Oceans

Coastal shellfish farming areas in northern China seas face frequent starfish outbreaks, particularly from Asterias amurensis and Patiria pectinifera, leading to significant economic losses. Genomic data are key to understanding the population dynamics and adaptive traits and developing effective control measures for these species. Here, we characterized and compared the genomic information of these two starfish using a whole-genome survey approach. The genome size of A. amurensis is ~477 Mb with 1.52% heterozygosity, 53.60% repetitive sequences, and 39.94% GC content, while P. pectinifera has a ~529 Mb genome, 2.90% heterozygosity, 56.02% repetitive sequences, and 40.63% GC content. Scaffold N50 values were 1823 bp for A. amurensis and 1328 bp for P. pectinifera. We identified 161,786 microsatellite motifs in A. amurensis and 316,245 in P. pectinifera, with mononucleotide repeats being the most common. A total of 171 single-copy homologous genes were found in A. amurensis, with 94 in P. pectinifera. For both species, KEGG annotation showed functional similarities in glycan biosynthesis, translation, metabolism, catabolism, and transport. The Pairwise Sequentially Markovian Coalescent (PSMC) analysis unveiled a bottleneck effect during the Pleistocene glaciation. Additionally, phylogenetic analysis of mitochondrial genomes indicates that P. pectinifera and Patiria miniata of the same genus belong to the same branch in the evolutionary tree as sister groups with the closest genetic relationship, while A. amurensis is most closely related to Astropecten polyacanthus within the class Asteroidea. These findings provide valuable genomic insights for both species. Full article

The Eastern Aegean Sea hosts a diverse assemblage of elasmobranchs, many of which are vulnerable or endangered. This study presents a fishery-independent assessment of species composition, catch characteristics, and spatial patterns in bottom trawl fisheries between Lesvos Island and Ayvalik. A total of 48 surveys were conducted between September 2022 and October 2024, identifying nine elasmobranch species, with Scyliorhinus canicula (small-spotted catshark) and Mustelus mustelus (common smooth-hound) dominating the catch. Biological parameters, sex ratios, and condition upon capture and release were recorded, while catch per unit effort (CPUE) and diversity indices were used to evaluate temporal patterns. The survival probability was negatively affected by the trawl duration and elevated temperatures, emphasizing the need for mitigation measures. Spatial models revealed high-density zones that likely function as foraging or nursery grounds. Seasonal shifts in community composition were also evident. Many non-commercial species were discarded irrespective of their size or condition. These findings underscore the ecological importance of this understudied region and support the need for spatially explicit, species-specific management strategies, including gear selectivity improvements, seasonal closures, and Electronic Monitoring. The study offers a critical baseline for enhancing the sustainability of elasmobranch populations in the Eastern Mediterranean. Full article

Echinometra lucunter, the most abundant sea urchin in Brazil, causes numerous accidents by puncture wounds, primarily on hands and feet. Beyond mechanical trauma, recent research has identified bioactive molecules in spine extracts and coelomic fluid contributing to these inflammatory reactions. This study investigated spine morphology to better understand the envenomation and defense processes for the animal. Using various microscopy techniques, the spines were revealed to be mineral structures with longitudinal canals and a sponge-like central mesh rich in granular cells. These cells extend from the spine’s center to its edges, terminating in fimbriae-like structures, likely involved in molecular exchange with the environment. The spine tip is more cellular than the base, suggesting a defensive role, while the base provides structural support. Several cell types were identified, including granulocytes, red spherulocytes, and phagocytic amoebocytes, also found in the coelomic fluid. Other cells displayed prominent Golgi apparatuses and secretory granules, indicating specialized secretory functions, likely the source of bioactive molecules involved in chemical defense and spine regeneration. Understanding this cellular structure is crucial for comprehending the urchin’s envenomation and defense mechanisms. Full article

Light is considered an important co-factor in causing thermal bleaching in photosymbiotic corals. To quantify the effects of light strength on thermal bleaching, colonies of the stony coral Stylophora pistillata were experimentally subjected to a gradual increase in temperature (1 °C per 4 days) under two irradiance levels: 100 and 500 µmole quanta m⁻² s⁻¹. Corals kept under the same irradiance levels at a constant temperature of 26 °C were used as controls. The apparent photochemical yield ΔF/Fm′ of Photosystem II of the coral symbionts was monitored daily as an indicator for the onset of thermal bleaching, the onset of bleaching being defined as a steep decrease in ΔF/Fm′. In heat-treated corals incubated under the high irradiance of 500 µmole quanta m⁻² s⁻¹, the onset of bleaching occurred 26 days after the start of the heat ramp, at a temperature of 33 °C. ΔF/Fm′ in corals incubated under the low irradiance of 100 µmole quanta m⁻² s⁻¹ started to drop 1 day later at the same temperature. Before and after the observed drop in ΔF/Fm′, coral samples were taken for analysis of symbiont densities and levels of chlorophyll-a. At the onset of bleaching, symbiont densities and chlorophyll-a levels in heat-treated corals were not different from those of corals kept under control conditions. Three days after the onset of bleaching, symbiont densities and levels of chlorophyll-a in heat-treated corals had substantially decreased in comparison to controls. Under low irradiance, symbiont density and chlorophyll-a content were 84% and 76% lower than controls, respectively, whereas under high irradiance, symbiont density and chlorophyll-a content were 41% and 46% lower. These data suggest that damage to the photosystem in coral symbionts is the root cause of thermal bleaching in symbiotic corals, followed later by a collapse of the symbiosis. The role of light in augmenting thermal bleaching was only moderate, with a five-fold reduction in irradiance causing only a 1-day delay in bleaching. These results suggest that temperature is the main driver of bleaching in the studied coral. Full article

The use of multiple sampling instruments during ichthyoplankton surveys could require a significant amount of time for sample collection procedures; moreover, their use is highly dependent on weather conditions. During surveys aimed at the application of the Daily Egg Production Method (DEPM), two different kinds of sampler are employed: PairoVET and Bongo 40. The possibility of using only one of these samplers may allow for a reduction in the sampling time on board and the subsequent analyses; thus, a study was carried out to test the use of the Bongo 40 sampler alone (i.e., without PairoVET sampling) in DEPM application. Samples collected during five ichthyoplankton surveys (from 2007 to 2010 and in 2014) were analyzed to compare the efficiency in anchovy egg collection. Although the compared ichthyoplankton samplers provided differences in the collected number of eggs, as well as in the filtered volume, non-significant differences between them were recorded in the egg density. An ANCOVA revealed a significant relationship (F_1,5 = 606.80; p < 0.001) between the density estimates from the two nets, but no differences were recorded among years (F_1,5 = 0.99; p < 1). The slopes of the linear regressions for the two datasets were close to 1, suggesting a substantial equivalence of the two samplers in estimating the egg density. Finally, since only a few sampling stations showed densities higher than 20 ind. m⁻², conversion equations were provided to estimate the PairoVET density from the Bongo 40 data at different density levels (i.e., 20 ind. m⁻² or higher). Full article

Ulva intestinalis holds promise for sustainable aquaculture in the Baltic Sea, but success has so far been limited by high environmental variability. This study examines how environmental factors influence sporogenesis, attachment, and growth of U. intestinalis in the low-salinity Baltic Sea. Optimal sporogenesis was observed at nutrient levels of 4–7 g/L, with peak zoospore release at 22–24 °C. Artificial substrates showed limited attachment success, as competing algae like Pylaiella littoralis and Cladophora glomerata often outperformed Ulva. Mesh cage cultivation demonstrated potential, achieving growth rates similar to controlled systems, though storm-induced turbidity lowered growth. These findings highlight the importance of tailored Baltic Sea cultivation strategies, focusing on nutrient, temperature, water stability, and competition management to enhance Ulva production. As the first pilot experiments in the region, they provide essential input for developing informed strategies that support more detailed trials and future scaled-up production. Full article

Artificial ocean alkalinization (AOA) is one of the most promising marine carbon dioxide removal technologies, but its influence on marine carbon chemistry remains unclear. We applied data from the Sixth Coupled Model Intercomparison Project (CMIP6) to characterize the temporal and spatial variabilities of future marine carbon chemistry under the implementation of AOA. Our study shows that the marine carbon system varied significantly under the implementation of AOA, but some specific effects may be masked by the forcing of the high carbon emission scenario SSP5-8.5. Based on the CMIP6 protocol, which added 0.14 Pmol of alkalinity into the ocean annually, AOA promoted an increase in DIC, delayed the rise in pCO₂, and mitigated declines in pH and Ω, respectively. The temperate oceans in both hemispheres were the most significantly impacted basins, whereas the Southern Ocean was the least affected. During this century, the oceanic carbon sink is expected to intensify rapidly until around the year 2080, and then gradually weaken. The implementation of AOA merely changed the relative strength of the oceanic sink, rather than its overall variation pattern. Furthermore, in the deep ocean, the effect of AOA was present but quite limited in mitigating ocean acidification. Full article

The multi-band atmospheric correction algorithms, now referred to as remote sensing reflectance (R_rs) algorithms, have been implemented on a NASA computing facility for global remote sensing of ocean color and atmospheric aerosol parameters from data acquired with several satellite instruments, including the Visible Infrared Imaging Radiometer Suite (VIIRS) on board the Suomi spacecraft platform. These algorithms are based on the 2-band version of the SeaWiFS (Sea-Viewing Wide Field-of-View Sensor) algorithm. The bands centered near 0.75 and 0.865 μm are used for atmospheric corrections. In order to obtain high-quality R_rs values over Case 1 waters (deep clear ocean waters), strict masking criteria are implemented inside these algorithms to mask out thin clouds and very turbid water pixels. As a result, R_rs values are often not retrieved over bright Case 2 waters. Through our analysis of VIIRS data, we have found that spatial features of bright Case 2 waters are observed in VIIRS visible band images contaminated by thin cirrus clouds. In this article, we describe methods of combining cirrus and aerosol corrections to improve spatial coverage in R_rs retrievals over Case 2 waters. One method is to remove cirrus cloud effects using our previously developed operational VIIRS cirrus reflectance algorithm and then to perform atmospheric corrections with our updated version of the spectrum-matching algorithm, which uses shortwave IR (SWIR) bands above 1 μm for retrieving atmospheric aerosol parameters and extrapolates the aerosol parameters to the visible region to retrieve water-leaving reflectances of VIIRS visible bands. Another method is to remove the cirrus effect first and then make empirical atmospheric and sun glint corrections for water-leaving reflectance retrievals. The two methods produce comparable retrieved results, but the second method is about 20 times faster than the spectrum-matching method. We compare our retrieved results with those obtained from the NASA VIIRS R_rs algorithm. We will show that the assumption of zero water-leaving reflectance for the VIIRS band centered at 0.75 μm (M6) over Case 2 waters with the NASA R_rs algorithm can sometimes result in slight underestimates of water-leaving reflectances of visible bands over Case 2 waters, where the M6 band water-leaving reflectances are actually not equal to zero. We will also show conclusively that the assumption of thin cirrus clouds as ‘white’ aerosols during atmospheric correction processes results in overestimates of aerosol optical thicknesses and underestimates of aerosol Ångström coefficients. Full article

The air–sea transfer of gases is important within climate physics, biogeochemistry and the control of pollutants. A two-layer model of transfer directly across the sea surface underpins most discourse, but an expanding literature also features transfer mediated by “suspended fragments”, either bubbles in the upper ocean or drops and aerosol in the lower atmosphere. In this study, we describe a categorization of process that elucidates departures from two-layer theory and is a starting point for quantification. On counting the distinct phenomena and their application to gases of various solubility, a total of eight categories are identified. Each category has a distinct scaling with respect to the properties of the gas and this is key to the relative importance of different categories and processes. Transfer through sea spray can be an exchange process, but the evaporation of sea spray is more effective and is an ejection process. The reactivity of carbon dioxide in aqueous solution enhances the effect of spray. Exceptional levels of sea spray generation and evaporation are required to be significant for most gases, but moderate levels are sufficient for carbon dioxide and the most soluble pollutants. Full article

The shells of dead Pinna nobilis individuals are important habitats in sedimentary coastal ecosystems, yet their ecological role is poorly understood. This study investigated macrofaunal communities associated with 80 P. nobilis shells from Soline Bay and Valovine Bay, northern Adriatic, analyzing variations in species abundance and biodiversity between shell orientations (vertical and horizontal) and across seasons. Shell dimensions were recorded, with larger shells and higher faunal abundance observed in Soline Bay compared to Valovine Bay. A total of 2225 individuals representing 183 species across 19 taxonomic groups were identified, with Malacostraca, Bivalvia, and Polychaeta being the most abundant. Vertically positioned shells hosted significantly more organisms than horizontally positioned ones, likely due to greater available surface area for settlement. Seasonal changes influenced organism abundance, with peaks in winter for Valovine Bay and spring for Soline Bay, correlating with environmental factors such as eutrophication. The most frequent species associated with the shells of dead individuals were the polychaete Sabella spallanzanii and the bivalve Rocellaria dubia, which can impact shell degradation. Despite their temporary nature, the shells of dead P. nobilis provide vital refuge and enhance biodiversity. The findings underscore the ecological importance of P. nobilis shells as biodiversity hotspots and highlight the need for their conservation and further study. Full article

The Ligurian Sea, located in the northwestern Mediterranean, is undergoing a dramatic shift in fish biodiversity due to climate change and species immigration. This study adopted a citizen science approach to provide new data on the current distribution of rare, thermophilic, and alien fish species in the Ligurian Sea. Observations were collected through social networks and personal acquaintances, involving fishermen, divers, and fishmongers. We obtained a total of 47 records, encompassing 18 species belonging to 18 different fish families. Considering existing literature, some species appear to prefer this part of the Mediterranean Sea, likely due to the Ligurian Sea’s unique hydrodynamic and oceanographic conditions that support nutrient-rich environments. Others appear to be less common in the region, probably due to the lower temperatures of the Ligurian Sea compared to other Mediterranean sectors. Our findings emphasize the dual and controversial role of the Ligurian Sea as a refuge for cold-adapted species and a hotspot for thermophilic invaders. Moreover, this research highlights the role of citizen science in complementing traditional survey approaches, providing an efficient tool to monitor many taxa across several diverse ecological niches. Full article

Submarine pipelines laid across navigational channels are highly susceptible to anchor drop impacts, which can cause deformation and disrupt normal pipeline operations. In severe cases, anchor impacts may lead to oil and gas leaks, resulting in significant economic losses and environmental damage. To ensure the safe operation of submarine pipelines, artificial rock backfilling is widely employed as a protective measure. Compared with complex pipeline protection structures, this approach is both cost-effective and efficient. In the physical model experiment, a combination of total force sensors and thin-film sensors was used to measure the dynamic response of pipelines under anchor impact. Additionally, The FEM-DEM numerical method was used to simulate the dynamic response and interaction process of anchor impact on the rock protection layer and pipeline. Numerical results were compared with experimental data to analyze the effects of rock protection layer thickness, backfill rock particle size, and pipeline sublayer types on pipeline impact response. The results show a good agreement between the physical model tests and numerical simulation studies, revealing several factors that influence the mitigation effect of the rock protection layer. This study provides a valuable scientific reference for the installation of rock protection layers for pipelines. Full article

Due to the excellent concealment and high mobility, multiple small spherical underwater robots are essential for near coast defending missions. The formation of multiple small spherical underwater robots is particularly effective for tasks such as patrolling, reconnaissance, surveillance, and capturing sensitive targets. Moreover, some tasks need higher flexibility and mobility, such as reconnaissance, surveillance, or target encirclement at fixed locations. For this purpose, this paper proposes a position-based formation mechanism which is easily deployed for multiple spherical robots. A position planning method during the formation process is designed. This method creatively integrates the virtual linkage strategy with an improved consensus algorithm and the artificial potential field (APF) method. The virtual linkage strategy is in charge of computing the global formation desired target positions for robots according to the predefined position of the virtual leader joint. The improved consensus algorithm and APF are responsible for planning the local desired positions between two formation desired target positions, which is able to prevent collisions and excessive communication distance between robots. In order to verify the effectiveness of the proposed formation mechanism, adequate simulations and experiments are conducted. Thereby, the proposed formation frame offers great potential for future practical marine operations of the underwater multi-small robot systems. Full article

Global oyster reefs have suffered severe degradation due to human activities, environmental pollution, and climate change. The construction of artificial reefs offers a promising strategy to enhance oyster recruitment and mitigate population decline. However, the factors influencing oyster recruitment in artificial frameworks remain largely unclear, and it is still challenging to evaluate the effectiveness of different restoration methods. In this study, a series of oyster reef restoration experiments were conducted in the Tianjin coastal zone to identify key factors affecting recruitment success. These factors included restoration methods (shell string, mesh bag, and mesh cage), seeding with juvenile oysters, oyster shell orientation, and cultch hanging height. Our results indicated that the mesh bag method achieved the highest oyster settlement density in the intertidal zone, while the shell string method supported the fastest growth rates of oysters in the subtidal zone. The lower hanging height of cultches in the artificial frames increased oyster settlement density; however, hanging the cultches too close to the sediment negatively impacted oyster growth rates. Additionally, seeding with juvenile oysters and orienting the rough side of the shell upward enhanced recruitment performance. Oyster settlement density was greater in the intertidal zone (Bagua Shoal) compared to the subtidal zone (Dashentang), while oysters in the subtidal zone exhibited faster growth rates. Using redundancy analysis, the influence of environmental factors on the oyster recruitment performance was assessed. Oyster growth in the subtidal zone was positively correlated with dissolved oxygen and pH, whereas oyster settlement density in the intertidal zone was positively associated with water temperature, chlorophyll a concentration, and salinity. Finally, we evaluated the effectiveness of different restoration methods by considering factors including reef construction costs, oyster settlement abundance, average daily shell growth rate, water purification potential, and reef subsidence. Our results demonstrated that the shell string method was the most effective in the Dashentang subtidal zone, while the mesh bag method with oyster seeding was optimal in the Bagua Shoal intertidal zone. Our findings can provide valuable insights and guidance for oyster reef restoration projects. Full article

Marine mammals may be particularly vulnerable to climate change. While some climate-change-induced impacts on these species have been recognised, the potential consequences of storminess have been less well-defined, and understanding of its significance largely relies on anecdotal evidence. To quantify the relationship between storminess and its possible impacts on grey seal pups (Halichoerus grypus), data from marine wildlife rescue databases and hospitalisation records (2015–2024) within the British Isles were examined (n = 20,686). Daily mean windspeed was used as a proxy for storminess. Significant relationships were found between storminess and pups presenting with malnourishment, head trauma, flipper injury, other wounds, and infections. This study provides the first empirical evidence of the explicit impacts of storminess on seal pup health, with all the presenting conditions increasing and higher rates of call-outs and pup admissions to rescue centres following stormy weather also recorded. Given the predicted increase in storm severity, these findings will aid rescue and rehabilitation planning by helping to predict when rescuers can anticipate increased admissions and the potential injuries that pups may experience following storms. The potential significance to the long-term conservation of the species is also highlighted. Full article

Environmental heterogeneity is especially important in determining the distribution and spatial management of marine mammals. Intra-annual changes in distribution exhibited by highly mobile species such as baleen whales, however, present a challenge to traditional area-based management measures which should be accounted for in the designations, but these data are typically lacking. In the present study, we investigated the seasonal variables influencing the spatio-temporal distribution of feeding/foraging minke whales in the Southern Trench MPA in northeast Scotland. A presence–absence model was selected to determine the associations of feeding/foraging whales with areas of high prey density and other environmental determinants. Whale presence was strongly correlated with high burrowed sandeel density (BSD) in May and June and offshore thermal fronts (derived from the standard deviation of sea-surface temperature (SST SD)) from June to September. Both were concluded to be valuable proxies for the distribution of available prey and provided a compelling explanation for observed spatio-temporal shifts and high intraannual variability of whales from our long-term data. The present findings illustrate the value of prey data inclusion in habitat models for baleen whales on their feeding grounds, and advocate for a more dynamic, ecosystem-based approach to management for these highly mobile protected whales. Full article

This paper describes and implements a time-spatial correction of the regional prediction wave system, compared with altimeter data, by using an ensemble Kalman filter. The technique is successful in areas with substantial wave height around the Azores islands. Using winds from ERA5 and wave spectral boundary conditions from a prior study, the SWAN wave model generates wave conditions in the Azores area for 6 years. The time-spatial correction model is determined by comparing the hindcast data with the data from seven altimetry satellites: ERS-1, ERS-2, ENVISAT, TOPEX/POSEIDON, Jason-1, Jason 2, and GEOSAT Follow ON. The hindcast results are then corrected with the correction model. Furthermore, in situ buoy measurements are then employed to validate the corrected hindcast data. The outcomes demonstrate a significant improvement in the wave predictions. Full article