Journal Description
Plants
Plants
is an international, scientific, peer-reviewed, open access journal on plant science published semimonthly online by MDPI. The Spanish Phytopathological Society (SEF), the Spanish Society of Plant Biology (SEBP), the Spanish Society of Horticultural Sciences (SECH) and the Italian Society of Phytotherapy (S.I.Fit.) are affiliated with Plants and their members receive a discount on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, PMC, PubAg, AGRIS, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q1 (Plant Sciences) / CiteScore - Q1 (Ecology, Evolution, Behavior and Systematics)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 16.5 days after submission; acceptance to publication is undertaken in 2.6 days (median values for papers published in this journal in the second half of 2025).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
4.1 (2024);
5-Year Impact Factor:
4.5 (2024)
Latest Articles
Plant Transformation States and Exposure Architecture: A Pharmacokinetic Framework for Plant-Derived Compounds in Bone Remodeling
Plants 2026, 15(10), 1541; https://doi.org/10.3390/plants15101541 (registering DOI) - 18 May 2026
Abstract
Plant-derived compounds exhibit well-documented osteogenic and anti-resorptive activities; however, their translation into consistent skeletal benefits remains limited. This review proposes a transformation-state-dependent framework in which the efficacy of plant-based interventions is interpreted through the exposure architectures they generate rather than solely through intrinsic
[...] Read more.
Plant-derived compounds exhibit well-documented osteogenic and anti-resorptive activities; however, their translation into consistent skeletal benefits remains limited. This review proposes a transformation-state-dependent framework in which the efficacy of plant-based interventions is interpreted through the exposure architectures they generate rather than solely through intrinsic molecular activity. By integrating plant matrix organization, gastrointestinal processing, microbial biotransformation, and formulation-driven pharmacokinetics with the temporal dynamics of bone remodeling, the review addresses a critical gap in the current literature, which largely evaluates phytochemicals independent of their delivery context. Across a continuum ranging from intact plant matrices to isolated compounds and advanced delivery systems, distinct pharmacokinetic regimes emerge, characterized by differences in release kinetics, metabolic transformation, systemic persistence, and target-site exposure. Representative interventions showing promising pharmacokinetic and skeletal findings include curcumin phytosome systems, resveratrol nanoformulations, icariin-loaded delivery platforms, and matrix-associated polyphenol systems capable of promoting sustained or metabolite-mediated exposure. Evidence indicates that sustained, metabolite-mediated exposure profiles are more compatible with the prolonged, cumulative nature of bone remodeling, whereas transient exposure often limits efficacy despite mechanistic activity. Formulation strategies, including phospholipid complexes, bioenhancers, and nano- or vesicle-based systems, can partially overcome these limitations by modulating exposure behavior. By reframing plant-based interventions as dynamic exposure systems, this framework provides a unifying basis for interpreting variability across studies and offers a rational foundation for designing strategies that align pharmacokinetic behavior with skeletal biology, thereby improving translational potential.
Full article
(This article belongs to the Section Phytochemistry)
Open AccessArticle
DC-FusionGNN: A Dual-Channel Framework Integrating Global Self-Attention and Local Topology Learning for Identifying Key Resistance Genes Against Fusarium graminearum Infection in Maize
by
YinFei Dai, Mengjiao Qiao, Jie Fan, ShiHao Lu, EnShuang Zhao, YuHeng Zhu, Hanbo Liu and Hao Zhang
Plants 2026, 15(10), 1540; https://doi.org/10.3390/plants15101540 - 18 May 2026
Abstract
Fusarium graminearum infection of maize induces complex transcriptional reprogramming, yet existing differential-expression and local graph convolutional approaches struggle to capture long-range and multi-scale regulatory dependencies. We propose DC-FusionGNN, a dual-channel fusion graph neural network for key resistance-gene identification. Based on the transcriptome dataset
[...] Read more.
Fusarium graminearum infection of maize induces complex transcriptional reprogramming, yet existing differential-expression and local graph convolutional approaches struggle to capture long-range and multi-scale regulatory dependencies. We propose DC-FusionGNN, a dual-channel fusion graph neural network for key resistance-gene identification. Based on the transcriptome dataset GSE174508, we first construct a comprehensive gene interaction network by integrating a WGCNA co-expression network with a STRING-based interaction network. The left channel combines structure-aware propagation with a Transformer-based global self-attention mechanism to model long-range cross-module dependencies, while the right channel couples GraphSAGE with a GCN to capture local topology and neighborhood heterogeneity. Embeddings from the two channels are concatenated to form a unified gene representation, trained via self-supervised link prediction. Compared with baseline graph neural networks, DC-FusionGNN achieves competitive and overall improved performance across multiple metrics, and robustness and independent cross-species (rice, GSE39635) experiments further confirm its stability and generalization ability. GO and KEGG enrichment analyses show that the top-ranked candidate genes are significantly enriched in plant defense responses, hormone signaling, and secondary metabolism, supporting the biological relevance of the model’s predictions.
Full article
(This article belongs to the Special Issue Applications of Bioinformatics in Plant Science)
Open AccessReview
The NRT1.1-NLP7 Nexus: An Integrative Signaling Nexus from Nitrate Sensing to Systemic Adaptation and Structure-Guided Engineering
by
Juanxia Chen, Ru Chen, Qian Li and Yihua Zhan
Plants 2026, 15(10), 1539; https://doi.org/10.3390/plants15101539 - 18 May 2026
Abstract
Nitrate functions as both a nutrient and a signaling molecule in plants, initiating genome-wide transcriptional reprogramming and systemic developmental adjustments. Traditionally, plasma membrane nitrate sensing and nuclear transcriptional responses have been considered independent processes linked through linear transduction pathways. However, recent findings reveal
[...] Read more.
Nitrate functions as both a nutrient and a signaling molecule in plants, initiating genome-wide transcriptional reprogramming and systemic developmental adjustments. Traditionally, plasma membrane nitrate sensing and nuclear transcriptional responses have been considered independent processes linked through linear transduction pathways. However, recent findings reveal that the dual-affinity nitrate transceptor NRT1.1 (NPF6.3) and the transcription factor NLP7 form an integrated signaling nexus—the Nitrate transporter 1.1 (NRT1.1)-NIN-like protein 7 (NLP7) nexus. This review examines the coupling mechanisms, including Ca2+-dependent phosphorylation cascades, nucleocytoplasmic shuttling, and a recently discovered MAPK amplification branch. We further explore the nexus’s conserved and diversified functions across crop species, and propose a three-tier rational design framework for reprogramming nitrate responses to enhance nitrogen use efficiency. By bridging structural biology and synthetic biology, this integrative perspective transitions crop improvement from empirical selection to structure-guided design, offering a roadmap for predictive crop engineering.
Full article
(This article belongs to the Special Issue Nutrient Management on Soil Microbiome Dynamics and Plant Health)
Open AccessReview
Classical Phytohormones and Peptide Plant Hormones in Abiotic Stress Tolerance: Crosstalk, Physiological Integration, and Crop Improvement
by
Baber Ali, Ayesha Imran, Hamza Iftikhar, Zeeshan Khan, Fozia Saeed, Zahid Hussain, Abdul Waheed, Arafat Abdel Hamed Abdel Latef and Nijat Imin
Plants 2026, 15(10), 1538; https://doi.org/10.3390/plants15101538 - 18 May 2026
Abstract
Plants are constantly exposed to a wide range of abiotic stresses that have significant negative impacts on growth and yield. Plant acclimation to these stresses is governed by integrated classical phytohormone and plant peptide hormone signalling networks that control the ability of a
[...] Read more.
Plants are constantly exposed to a wide range of abiotic stresses that have significant negative impacts on growth and yield. Plant acclimation to these stresses is governed by integrated classical phytohormone and plant peptide hormone signalling networks that control the ability of a plant to survive and adapt to extreme environments. Classical phytohormones, including abscisic acid, auxins, gibberellins, cytokinins, jasmonates, salicylic acid, brassinosteroids, and the recently recognised phytomelatonin, act in concert with peptide-based plant hormones, among which C-terminally encoded peptides (CEPs) play prominent roles in coordinating stress perception, signal transduction, and adaptive responses throughout the plant. These integrated networks control stomatal behaviour, photosynthesis, osmolyte and antioxidant levels, root architecture, and energy metabolism, thereby helping plants maintain homeostasis and optimise survival while sustaining minimal growth under unfavourable conditions. Under stressful conditions, these networks do not operate in isolation but form highly dynamic, context-dependent regulatory circuits in which each physiological process is simultaneously regulated by multiple hormones acting through convergent and overlapping signalling pathways. Phytomelatonin has emerged as a particularly important integrative node within these networks, functioning both as a potent direct antioxidant through sequential ROS-scavenging catabolite cascades and as a bidirectional regulator of classical phytohormone signalling under diverse abiotic stresses. New technologies in the fields of transcriptomics, proteomics, phosphoproteomics, metabolomics, and systems biology have provided new information on the dynamic relationships between classical phytohormones and plant peptide hormones, revealing candidate regulatory nodes and transcription factor networks that mediate stress adaptation at molecular, biochemical, and physiological levels. However, it is important to distinguish between correlative associations identified through omics profiling and causal regulatory relationships validated through rigorous genetic and biochemical experimentation, as most omics-derived candidates remain to be functionally established. Empirical studies demonstrate how these networks can be used to improve crops by increasing stress tolerance through modulating classical phytohormone and plant peptide hormone signalling, including through exogenous phytomelatonin application, CRISPR-mediated hormone pathway editing, and CEP pathway manipulation, to produce resilient cultivars without reducing yields. Although these advances represent significant progress, challenges remain, including the inherent complexity and redundancy of the networks, context-dependence and severity-dependence of hormonal responses, the persistence of a significant translational gap between laboratory findings and field application, and incomplete mechanistic understanding of peptide hormone roles under combined stress conditions. Addressing these challenges will require integrative multi-omics approaches, higher-order computational modelling, and rigorous field-based functional validation alongside emerging tools such as synthetic biology and precision breeding.
Full article
(This article belongs to the Special Issue Hormonal Regulation of Plant Growth and Resilience)
►▼
Show Figures

Figure 1
Open AccessArticle
Genotype-Dependent Soil Legacy of Woodland Strawberry (Fragaria vesca L.) on Plant Growth and Herbivore Resistance
by
Jiayi Liu, Anne Muola, Peter Anderson, Tuuli-Marjaana Koski, Minggang Wang and Johan A. Stenberg
Plants 2026, 15(10), 1537; https://doi.org/10.3390/plants15101537 - 18 May 2026
Abstract
Plant genotypes can vary in multiple functional traits due to adaptation to heterogenous environments. However, whether such variation can extrapolate to effects on soils and further on performance of subsequent plants, thus generating a genotypic variation in soil legacy, remains unclear. In this
[...] Read more.
Plant genotypes can vary in multiple functional traits due to adaptation to heterogenous environments. However, whether such variation can extrapolate to effects on soils and further on performance of subsequent plants, thus generating a genotypic variation in soil legacy, remains unclear. In this study, we studied how plant genotypic variation impacts soil legacy when exposed to aboveground insect herbivores. We used 11 wild genotypes of woodland strawberry (Fragaria vesca L.) experimentally exposed to leaf beetles (Galerucella tenella) to condition live soil. We then replaced the conditioning plants with naïve plants to examine soil legacy effects on growth and resistance on the subsequent plant genotype (referred to as the focal genotype) against the generalist herbivore Spodoptera littoralis. This allowed us to test the extent to which plant genotypic variation in soil legacy is altered by aboveground herbivory. We found an overall positive soil legacy effect of woodland strawberry, indicated by 69.9% higher belowground biomass of the subsequent focal genotype grown in conditioned soil compared to in unconditioned soil. We also observed a genotype-dependent soil legacy effect on performance of S. littoralis indicated as relative growth rates reduced by 37.9% on the subsequent focal genotype in soil conditioned by the focal genotype itself compared to by other genotypes, though the legacy effect was cancelled out when conditioning genotypes were exposed to G. tenella herbivory. A genotypic variation was further detected in soil legacy on the efficiency of conversion of ingested food by S. littoralis caterpillars feeding on the focal genotype. However, the genotypic variation was only present when the focal genotype was excluded from the conditioning genotypes at the exposure of G. tenella herbivory. Collectively, our study shows a conditional plant genotype-dependent soil legacy effect on herbivore resistance (measured as herbivore performance) rather than on plant growth, and the magnitude of the legacy effects depends on both the identity of the conditioning genotypes and the measures of the herbivore resistance. The findings of this study provide new insights into how plant genotypes or herbivory affects soil feedback on plant growth and herbivore resistance.
Full article
(This article belongs to the Collection Feature Papers in Plant‒Soil Interactions)
►▼
Show Figures

Figure 1
Open AccessArticle
Comparative Analysis of Physiological and Biochemical Responses Between Compatible and Incompatible Graft Combinations of Cyclocarya paliurus
by
Yiran Song, Xin Ma, Run Xu and Caowen Sun
Plants 2026, 15(10), 1536; https://doi.org/10.3390/plants15101536 - 18 May 2026
Abstract
Cyclocarya paliurus (Batal.) Iljinsk is a multipurpose tree species with great potential for development. To identify indicators of grafting compatibility during the healing process, two cloned genotypes, CR4 and CR5, were used as scions, grafted onto seedling rootstocks derived from the Guangxi provenance.
[...] Read more.
Cyclocarya paliurus (Batal.) Iljinsk is a multipurpose tree species with great potential for development. To identify indicators of grafting compatibility during the healing process, two cloned genotypes, CR4 and CR5, were used as scions, grafted onto seedling rootstocks derived from the Guangxi provenance. Following branch grafting, samples from the graft union were collected at 0, 20, 40, and 60 days. Physiological–biochemical indicators, including soluble sugars, soluble proteins, starch, peroxidase (POD) activity, polyphenol oxidase (PPO) activity, phenylalanine ammonia-lyase (PAL) activity, as well as flavonoid and phenylpropanoid contents, were analyzed. The graft survival rate of the CR4 combination (60%) was significantly higher than that of CR5 (35%). Significant differences in key physiological indicators were observed between the two scion–rootstock combinations. Analysis revealed that soluble sugar and soluble protein levels, along with POD and PAL activities in the scion during the early grafting stage, significantly influenced the final survival rate. Furthermore, lignans, lignin precursors, and several flavonoid compounds were found to accumulate preferentially at the graft union of the CR4 combination, which exhibited higher compatibility. These findings provide a physiological and biochemical foundation for selecting compatible scions and advancing clonal cultivation of C. paliurus.
Full article
(This article belongs to the Special Issue Antimicrobial, Enzyme Inhibitory and Wound-Healing Properties of Plant Extracts and Phytochemicals)
►▼
Show Figures

Figure 1
Open AccessArticle
Regulatory Mechanisms of Salinity-Induced Triterpenoid Saponin Biosynthesis in Cyclocarya paliurus Seedling Revealed by Integrated Multi-Omics Analysis and Molecular Docking
by
Kun Hong, Hui Chen, Jian Qin, Shengzuo Fang, Xulan Shang and Lei Zhang
Plants 2026, 15(10), 1535; https://doi.org/10.3390/plants15101535 - 18 May 2026
Abstract
Soil salinity is a major environmental constraint limiting plant productivity and modulating secondary metabolism. Triterpenoid saponins play crucial roles in plant stress adaptation, yet their biosynthetic regulation in Cyclocarya paliurus under salt stress remains poorly understood. This research integrated transcriptomic and metabolomic analyses
[...] Read more.
Soil salinity is a major environmental constraint limiting plant productivity and modulating secondary metabolism. Triterpenoid saponins play crucial roles in plant stress adaptation, yet their biosynthetic regulation in Cyclocarya paliurus under salt stress remains poorly understood. This research integrated transcriptomic and metabolomic analyses to investigate triterpenoid saponin metabolism in C. paliurus leaves at four NaCl concentrations and two sampling times. Salt stress altered ion homeostasis, suppressed growth, and induced distinct triterpenoid saponins accumulation patterns, with cyclocaric acid B and oleanolic acid showing significant increases. Weighted gene co-expression network analysis identified two modules significantly correlated with triterpenoid saponin accumulation and highlighted transcription factors including WRKY18, bHLH121, ERF4, and ERF1 as regulators of key biosynthetic genes (DXS, SQS, and HMGR). Molecular docking further validated these regulatory interactions, demonstrating that bHLH35, MYC2, ERF113, and MED26B form stable complexes with target gene promoters through extensive hydrogen-bond networks. These findings elucidate the regulatory framework of triterpenoid saponin metabolism under salinity and provide a foundation for molecular breeding and cultivation of C. paliurus in saline regions.
Full article
(This article belongs to the Special Issue Insights and Regulation of Plant Growth and Metabolism)
►▼
Show Figures

Figure 1
Open AccessEditorial
Plant Protection: Focusing on Plant-Feeding Mites
by
Dejan Marčić, Maria Pappas and Ismail Döker
Plants 2026, 15(10), 1534; https://doi.org/10.3390/plants15101534 - 18 May 2026
Abstract
Higher plants provide suitable habitats for mites (Acari), the second most numerous group of arthropods [...]
Full article
(This article belongs to the Special Issue Plant Protection: Focusing on Phytophagous Mites)
Open AccessEditorial
Advancing Soybean Improvement: Multi-Omics Strategies, Cutting-Edge Techniques, and Bioinformatics Innovations
by
Bahram Samanfar
Plants 2026, 15(10), 1533; https://doi.org/10.3390/plants15101533 - 18 May 2026
Abstract
Plant science research has entered a transformative era driven by rapid technological developments in high-throughput sequencing, omics-based approaches, computational biology, and precision phenotyping [...]
Full article
(This article belongs to the Special Issue Advancing Soybean Improvement: Multi-Omics Strategies, Cutting-Edge Techniques and Bioinformatics Innovations)
Open AccessArticle
Effects of Different Selenium Concentrations on Agronomic Traits, Antioxidant Defense, and Leaf Metabolome in Blueberry (Vaccinium corymbosum L. ‘Brigitta’)
by
Keqin He, Siyu Wang, Yi Zhou, Yihang Liu, Guangrong Cui and Hao Xia
Plants 2026, 15(10), 1532; https://doi.org/10.3390/plants15101532 - 17 May 2026
Abstract
►▼
Show Figures
Selenium (Se) is an important micronutrient that is required in very small amounts and plays a significant role in enhancing plant growth, stress resistance, and fruit quality. In this study, we investigated the effects of different sodium selenite concentrations (CK, 0 mg/L; Se1,
[...] Read more.
Selenium (Se) is an important micronutrient that is required in very small amounts and plays a significant role in enhancing plant growth, stress resistance, and fruit quality. In this study, we investigated the effects of different sodium selenite concentrations (CK, 0 mg/L; Se1, 0.50 mg/L; Se2, 1.00 mg/L, Se3, 2.00; and Se4, 3.00 mg/L) on the growth, nutrient absorption, antioxidant capacity, and leaf metabolome of blueberry (Vaccinium corymbosum L. ‘Brigitta’) in hydroponic culture. Our results showed that moderate Se concentration (1.00 mg/L, Se2) had noticeable enhancements in key traits like taller plants, thicker stems, a greater number of leaves, and stem fresh weight, with increases of 60.23%, 61.90%, 36.05%, and 87.97%, respectively, compared to the CK. In addition, the appropriate application of Se fertilizer (1.0 mg/L, Se2) can enhance the absorption of macronutrients by plants, with the total contents of nitrogen (N), phosphorus (P), and potassium (K) increasing by 48.11%, 15.85%, and 14.25%, respectively, compared to CK. In comparison to CK, the content and accumulation of total Se rose dramatically under the Se4 treatment, showing increases of 2300% and 2514%. The contents of chlorophyll and antioxidant enzyme activities were maximized at Se2, while excessive Se (Se4) led to oxidative damage, as indicated by elevated MDA, H2O2, and O2− levels. Moreover, metabolomic analysis revealed that moderate Se concentration (Se2) significantly altered metabolic pathways related to aminoacyl-tRNA biosynthesis, arachidonic acid metabolism, and ABC transporters, with downregulation of key metabolites in sugar and organic acid metabolism (e.g., α-D-glucose-6-phosphate, L-lactic acid, maleic acid). In contrast, high Se concentration (Se4) disrupted these pathways and promoted volatile compound accumulation. These findings demonstrate that moderate Se application enhances blueberry growth and quality by regulating nutrient uptake, antioxidant defense, and primary metabolism, whereas excessive Se induces metabolic imbalance and oxidative stress. Overall, moderate Se fertilizer (1.00 mg/L) can significantly enhance the growth and quality of blueberries, while excessive selenium may have adverse effects.
Full article

Figure 1
Open AccessArticle
Integrated Transcriptomic and Metabolomic Analyses Reveal Adaptive Mechanisms of Medicago sativa Under Water Stress
by
Yangyang Song, Nazi Niu, Yuanrong Wu, Qianqian Huo, Yuanyuan Qu and Linqiao Xi
Plants 2026, 15(10), 1531; https://doi.org/10.3390/plants15101531 - 16 May 2026
Abstract
Water stress is a major abiotic constraint limiting the growth and productivity of alfalfa (Medicago sativa L.). To elucidate the adaptive mechanisms and identify key drought-tolerance genes, physiological measurements were integrated with multi-omics analyses of cultivar ‘Tamu 1’ under three water treatments:
[...] Read more.
Water stress is a major abiotic constraint limiting the growth and productivity of alfalfa (Medicago sativa L.). To elucidate the adaptive mechanisms and identify key drought-tolerance genes, physiological measurements were integrated with multi-omics analyses of cultivar ‘Tamu 1’ under three water treatments: waterlogging (100% field water capacity), normal irrigation (80% FWC), and drought (light: 60% FWC, moderate: 40% FWC, severe: 20% FWC). Water stress markedly inhibited plant growth, induced oxidative stress, and reduced the photosynthetic capacity. Compared with waterlogging stress (DAMs: n = 71; DEGs: n = 313), drought stress resulted in a substantially greater number of differentially accumulated metabolites (DAMs, n = 1504) and differentially expressed genes (DEGs, n = 8006). Weighted gene co-expression network analysis (WGCNA) identified six key modules and ten hub genes associated with stress responses. Integrated transcriptomic and metabolomic analyses further revealed four major responsive pathways: starch and sucrose metabolism, phenylpropanoid and flavonoid metabolism, glutathione metabolism, and zeatin biosynthesis. Based on integrative criteria, including differential expression (|log2FC| ≥ 1, adjusted p < 0.05), WGCNA modules significantly associated with drought-related traits (R2 > 0.6), as well as functional annotation and protein–protein interaction (PPI) network topology, 28 candidate genes associated with drought tolerance were identified, of which six were further validated by quantitative real-time PCR (qRT-PCR). These findings highlight key metabolic pathways and regulatory modules underlying alfalfa responses to water stress and provide valuable candidate gene resources for improving drought tolerance.
Full article
(This article belongs to the Special Issue Forage and Sustainable Agriculture)
►▼
Show Figures

Figure 1
Open AccessArticle
PtCP1 Is an Extraplastidial Cysteine Protease Involved in Leaf Protein Degradation of Populus tomentosa Carr
by
Yawei Fan, Jingyi Han, Xiatong Liu, Han Liu, Mengyu Zhang, Xincaiyu Cui, Hui Li and Hai Lu
Plants 2026, 15(10), 1530; https://doi.org/10.3390/plants15101530 - 16 May 2026
Abstract
Protein turnover is essential for cellular metabolism, organelle biogenesis, stress adaptation, and ultimately the viability of cells and tissues. Papain-like cysteine proteases (PLCPs) are one of the vital components in protein degradation. PLCPs have been reported to act in senescence-associated proteolysis, but their
[...] Read more.
Protein turnover is essential for cellular metabolism, organelle biogenesis, stress adaptation, and ultimately the viability of cells and tissues. Papain-like cysteine proteases (PLCPs) are one of the vital components in protein degradation. PLCPs have been reported to act in senescence-associated proteolysis, but their roles in vegetative growth remain unclear. We identified PtCP1, an AALP-like PLCP in Populus tomentosa, localized to the vacuole and acid-triggered activated. CRISPR/Cas9-generated loss-of-function mutant (d7) showed dwarfism and non-stomatal photosynthetic limitations. On the other hand, the gain-of-function line (EM, deleted ERFNIN domain) exhibited accelerated growth and enhanced photosynthetic parameters. We showed d7 had the accumulation of Rubisco, which was the most important protein in photosynthetic carbon fixation. Transcriptomics revealed dysregulated carbon metabolism in d7. This data supported PtCP1-mediated proteolysis regulated photosynthetic carbon assimilation via altered Rubisco turnover, and then it increased the biomass accumulation during vegetative growth in woody plants.
Full article
(This article belongs to the Special Issue Molecular Biology of Chloroplast: Structure, Function and Development—2nd Edition)
►▼
Show Figures

Figure 1
Open AccessFeature PaperArticle
Arbuscular Mycorrhiza and Antagonistic Microbial Consortia Reduce Phytopathogenic Pressure and Improve Rhizosphere Functioning of Sugar Beet Under Short-Rotation Cropping Systems
by
Dmytro Kyselov, Svitlana Kalenska, Andrii Kyselov, Mykhailo Chonka and Bohdan Mazurenko
Plants 2026, 15(10), 1529; https://doi.org/10.3390/plants15101529 - 16 May 2026
Abstract
Short-rotation sugar beet (Beta vulgaris L.) cultivation in the Western Forest-Steppe of Ukraine is often accompanied by increased phytopathogenic pressure and impaired rhizosphere functioning, creating a need for biological tools to stabilize the plant–soil system. This study evaluated the effects of arbuscular
[...] Read more.
Short-rotation sugar beet (Beta vulgaris L.) cultivation in the Western Forest-Steppe of Ukraine is often accompanied by increased phytopathogenic pressure and impaired rhizosphere functioning, creating a need for biological tools to stabilize the plant–soil system. This study evaluated the effects of arbuscular mycorrhiza and an antagonistic microbial consortium on pathogen pressure, rhizosphere activity, yield, and technological quality of sugar beet under different crop rotations. Field experiments were conducted in 2023–2025 using a three-factor design that included rotation, mycorrhizal inoculation, and microbial inoculation. The highest phytopathogenic pressure was recorded in the maize–soybean–sugar beet rotation, where the cumulative frequency of dominant pathogens reached 94.0% and the root rot severity index in the control was 28.6%. Arbuscular mycorrhiza reduced disease development by 14.6–16.4%, whereas the antagonistic consortium reduced it by 25.6–27.9% relative to the control. Their combined application was most effective, decreasing root rot severity to 9.6–17.1% and increasing root colonization, available phosphorus, and dehydrogenase activity in the rhizosphere. The highest yield (80.5 t/ha) and sugar content (18.5%) were obtained in the soybean–winter wheat–sugar beet rotation under combined inoculation. AMF can improve phosphorus acquisition and mycorrhiza-induced tolerance, whereas antagonistic fungi can directly suppress soil-borne pathogens through competition, antibiosis, and mycoparasitism, their combined use may provide complementary protection in disease-conducive rotations. Overall, integrating arbuscular mycorrhiza with antagonistic microorganisms is a promising approach for reducing pathogen pressure and improving sugar beet performance in short-rotation systems.
Full article
(This article belongs to the Special Issue Application and Mechanism of Plant Biostimulants, Biochar and Fertilizer Products)
►▼
Show Figures

Figure 1
Open AccessArticle
Allelopathic Effects of Compounds from the Ethanol Extract of Artemisia frigida on Five Invasive Alien Plants
by
Nufen Li, Jiadi Zhang, Wei Hua, Lifeng Wang, Shangfeng Zhou, Kailin Liu and Haona Yang
Plants 2026, 15(10), 1528; https://doi.org/10.3390/plants15101528 - 16 May 2026
Abstract
Invasive alien plants seriously threaten native plant biodiversity and agricultural production. The development of environmentally friendly agriculture requires sustainable weed control techniques to manage these invasive alien weeds. This study evaluated the allelopathic effects of ethanol extract from Artemisia frigida against five invasive
[...] Read more.
Invasive alien plants seriously threaten native plant biodiversity and agricultural production. The development of environmentally friendly agriculture requires sustainable weed control techniques to manage these invasive alien weeds. This study evaluated the allelopathic effects of ethanol extract from Artemisia frigida against five invasive alien plants (Ageratum conyzoides, Bidens pilosa, Ipomoea purpurea, Eclipta prostrata, and Amaranthus retroflexus). The main components in the extract were identified using high-performance liquid chromatography–tandem mass spectrometry (LC-MS/MS), and we assessed their allelopathic effects on seed germination of the five species. The results showed that the ethanol extract of A. frigida completely inhibited seed germination of all five invasive plants at 5 g·L−1. Thirteen components were identified, among which 4-ethyloctanoic acid, cis-jasmone, and p-anisic acid exhibited significant inhibitory effects. Notably, 4-ethyloctanoic acid demonstrated broad-spectrum herbicidal activity. At 50 mg·L−1, it completely inhibited B. pilosa growth and had the strongest inhibitory effects on A. conyzoides and E. prostrata. This compound disrupted redox homeostasis and induced oxidative stress by modulating antioxidant enzyme activities, including superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT). These findings indicate that 4-ethyloctanoic acid is the main allelochemical with herbicidal potential in A. frigida, providing a theoretical basis for developing novel herbicides and environmentally friendly control techniques for invasive alien plants.
Full article
(This article belongs to the Section Phytochemistry)
►▼
Show Figures

Figure 1
Open AccessArticle
Localization and Functional Analysis of CtLTP8, an Extracellular Vesicle Protein That Enhances Resistance to Botrytis cinerea in Safflower
by
Kang Ma, Yongmei Luo, Kangjun Fan, Xiaoyan Wang, Jiao Liu, Rui Qin, Zhaojun Wei and Hong Liu
Plants 2026, 15(10), 1527; https://doi.org/10.3390/plants15101527 - 16 May 2026
Abstract
Safflower (Carthamus tinctorius L.) is an economically important crop, yet its production is severely threatened by fungal diseases including Botrytis cinerea. The molecular mechanism underlying disease resistance in safflower remains largely unclear. Extracellular vesicles (EVs), as vital carriers for cross-kingdom communication
[...] Read more.
Safflower (Carthamus tinctorius L.) is an economically important crop, yet its production is severely threatened by fungal diseases including Botrytis cinerea. The molecular mechanism underlying disease resistance in safflower remains largely unclear. Extracellular vesicles (EVs), as vital carriers for cross-kingdom communication and transport, play crucial roles in plant antifungal defense. Lipid transfer proteins (LTPs), members of the pathogenesis-related protein 14 family, have also been shown to be key players in plant disease resistance. The promising resistance-related candidate gene CtLTP8 was previously identified via genome-wide association study (GWAS). In this study, a genome-wide analysis of the LTP gene family in safflower was performed. EVs were isolated from the apoplastic washing fluid of B. cinerea-infected safflower leaves, and proteomic analysis was performed. Numerous proteins associated with disease resistance, including CtLTP8, were detected by proteomic profiling. CtLTP8 was found to be present in EVs through molecular biological experiments. Moreover, stable overexpression of CtLTP8 in safflower significantly increased resistance to B. cinerea. In summary, this study characterized the disease resistance-related proteome of safflower EVs, and verified the presence of CtLTP8 in EVs and its antifungal function, providing valuable gene resources and theoretical support for safflower disease-resistance breeding and research on EV-mediated plant immune mechanisms.
Full article
(This article belongs to the Special Issue Abiotic and Biotic Stress of the Crops and Horticultural Plants, 2nd Edition)
►▼
Show Figures

Figure 1
Open AccessArticle
Traditional Knowledge of Medicinal Plants Used by the Yao People in Lingyun County, Guangxi, China
by
Wei Shen, Yuefeng Zhang, Bin Huang, Xiangtao Cen, Lingling Lv, Piyaporn Saensouk, Charun Maknoi, Khwanjai Thanakornjuk, Surapon Saensouk and Tammanoon Jitpromma
Plants 2026, 15(10), 1526; https://doi.org/10.3390/plants15101526 - 16 May 2026
Abstract
►▼
Show Figures
Medicinal plants play a crucial role in primary healthcare among indigenous communities; however, systematic ethnomedicinal documentation of the Yao people in Lingyun County, Guangxi, remains limited. This study aimed to document the diversity, traditional uses, and cultural significance of medicinal plants used by
[...] Read more.
Medicinal plants play a crucial role in primary healthcare among indigenous communities; however, systematic ethnomedicinal documentation of the Yao people in Lingyun County, Guangxi, remains limited. This study aimed to document the diversity, traditional uses, and cultural significance of medicinal plants used by the Yao community. Ethnobotanical data were collected through semi-structured interviews with 104 informants. A total of 172 species belonging to 135 genera and 73 families were recorded, with Fabaceae, Lamiaceae, and Asteraceae being the most represented families. Herbs were the dominant growth form, and whole plants, roots, and shoots were the most frequently used parts, typically prepared in dried form and administered orally. Fidelity Level (FL) values ranged from 6.67 to 100, with several species showing high consensus in therapeutic use. Informant Consensus Factor (ICF) values (0.778–1.000) indicated strong agreement among informants, particularly for musculoskeletal, skin, gastrointestinal, and immune-related disorders. These findings highlight the richness and consistency of ethnomedicinal knowledge among the Yao people and provide a scientific basis for future pharmacological research, conservation planning, and the sustainable use of medicinal plant resources.
Full article

Figure 1
Open AccessArticle
Effects of Controlled-Release Fertilizer Application Rate on Growth, Physiological Traits, and Chlorophyll Fluorescence Responses of Paeonia delavayi Seedlings
by
Haizhen Tong, Guiqing He, Shuang Li, Yunfei Huang, Yue Pan and Juan Wang
Plants 2026, 15(10), 1525; https://doi.org/10.3390/plants15101525 - 16 May 2026
Abstract
Controlled-release fertilizer (CRF) improves fertilizer-use efficiency through sustained nutrient release, but its rate-dependent effects on the growth and physiology of Paeonia delavayi seedlings remain unclear. In this study, germinated seeds of P. delavayi with radicles 3–4 cm in length were grown under container
[...] Read more.
Controlled-release fertilizer (CRF) improves fertilizer-use efficiency through sustained nutrient release, but its rate-dependent effects on the growth and physiology of Paeonia delavayi seedlings remain unclear. In this study, germinated seeds of P. delavayi with radicles 3–4 cm in length were grown under container nursery conditions with four CRF application rates: (CK, 0 kg·m−3), treatment 1 (T1, 0.6 kg·m−3), treatment 2 (T2, 1.2 kg·m−3), and treatment 3 (T3, 2.4 kg·m−3). Morphological traits, root characteristics, biomass accumulation, physiological parameters, and chlorophyll fluorescence were evaluated, and Pearson correlation and fuzzy membership analyses were used to compare overall treatment performance within the tested range. CRF significantly promoted seedling height, leaf number, petiole length, and biomass accumulation, although the promoting effect did not increase continuously with fertilizer rate. By June, seedling height in T2 was 160% greater than that in CK, while aboveground biomass increased by 552% and 574% in T2 and T3, respectively. Root morphological traits were not significantly affected, suggesting that CRF primarily promoted aboveground development and biomass production. Medium and high CRF rates increased leaf superoxide dismutase (SOD) activity by 42% and 103%, respectively, and peroxidase (POD) activity by 163% and 250%, respectively. Aboveground starch content was 45% higher in T2 than in CK. In contrast, photosynthetic pigment contents and the chlorophyll a/b ratio were not significantly affected by CRF. Chlorophyll fluorescence analysis showed that Fv/Fm remained stable among CRF treatments (0.78–0.82) and was significantly higher than that in CK (0.65), whereas the actual quantum yield of PSII [Y(II)] did not differ significantly among treatments. Relative to CK, tthe quantum yield of non-photochemical quenching [Y(NPQ)] increased from 0.20 to 0.40 in T2, while the quantum yield of non-regulated energy dissipation in PSII [Y(NO)] decreased from 0.37 to 0.24–0.22 in T2–T3. Pearson correlation and fuzzy membership analyses ranked the treatments as T2 > T3 > T1 > CK, indicating that T2 performed most favorably within the tested range, although its advantage over T3 was small. Overall, an appropriate CRF rate promoted P. delavayi seedling growth and was associated with changes in biomass accumulation, antioxidant enzyme activity, carbon assimilate storage, and chlorophyll fluorescence parameters.
Full article
(This article belongs to the Section Plant Nutrition)
►▼
Show Figures

Figure 1
Open AccessArticle
Vegetation-Mediated Soil Organic Carbon Differentiation and Carbon Sequestration Strategies in a Typical Wetland of the North China Plain
by
Zonglin Shi, Yan Wang, Xiaoshuang Li, Na Zhang, Sisi Li, Yue Wang, Hongjun Lin, Yuhong Dong, Hongju Zhou, Dayong Wu and Man Cheng
Plants 2026, 15(10), 1524; https://doi.org/10.3390/plants15101524 - 16 May 2026
Abstract
Soil organic carbon (SOC) responds rapidly to vegetation changes, and exploring SOC sequestration mechanisms under different vegetation types is critical for optimizing wetland carbon sink functions. This study investigated the abiotic and biotic mechanisms driving SOC stability across four typical vegetation types (reed
[...] Read more.
Soil organic carbon (SOC) responds rapidly to vegetation changes, and exploring SOC sequestration mechanisms under different vegetation types is critical for optimizing wetland carbon sink functions. This study investigated the abiotic and biotic mechanisms driving SOC stability across four typical vegetation types (reed marsh, woodland, farmland, and wasteland) in the 0–10 cm and 10–20 cm soil layers of Hengshui Lake wetland. Results showed that reed marshes exhibited the highest total organic carbon (TOC) and particulate organic carbon (POC), owing to anaerobic soil conditions and stable macroaggregate physical protection. Woodlands accumulated higher dissolved organic carbon (DOC) and microbial biomass carbon (MBC) via an efficient microbial carbon pump, despite weaker aggregate stability. In contrast, farmlands and wastelands presented intense labile organic carbon (LOC) turnover and enzymatic decomposition, accelerating SOC mineralization and carbon dissipation with poor carbon sequestration capacity. Proteobacteria and Acidobacteriota dominated bacterial communities, while Ascomycota prevailed in fungi. Soil water content (SWC) and bulk density (BD) were the core drivers of microbial community succession, and fungi were more sensitive to vegetation changes. Conclusively, distinct vegetation types shape divergent SOC sequestration pathways. This work provides a theoretical basis for wetland restoration and regional carbon sink enhancement.
Full article
(This article belongs to the Special Issue Soil-Water Contamination and Ecological Restoration Using Plants)
►▼
Show Figures

Figure 1
Open AccessArticle
Activity-Based Profiling of Papain-like Cysteine Proteases in Different Plant Organs During Barley Development
by
Igor A. Schepetkin and Andreas M. Fischer
Plants 2026, 15(10), 1523; https://doi.org/10.3390/plants15101523 - 16 May 2026
Abstract
Papain-like cysteine proteases (PLCPs) are vital enzymes involved in plant development, acting as key regulators of processes such as seed germination, nutrient mobilization, senescence, and programmed cell death. In the present study, we analyzed active PLCPs in various barley organs, including roots, leaves,
[...] Read more.
Papain-like cysteine proteases (PLCPs) are vital enzymes involved in plant development, acting as key regulators of processes such as seed germination, nutrient mobilization, senescence, and programmed cell death. In the present study, we analyzed active PLCPs in various barley organs, including roots, leaves, stems, and seeds at different stages of plant development. Protein extracts obtained from barley samples (4-day-old seedlings; plants at 2, 4, 7, and 11 weeks after sowing; developing seeds from 11-week-old plants; and mature dry seeds) were subjected to anion-exchange chromatography. Fractions containing active PLCPs were pooled, biotinylated using the DCG-04 probe, affinity-purified using streptavidin-agarose, and subsequently analyzed via SDS-PAGE. Bands corresponding to biotinylated PLCPs (detected using streptavidin-peroxidase and a chemiluminescent substrate) were excised from the gel and analyzed by tandem mass spectrometry, enabling the identification of up to 23 distinct PLCPs belonging to nine known PLCP subfamilies. Among the identified PLCPs, HvPap-6 from the L-like D subfamily proved to be the most abundant across all barley samples. In seedlings, B-like and L-like D proteases constituted the largest proportion of all PLCP classes, and their levels continued to increase as the plants developed. Although the relative abundance of L-like B and L-like C proteases was high in seedlings, their levels declined in the roots and leaves of developing plants, as three PLCPs from the L-like B subfamily were identified only during the seedling stage. These results suggest that L-like B and L-like C proteases play an important role in seed germination and seedling development. Organ-specific expression was also observed for certain PLCPs: HvPap-26 from the L-Like C subfamily was identified only in the shoots and roots of seedlings; four PLCPs of the L-like E subfamily were detected solely in the roots, whereas two other proteases from this subfamily were identified exclusively in the leaves and shoots under our experimental conditions. Thus, our results suggest that certain active PLCPs are organ-specific, and that the relative importance of identified PLCPs varies within these organs during plant development.
Full article
(This article belongs to the Special Issue Barley—a Versatile Crop for Innovative and Sustainable Food Production (2nd Edition))
►▼
Show Figures

Figure 1
Open AccessArticle
QTL Mapping and Candidate Gene Prediction for Crude Protein Content in Sweetpotato (Ipomoea batatas (L.) Lam.)
by
Donglan Zhao, Jie Wang, Lingxiao Zhao, Shizhuo Xiao, Xibin Dai, An Zhang, Rui Yuan, Yao Wang, Qinglian Li, Tong Ning, Zhilin Zhou and Qinghe Cao
Plants 2026, 15(10), 1522; https://doi.org/10.3390/plants15101522 - 16 May 2026
Abstract
Sweetpotato (Ipomoea batatas (L.) Lam.) is an important multifunctional crop with great value in food supply, industrial processing and bioenergy utilization. Crude protein content (CPC) is a core target trait for sweetpotato quality breeding. To dissect the genetic basis of CPC and
[...] Read more.
Sweetpotato (Ipomoea batatas (L.) Lam.) is an important multifunctional crop with great value in food supply, industrial processing and bioenergy utilization. Crude protein content (CPC) is a core target trait for sweetpotato quality breeding. To dissect the genetic basis of CPC and identify key candidate genes, we used an F1 population of 212 individuals. CPC was measured by near-infrared reflectance spectroscopy (NIRS) in 2020 and 2021, and QTL mapping was performed using a high-density SNP genetic linkage map. Candidate genes were explored via a genome-wide association study (GWAS), multiple-database functional annotation, and quantitative real-time PCR (qPCR) validation. The results showed that: (1) CPC in the population exhibited a continuous normal distribution with high inter-year stability, and phenotypic variation was mainly controlled by genetic factors; (2) one stable minor-effect QTL for CPC, qCPC09-1, was mapped to Chr09: 7906895–8614924 bp, explaining 5.7% of phenotypic variation; (3) GWAS detected no significant SNP loci, suggesting that CPC is regulated by multiple minor-effect genes; (4) genes within the qCPC09-1 interval were significantly enriched in three protein synthesis-related KEGG pathways: ribosome, nitrogen metabolism and ubiquinone and other terpenoid–quinone biosynthesis; (5) qPCR verified that itf09g13420 and itf09g13230 were upregulated in the low-CPC parent Yushu 10 and negatively correlated with CPC, while itf09g13550 was upregulated in the high-CPC parent Xin 24 and positively correlated with CPC. These three genes exhibited expression patterns highly consistent with phenotypic differences. This study provides a theoretical basis and technical support for molecular marker-assisted breeding and elite germplasm innovation in sweetpotato.
Full article
(This article belongs to the Special Issue Trends and Challenges for Sustainable Sweetpotatoes Cultivation/Production)
►▼
Show Figures

Figure 1
Journal Menu
► ▼ Journal Menu-
- Plants Home
- Aims & Scope
- Editorial Board
- Reviewer Board
- Topical Advisory Panel
- Instructions for Authors
- Special Issues
- Topics
- Sections & Collections
- Article Processing Charge
- Indexing & Archiving
- Editor’s Choice Articles
- Most Cited & Viewed
- Journal Statistics
- Journal History
- Journal Awards
- Society Collaborations
- Conferences
- Editorial Office
Journal Browser
► ▼ Journal BrowserHighly Accessed Articles
Latest Books
E-Mail Alert
News
Topics
Topic in
Agronomy, Crops, Plants
Abiotic Stress Responses in Wheat: Perspectives on Productivity and Sustainability
Topic Editors: Wenshan Guo, Jinfeng Ding, Min ZhuDeadline: 22 May 2026
Topic in
IJMS, Agronomy, Plants, CIMB
Leguminomics: From Genomic Blueprints to Sustainable Agriculture
Topic Editors: Qingshan Chen, Dawei XinDeadline: 31 May 2026
Topic in
Agronomy, Crops, Foods, Plants, Agriculture, Horticulturae
Multidisciplinary Advances in Tea Science: Smart Cultivation, Digital Processing, and Health Innovation
Topic Editors: Chunwang Dong, Lin Chen, Yang LiDeadline: 30 June 2026
Topic in
Agriculture, Agronomy, Ecologies, IJPB, Plants, Soil Systems
The Role of Plant-Soil Interactions on Crop Yields and Carbon Sequestration
Topic Editors: Jifu Ma, Meng Zhou, Caiqing QinDeadline: 31 July 2026
Conferences
Special Issues
Special Issue in
Plants
The Quantum Dance of Photosynthesis: Current View of the Role of Quantum Effects in the Absorption of Light Energy
Guest Editors: Yuxiang Weng, Bernhard HuchzermeyerDeadline: 20 May 2026
Special Issue in
Plants
Technologies, Applications and Innovations in Plant Genetics Research
Guest Editors: Cristina Barrero Sicilia, Emidio AlbertiniDeadline: 20 May 2026
Special Issue in
Plants
Soil Fertility, Plant Nutrition and Sustainable Agriculture
Guest Editor: Javier Hernández-AllicaDeadline: 20 May 2026
Special Issue in
Plants
Phytochemical Extraction and Electrochemical Innovations in Sustainable Plant Science
Guest Editor: Felipe de Moura SouzaDeadline: 20 May 2026
Topical Collections
Topical Collection in
Plants
Feature Review Papers in Phytochemistry
Collection Editor: Mariangela Marrelli
Topical Collection in
Plants
New Trends in Plant Science in Italy
Collection Editor: Massimo Galbiati
Topical Collection in
Plants
Selected Papers from Lithuanian Research Centre for Agriculture and Forestry
Collection Editors: Giedrė Samuolienė, Gražina Kadžienė, Darius Kviklys, Neringa Rasiukeviciute





