgrade to Biomethane in a Bubble Reactor under Mesophilic Conditions

  • Apostolos Spyridonidis,
  • Ioanna A. Vasiliadou,
  • Panagiota Stathopoulou,
  • Athanasios Tsiamis,
  • George Tsiamis and
  • Katerina Stamatelatou

25 October 2023

The biological upgrading of biogas to simulate natural gas properties contributes to the sustainable establishment of biogas technology. It is an alternative technology to the conventional physicochemical methods applied in biomethane plants and has...

  • Article
  • Open Access
8 Citations
4,221 Views
14 Pages

Microbial Growth Dynamics in Minced Meat Enriched with Plant Powders

  • Julia Koskar,
  • Kadrin Meremäe,
  • Tõnu Püssa,
  • Dea Anton,
  • Terje Elias,
  • Reelika Rätsep,
  • Mihkel Mäesaar,
  • Karmen Kapp and
  • Mati Roasto

7 November 2022

Plant powders with antimicrobial properties can be used in food manufacturing and must comply with the demands of consumers regarding microbiological safety, nutritional value, and sensory properties of foods. The present study aimed to assess the mi...

  • Article
  • Open Access
14 Citations
3,640 Views
10 Pages

21 November 2019

Microbially induced Ca-carbonate precipitation (MICP) in general, refers to a process in which the urease secreted by microbes hydrolyzes urea to ammonium and carbon dioxide. The main objectives of this study were to identify the environmental factor...

  • Protocol
  • Open Access
23 Citations
5,326 Views
17 Pages

Despite significant technological advancements in the field of microbial ecology, cultivation and subsequent isolation of the vast majority of environmental microorganisms continues to pose challenges. Isolation of the environmental microbiomes is pr...

  • Article
  • Open Access
1 Citations
1,746 Views
18 Pages

9 February 2025

Selenium-enriched vegetables are a safe way to combat selenium deficiency in humans. Here, a new microbial selenium-enriched bacterial fertilizer (named “HJ”) was prepared and studied by dipping, and then its application strategy was opti...

  • Article
  • Open Access
10 Citations
2,433 Views
14 Pages

In this study, we developed a rapid and effective method for enriching the culture of nitrifying bioflocs (NBF) from aquacultural brackish water. The self-designed mixotrophic mediums with a single or mixed addition of sodium acetate, sodium citrate,...

  • Article
  • Open Access
982 Views
19 Pages

The industrial potential of Gastrodia elata is constrained by its distinct sensory characteristics. This work employed a computational optimization approach to refine the solid-state biotransformation using Aspergillus cristatus, aiming to boost the...

  • Article
  • Open Access
10 Citations
3,125 Views
16 Pages

Improving Phosphorus Availability and Wheat Yield in Saline Soil of the Lake Urmia Basin through Enriched Biochar and Microbial Inoculation

  • Roghayeh Mousavi,
  • MirHassan Rasouli-Sadaghiani,
  • Ebrahim Sepehr,
  • Mohsen Barin and
  • Ramesh Raju Vetukuri

To reduce requirements for conventional chemical fertilizer and alleviate salinity stress in soils, a glasshouse experiment was conducted to assess the effects of enriched biochar on phosphatase activity, microbial respiration and wheat yield in non-...

  • Article
  • Open Access
2 Citations
2,132 Views
20 Pages

Kefir Probiotic-Enriched Non-Alcoholic Beers: Microbial, Genetic, and Sensory-Chemical Assessment

  • Alessandra Souza Marques do Nascimento,
  • Raquel Nunes Almeida da Silva,
  • Pedro Paulo Lordelo Guimarães Tavares,
  • Adriana Silva Borges,
  • Marina Passos Soares Cardoso,
  • Ana Katerine de Carvalho Lima Lobato,
  • Rogéria Comastri de Castro Almeida and
  • Karina Teixeira Magalhães-Guedes

Probiotic microorganisms from sugary kefir were incorporated into Brazilian non-alcoholic beers to enhance their functional and nutritional properties through aerobic static fermentation over 24 h. Non-alcoholic beers inoculated with sugary kefir sho...

  • Article
  • Open Access
3 Citations
2,085 Views
19 Pages

Quality and Microbial Changes in Omega-3-Enriched Rabbit Meat Packaged with an Active Absorbent Pad in MAP

  • Marta Castrica,
  • Michela Contò,
  • Nour Elhouda Fehri,
  • Giulio Curone,
  • Claudia M. Balzaretti,
  • Egon Andoni,
  • Alda Quattrone,
  • Daniele Vigo,
  • Stella Agradi and
  • Laura Menchetti
  • + 4 authors

26 January 2025

This study evaluated the efficacy of an active absorbent pad (aPAD) in reducing microbial growth and enhancing the shelf life of rabbit meat stored in modified atmosphere packaging (MAP). Thigh muscles from 60 rabbits were used, divided into three di...

  • Proceeding Paper
  • Open Access
2 Citations
2,587 Views
4 Pages

Personalized dietary supplements adapted to the individual needs of athletes and the elderly enriched with microbial propionic acid were produced in form of a powder, ready to be mixed in drinks such as orange juices. Studies have shown that fresh an...

  • Article
  • Open Access
23 Citations
4,418 Views
14 Pages

Biochar and Sulphur Enriched Digestate: Utilization of Agriculture Associated Waste Products for Improved Soil Carbon and Nitrogen Content, Microbial Activity, and Plant Growth

  • Tereza Hammerschmiedt,
  • Jiri Holatko,
  • Marek Sudoma,
  • Antonin Kintl,
  • Jan Vopravil,
  • Pavel Ryant,
  • Petr Skarpa,
  • Maja Radziemska,
  • Oldrich Latal and
  • Martin Brtnicky

12 October 2021

A number of agriculture residues may be used either directly or after suitable treatment as amendments to improve soil quality. Such materials include biochar made of agriculture residues, digestate or elemental sulphur obtained from biogas desulphur...

  • Article
  • Open Access
10 Citations
2,794 Views
15 Pages

27 June 2022

Municipal solid waste management and poor fertility status of sodic soils are two important issues experienced by all developing nations including India. Disposal of municipal solid waste (MSW) being produced in huge amounts is a challenging task for...

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