Journal Description
Oceans
Oceans
is an international, peer-reviewed, open access journal of oceanography, published bimonthly online by MDPI.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, ESCI (Web of Science), AGRIS, and other databases.
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 38.6 days after submission; acceptance to publication is undertaken in 5.5 days (median values for papers published in this journal in the first half of 2025).
- Journal Rank: CiteScore - Q2 (Oceanography)
- Recognition of Reviewers: APC discount vouchers, optional signed peer review and reviewer names are published annually in the journal.
- Journal Clusters of Water Resources: Water, Journal of Marine Science and Engineering, Hydrology, Resources, Oceans, Limnological Review, Coasts.
Impact Factor:
1.6 (2024);
5-Year Impact Factor:
1.9 (2024)
Latest Articles
Annotated Checklist and Biodiversity of Sea Cucumbers (Holothuroidea) in Indian Waters
Oceans 2025, 6(4), 85; https://doi.org/10.3390/oceans6040085 - 18 Dec 2025
Abstract
Holothuroids play a vital role in nutrient cycling and bioturbation to enhance the marine ecosystem. They enhance the biodiversity for various symbiotic marine organisms by providing essential shelter and spawning grounds. This review focuses on the Class Holothuroidea (Phylum Echinodermata) in Indian waters,
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Holothuroids play a vital role in nutrient cycling and bioturbation to enhance the marine ecosystem. They enhance the biodiversity for various symbiotic marine organisms by providing essential shelter and spawning grounds. This review focuses on the Class Holothuroidea (Phylum Echinodermata) in Indian waters, encompassing a total of 187 species organized into 7 orders and 21 families. Notably, the order Holothuriida represents the largest proportion of species, accounting for 27%. These species are well-distributed across India, with the Andaman and Nicobar Islands exhibiting the highest level of species richness (107 species), followed by the East Coast (102 species), Lakshadweep (39 species), and the West Coast (34 species). Species diversity was assessed using the Shannon–Weiner diversity index. Results indicate that the Andaman and Nicobar Islands (H’ = 2.23) and the West Coast (H’ = 2.14) demonstrate the highest levels of diversity. This review provides a comprehensive and precise inventory of all species of Holothuroidea reported in Indian waters, which is provided to facilitate understanding of the reported species, their systematics, and distribution. In addition, a significant insight for both conservation and management of sea cucumbers in India has also been provided.
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(This article belongs to the Topic Conservation and Management of Marine Ecosystems)
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Open AccessFeature PaperArticle
Trophic Ecology of the Devil Firefish Pterois miles in the Eastern Mediterranean: An Integrated Study Based on Stomach Content and Stable Isotope Analyses
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Kassandra Zannaki, Ioannis E. Batjakas, Gerasimos Kondylatos, Maria Corsini-Foka, Chrysoula Gubili, Evangelia Krasakopoulou, Ernesto Azzurro and Emanuela Fanelli
Oceans 2025, 6(4), 84; https://doi.org/10.3390/oceans6040084 - 12 Dec 2025
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Τhe trophic ecology of Pterois miles in the Mediterranean Sea was performed by integrating data from stomach contents (SCA) and stable isotopes analyses (SIA), based on samples caught off the Greek island of Rhodes, SE, Aegean Sea, for the first time. This combined
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Τhe trophic ecology of Pterois miles in the Mediterranean Sea was performed by integrating data from stomach contents (SCA) and stable isotopes analyses (SIA), based on samples caught off the Greek island of Rhodes, SE, Aegean Sea, for the first time. This combined approach provides information on ingested (SCA) and assimilated (SIA) food and thus allows for the depiction of predator–prey relationships. Specimens of devil firefish, including both juveniles and adults (total length of analyzed specimens spanned from 11.40 to 31.50 cm), were collected from different sites around Rhodes. Their diet consisted of bony fish, cephalopods, crustaceans, and gastropods. The δ13C and δ15N values ranged from −18.0 ‰ to −14.4 ‰ and from 7.2 ‰ to 9.2 ‰, respectively. SIA data allowed for the estimation of the trophic position of devil firefish from Rhodes Island, which showed a mean value of 3.1 ± 0.6 and confirms that the species primarily relies on a benthic baseline. Further, our isotopic values approach those obtained in North Carolina and Bermuda, confirming its role as a mesopredator in the Mediterranean benthic food webs. Although preliminary, such results can provide an important baseline for future investigations on the species and the potential impact on the Mediterranean food webs.
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Open AccessArticle
The Effect of ‘Roughness’ on Upwelling North of Cape Town in Austral Summer
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Mark R. Jury
Oceans 2025, 6(4), 83; https://doi.org/10.3390/oceans6040083 - 9 Dec 2025
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Cape Town, South Africa, experiences coastal upwelling during austral summer. In this study, the effects of kinematic and thermal ‘roughness’ on wind stress are analyzed using 5–25 km resolution multi-satellite and coupled reanalysis datasets in the period 2010–2024. Average conditions for austral summer
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Cape Town, South Africa, experiences coastal upwelling during austral summer. In this study, the effects of kinematic and thermal ‘roughness’ on wind stress are analyzed using 5–25 km resolution multi-satellite and coupled reanalysis datasets in the period 2010–2024. Average conditions for austral summer (December–February) are calculated to identify east–west gradients in sensible heat flux, wave height, and equatorward winds and to assess their consequences for the drag coefficient, wind-driven Ekman transport, and entrainment over the shelf from 16.9 to 18.7° E, north of Cape Town (33.7° S). Statistical and numerical outcomes are compared for austral summer and during active coastal upwelling in January 2018 with chlorophyll concentrations > 3 mg/m3. A subtropical anticyclone generated shallow equatorward winds next to a wind shadow north of Cape Town. Sharp cross-shore gradients in momentum flux were amplified by shoreward reductions in sensible heat flux and wave height, which suppressed the drag coefficient 10-fold. The inclusion of kinematic and thermal roughness in wind stress calculations results in a higher average cyclonic curl (−2.4 × 10−6 N/m3), which translates into vertical entrainment > 3 m/day at 33.7° S, 18° E. The research links coastal upwelling leeward of a mountainous cape with cross-shore gradients in air–sea fluxes that support recirculation and phytoplankton blooms during austral summer.
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Open AccessArticle
Two New Species of Free-Living Marine Nematodes (Nematoda) from the Yellow Sea, China
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Xiaoyi Sun and Yong Huang
Oceans 2025, 6(4), 82; https://doi.org/10.3390/oceans6040082 - 3 Dec 2025
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Two new species of free-living marine nematodes were collected in the Yellow Sea, China, and they are described herein as Actinonema sinica sp. nov. and Comesoma zhangi sp. nov. Actinonema sinica sp. nov. is characterized by short cephalic setae; lateral differentiation consisting of
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Two new species of free-living marine nematodes were collected in the Yellow Sea, China, and they are described herein as Actinonema sinica sp. nov. and Comesoma zhangi sp. nov. Actinonema sinica sp. nov. is characterized by short cephalic setae; lateral differentiation consisting of a row of longitudinal sclerotized bars and beginning at the level of anterior third of the pharyngeal region; horn-shaped telamons; a curved rod-shaped gubernaculum; and an elongate conical tail with a smooth, pointed tip. Comesoma zhangi sp. nov. is characterized by long, thick cephalic setae, reaching up to 28 µm in length; a cup-shaped buccal cavity lacking a tooth and narrowing posteriorly with small projections; an amphidial fovea with two turns; slender, arcuate spicules 2.6 times the cloacal body diameter in length, lacking a proximal capitulum; a plate-like gubernaculum without apophysis; and the absence of precloacal supplements. Updated keys to the valid species of the genus Actinonema and the genus Comesoma are provided. A comparative morphological table of all currently accepted species of Comesoma is also provided.
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Open AccessArticle
Predicting Chlorophyll-a in the Mauritanian–Senegalese Coastal Upwelling from Tropical Sea Surface Temperature
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Elena Calvo-Miguélez, Belén Rodríguez-Fonseca, Víctor Galván-Fraile and Iñigo Gómara
Oceans 2025, 6(4), 81; https://doi.org/10.3390/oceans6040081 - 1 Dec 2025
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The Mauritanian–Senegalese Coastal Upwelling exhibits strong interannual variability, which has been found to be driven by El Niño-Southern Oscillation (ENSO). In addition, ENSO has been shown to be triggered by the Indian Ocean and Atlantic Sea Surface Temperature (SST) variability. Nevertheless, how all
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The Mauritanian–Senegalese Coastal Upwelling exhibits strong interannual variability, which has been found to be driven by El Niño-Southern Oscillation (ENSO). In addition, ENSO has been shown to be triggered by the Indian Ocean and Atlantic Sea Surface Temperature (SST) variability. Nevertheless, how all these basins impact on the upwelling predictability has not been analyzed so far. Using a satellite product of surface chlorophyll-a as a proxy of marine productivity, this work makes an assessment of the predictability of the Mauritanian–Senegalese Coastal Upwelling marine ecosystem. Different statistical approaches are used to evaluate the relative contribution of the tropical basins, including the Pacific, Indian, equatorial and Tropical North Atlantic SSTs. The results indicate that although most of the upwelling variability stands for ENSO, the Atlantic contributions play an important role in shaping the seasonal prediction skill. These results may have strong implications for fisheries and marine ecosystem management in the region.
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Open AccessArticle
Persistent Geographic Patterns of Coral Recruitment in Hawaiʻi
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Gregory P. Asner, Rachel R. Carlson, Caleb Labo, Dominica E. Harrison and Roberta E. Martin
Oceans 2025, 6(4), 80; https://doi.org/10.3390/oceans6040080 - 1 Dec 2025
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Coral life cycle dynamics are poorly understood in most reefs, especially at the large geographic scales commensurate with ocean transport, genetic flow, and other synoptic scale processes. We present a spatially explicit, large-scale, and multi-temporal study of coral settlement along a 30 km
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Coral life cycle dynamics are poorly understood in most reefs, especially at the large geographic scales commensurate with ocean transport, genetic flow, and other synoptic scale processes. We present a spatially explicit, large-scale, and multi-temporal study of coral settlement along a 30 km long reef system in the Southwest portion of Hawaiʻi Island. Here, we focused on interannual variability in coral recruitment from 2021 to 2024, a period without a major marine heatwave. We used stratified random site selection to place 320 coral settlement tiles at 32 sites (10 tiles per site) at 10 ± 3 m water depth annually to monitor recruitment of the three most common coral genera found in the region (Montipora, Pocillopora, Porites). Site-level interannual variability in coral recruitment was high yet the overall geographic distribution of recruits was consistent through time. This occurred despite a decrease in benthic temperature and recruitment rates during the study period. Persistent geographic patterns in coral recruitment strengthen our understanding of mechanisms and conditions that drive reef resilience. They also strongly suggest a need to protect areas of high recruitment while studying drivers of low recruitment in contrasting habitats. This approach will further increase support of coral production in an era of climate- and coastal pollution-driven declines in coral reefs.
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Open AccessArticle
Role of Salinity on Phosphorous Removal by Chaetoceros muelleri
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Glacio S. Araújo, Clarice S. Santigado, Lucas C. B. Silva, João Cotas and Leonel Pereira
Oceans 2025, 6(4), 79; https://doi.org/10.3390/oceans6040079 - 18 Nov 2025
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The present work aims to verify the growth (estimated with optical density) of the dry biomass after proper flocculation and weighing, and removal of phosphorus by the microalga Chaetoceros muelleri (Mediophyceae), at six different salinities. Cultivations were carried out with constant volume, for
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The present work aims to verify the growth (estimated with optical density) of the dry biomass after proper flocculation and weighing, and removal of phosphorus by the microalga Chaetoceros muelleri (Mediophyceae), at six different salinities. Cultivations were carried out with constant volume, for a period of eight days, consisting of six treatments with three repetitions each, at different salinities (30, 25, 20, 15, 10, and 5) (seawater = 34). We observed that the best results were obtained when the microalgae were grown at salinity 30, that is, we observed better performances for this microalga at higher salinities. At this same salinity, the microalgae presented the best results of phosphorus removal (46.08 ± 0.67%). Regarding biomass recovery by microalgae, after drying the flocculate, the best result was obtained at salinity 25, with a final value of 3.47 ± 0.04 g dry mass L−1. Therefore C. muelleri is a promising solution for increasing demand by the blue economy with the associated circular economy, promoting rehabilitation of ecological sites with economic output. Thus, this work aims to evaluate the effect of salinity on phosphorus removal using C. muelleri.
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Open AccessArticle
Dolphins ‘Orient-Against-Current’: Foraging in Dredged Channels
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Eliza M. M. Mills, Sarah Piwetz and Dara N. Orbach
Oceans 2025, 6(4), 78; https://doi.org/10.3390/oceans6040078 - 14 Nov 2025
Abstract
Bottlenose dolphins (Tursiops sp.) are opportunistic foragers with global distributions that utilize diverse feeding tactics based on environmental factors, habitat features, prey behavior, group dynamics, and genetics. We describe a unique foraging tactic regularly observed in the confluence of dredged shipping channels
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Bottlenose dolphins (Tursiops sp.) are opportunistic foragers with global distributions that utilize diverse feeding tactics based on environmental factors, habitat features, prey behavior, group dynamics, and genetics. We describe a unique foraging tactic regularly observed in the confluence of dredged shipping channels with high anthropogenic disturbance, and explore potential abiotic (temporal, tidal, habitat) drivers of the behavior. A shore-based digital theodolite was used from 2021 to 2022 to observe common bottlenose dolphins (T. truncatus) foraging within a current in a technique we term Orient-Against-Current (OAC). During OAC, dolphins position themselves facing into the flow of a current, swimming at a speed to maintain a stationary position within the current, and feed while prey move with the current towards them. Orient-Against-Current occurred in all seasons and throughout daylight hours, particularly during the winter and spring. Dolphins engaged in OAC during ebb tides and intermediate current speeds (1–2 knots), but not during slack tides. As OAC occurred closer to shoreline structures (i.e., seawalls, concrete blocks) than to mangroves and natural seagrass beds, it appears that hard human-engineered structures aid in prey capture during OAC. Knowledge of dolphin foraging techniques can aid in understanding behavioral plasticity shaped by anthropogenically altered environments in industrialized coastal areas.
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(This article belongs to the Special Issue Marine Mammals in a Changing World, 3rd Edition)
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Open AccessArticle
Role of Lee Wave Turbulence in the Dispersion of Sediment Plumes
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Alban Souche, Ebbe H. Hartz, Lars H. Rüpke and Daniel W. Schmid
Oceans 2025, 6(4), 77; https://doi.org/10.3390/oceans6040077 - 12 Nov 2025
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Sediment plumes threatening benthic ecosystems are one of the environmental hazards associated with seafloor interventions such as bottom trawling, cabling, dredging, and marine mining operations. This study focuses on sediment plume release from hypothetical future deep-sea mining activities, emphasizing its interaction with turbulent
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Sediment plumes threatening benthic ecosystems are one of the environmental hazards associated with seafloor interventions such as bottom trawling, cabling, dredging, and marine mining operations. This study focuses on sediment plume release from hypothetical future deep-sea mining activities, emphasizing its interaction with turbulent ocean currents in regions characterized by complex seafloor topography. In such environments, turbulent lee waves may significantly enhance the scattering of released sediments, pointing to the clear need for appropriate impact assessment frameworks. Global-scale models are limited in their ability to resolve sufficiently high Reynolds numbers to accurately represent turbulence generated by seafloor topography. To overcome these limitations and effectively assess lee wave dynamics, models must incorporate the full physics of turbulence without simplifying the Navier–Stokes equations and must operate with significantly finer spatial discretization while maintaining a domain large enough to capture the full topographic signal. Considering a seamount in the Lofoten Basin of the Norwegian Sea as an example, we present a novel numerical analysis that explores the interplay between lee wave turbulence and sediment plume dispersion using a high-resolution Large Eddy Simulation (LES) framework. We show that the turbulence occurs within semi-horizontal channels that emerge beyond the topographic highs and extend into sheet-like tails close to the seafloor. In scenarios simulating sediment release from various sites on the seamount, our model predicts distinct behavior patterns for different particle sizes. Particles with larger settling velocities tend to deposit onto the seafloor within 50–200 m of release sites. Conversely, particles with lower settling velocities are more susceptible to turbulent transport, potentially traveling greater distances while experiencing faster dilution. Based on our scenarios, we estimate that the plume concentration may dilute below 1 ppm at about 2 km distance from the release site. Although our analysis shows that mixing with ambient seawater results in rapid dilution to low concentrations, it appears crucial to account for the effects of topographic lee wave turbulence in impact assessments related to man-made sediment plumes. Our high-resolution numerical simulations enable the identification of sediment particle size groups that are most likely affected by turbulence, providing valuable insights for developing targeted mitigation strategies.
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Open AccessArticle
Chaetognaths (Chaetognatha: Sagittoidea) at the Boundary of the Pacific Ocean and the Gulf of California: Their Relationship with the Summer Circulation Pattern
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Mitzi Paulina de La Rosa-Bernal, Elizabeth Durán-Campos, María Adela Monreal-Gómez, Erik Coria-Monter, David Alberto Salas-de-León and Sergio Cházaro-Olvera
Oceans 2025, 6(4), 76; https://doi.org/10.3390/oceans6040076 - 12 Nov 2025
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Chaetognaths play an essential role in zooplankton communities and significantly contribute to their overall biomass. Changes in the hydrographic properties of the water column, driven by hydrodynamic processes, affect their species richness and abundance. This study investigates the species richness and abundance of
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Chaetognaths play an essential role in zooplankton communities and significantly contribute to their overall biomass. Changes in the hydrographic properties of the water column, driven by hydrodynamic processes, affect their species richness and abundance. This study investigates the species richness and abundance of chaetognaths, as well as their relationship with circulation patterns at the boundary of the Pacific Ocean and the Gulf of California, Mexico. The analysis is based on high-resolution hydrographic data and zooplankton samples collected during the early summer of 2019. The results revealed a cyclonic circulation pattern that impacted the chaetognath community at depths greater than 200 m. This pattern resulted in higher chaetognath densities along the peninsular coast compared to the mainland coast. A total of 15 species from three different families were identified. Among these, Flaccisagitta enflata had the highest density, recorded at 16,143 ind 100 m−3, while Aidanosagitta neglecta exhibited a significantly lower density of only 48 ind 100 m−3. Multivariate statistical analyses indicated that hydrographic variables were key factors influencing the distribution of the chaetognath community during the sampling period. Given the significant research gap regarding this group in the region, our findings contribute to a deeper understanding of chaetognath communities and their relationship with circulation patterns in the Southern Gulf of California, recognized as an oasis of marine life.
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Open AccessArticle
The Large-Scale Geostrophic Circulation Around Cuba: Insights from Altimeter Data
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Roberto Iacono, Massimiliano Palma, Ernesto Napolitano and Alain Muñoz Caravaca
Oceans 2025, 6(4), 75; https://doi.org/10.3390/oceans6040075 - 11 Nov 2025
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Due to the scarcity of in situ observations, the current description of the circulation around Cuba is far from complete. For example, the structure and variability of the flow through the Windward Passage, which hosts a significant fraction of the transport from the
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Due to the scarcity of in situ observations, the current description of the circulation around Cuba is far from complete. For example, the structure and variability of the flow through the Windward Passage, which hosts a significant fraction of the transport from the Atlantic to the Caribbean Sea, are still unclear. In this study, we use a recent, high-resolution Copernicus product based on satellite altimeter observations to obtain new insights into the large-scale geostrophic circulation around the eastern and southern coasts of Cuba. Among other results, we uncover a robust seasonal variability of the circulation around the Windward Passage, related to the presence of a cyclone to the south of the passage. Through most of the year the cyclone, with a companion anticyclone to the west, hinders the Atlantic inflow, but in autumn a strong stream crosses the western side of the passage and deeply penetrates the northern Caribbean Sea. The last part of the work deals with the time variability of the sea level in the Caribbean. We find that an apparent change in trend advocated in the recent literature has been reabsorbed in the last decade, yielding a local average sea level trend over the last thirty years in line with that for the global ocean.
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Open AccessArticle
A Bayesian Model Based on the Bow-Tie Causal Framework (BT-BN) for Maritime Accident Risk Analysis: A Case Study of the Bohai Sea
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Junmei Ou, Shuangxin Wang, Chuanhao Sun, Wenyu Zhao and Chenglong Jiang
Oceans 2025, 6(4), 74; https://doi.org/10.3390/oceans6040074 - 7 Nov 2025
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Maritime accidents are low-probability, high-consequence events, making mechanism analysis crucial for risk mitigation. Existing studies often focus on single scenarios or factors and frequently mix pre-incident observational data with subjective unsafe behavior labels, limiting causal-chain construction for proactive risk prediction. To address these
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Maritime accidents are low-probability, high-consequence events, making mechanism analysis crucial for risk mitigation. Existing studies often focus on single scenarios or factors and frequently mix pre-incident observational data with subjective unsafe behavior labels, limiting causal-chain construction for proactive risk prediction. To address these issues, this study proposes a Bow-Tie-based causal-chain Bayesian network, establishing a hierarchical inference chain of “observed parameters–unsafe causes–accident types” to capture causal interactions among multiple factor categories and enable inference from pre-incident data to potential unsafe causes and accident types. Applied to the Bohai Sea region, sensitivity analysis quantified the effects of risk factors under varying conditions on collision, sinking, and grounding probabilities. The results show that the method can infer accident types and unsafe causes using only pre-incident data, achieving over 70% accuracy and closely matching accident investigation findings. Moreover, it reveals layer-by-layer mechanisms of key contributing factors and provides targeted management interventions, supporting quantitative decision-making for maritime regulators and shipping companies, with significant practical applicability.
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Open AccessArticle
Tidal-Phase Discharge Strategy Significantly Enhances Sewage Dilution Trapped in Deep Tidal Passages
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Qinsi Chen, Yingyu Tan, Song Hu, Xiaohua Wang, Heng Zhao, Pengxia Liu and Xing Liu
Oceans 2025, 6(4), 73; https://doi.org/10.3390/oceans6040073 - 6 Nov 2025
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Tidal dynamics substantially govern nearshore circulation patterns. The discharge of sewage at different tidal stages may have a significant impact on the dilution of pollutants. However, discussions on tidal phase sewage discharge strategy are still rare. This study focuses on the narrow tidal
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Tidal dynamics substantially govern nearshore circulation patterns. The discharge of sewage at different tidal stages may have a significant impact on the dilution of pollutants. However, discussions on tidal phase sewage discharge strategy are still rare. This study focuses on the narrow tidal passage in the Ningbo-Zhoushan sea area, which receives a large amount of coastal wastewater, but the role of the unique hydrodynamic processes in the dilution of pollutants in this region remains unclear. By using a combination of on-site measurements and the FVCOM-dye simulation method, the scenario of high-concentration sewage retention in the tidal passage was demonstrated. The coastal residual circulation formed by strong tidal currents confined over 78% of the tracers within a 3 km range near the shore, and a subsurface dye accumulation zone emerged along the 25–50 m isobaths. Monsoon transitions regulated pollution plumes, inducing 5–8% seasonal variability in pollution footprints controlled by wind-tide-stratification interplay. The tidal phase discharge strategy was revealed to be highly effective in this study; both submerged discharge in deep-water zones and intermittent discharge strategies implemented in shallow-water zones significantly reduce the spatial coverage of high-concentration sewage plumes. Our findings highlight the importance of formulating discharge strategies based on tidal phases in typical narrow and deep tidal passages.
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(This article belongs to the Topic Anthropogenic Impacts in Marine Coastal Waters: Assessment, Case Studies and Solutions)
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Open AccessFeature PaperArticle
Low Genetic Diversity and Decreased Effective Population Sizes of Acropora hyacinthus Populations Inhabiting Inshore and Offshore Reefs in the South China Sea
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Yijin Di, Lingyu Zheng, Jingzhao Ke, Yinyin Zhou, Shaoyang Mo, Xiangbo Liu, Jiquan Lin, Yuxiao Ren, Duanjie Huang, Rouwen Chen and Xiubao Li
Oceans 2025, 6(4), 72; https://doi.org/10.3390/oceans6040072 - 4 Nov 2025
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Coral reefs, with their high biodiversity and ecological service functions, face significant threats due to climate change, overfishing, and pollution. The South China Sea (SCS) hosts rich coral biodiversity, particularly Acropora hyacinthus, a critical species for reef restoration. However, the region’s coral
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Coral reefs, with their high biodiversity and ecological service functions, face significant threats due to climate change, overfishing, and pollution. The South China Sea (SCS) hosts rich coral biodiversity, particularly Acropora hyacinthus, a critical species for reef restoration. However, the region’s coral reefs are increasingly degraded, highlighting the urgent need for conservation efforts. In the present study, the genetic diversity and population structure of A. hyacinthus were examined based on two types of data: double-digest restriction-site-associated DNA (ddRAD) sequencing data and mitochondrial putative control region DNA (mtCR) sequences. Coral tissue samples were collected from 74 colonies inhabiting two inshore reefs (Sanya) and three offshore reefs (Xisha islands), and 748 single nucleotide polymorphisms (SNPs) and 74 mtCR sequences were obtained and utilized for downstream analysis. The results were consistent in analyses and did not cluster into two geographical groups for the inshore and offshore sites. Phylogenetic analysis showed that individuals of A. hyacinthus inhabiting the five detected sites were likely cryptic species HyaD. Furthermore, AMOVA and pairwise FST estimations based on both data types revealed no differentiation among five populations and between inshore and offshore reefs, which could be due to the reproductive mode of broadcast spawning for this species. However, a prevalent low level of genetic diversity was observed when compared with nearby Taiwan regions and Japan, and the geographic history results showed that the effective population size (Ne) had been decreasing for the past 300 years. Thus, we speculated that the populations of A. hyacinthus inhabiting the SCS lack the potential to cope with future climate change adequately, and multiple conservation measures should be implemented based on considering genetic diversity.
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Open AccessReview
Systematic Analysis of Threats to Sea Turtles in Mexico: Trends, Knowledge Gaps, and Implications for Conservation
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Ruth I. Ramírez-Villanueva, Fernando Gumeta-Gómez and Gustavo Hinojosa-Arango
Oceans 2025, 6(4), 71; https://doi.org/10.3390/oceans6040071 - 4 Nov 2025
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Current scientific knowledge about the threats jeopardizing the recovery of sea turtle populations in Mexico is essential for improving conservation strategies. This study presents the results of a systematic review of the scientific literature published between 1960 and 2024, with the aim of
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Current scientific knowledge about the threats jeopardizing the recovery of sea turtle populations in Mexico is essential for improving conservation strategies. This study presents the results of a systematic review of the scientific literature published between 1960 and 2024, with the aim of identifying the main threats contributing to the decline of sea turtle populations in Mexico, detecting trends in scientific production, identifying knowledge gaps, and offering a comprehensive view of the challenges and priority actions needed to improve conservation strategies by region in Mexico. The review revealed a significant increase in research since 1997, with a predominant focus on pollution, fishing, and disease, mainly in the Pacific region. While Chelonia mydas and Lepidochelys olivacea were the most studied species, Dermochelys coriacea and Lepidochelys kempii received less attention. A total of 22 stressors associated with 8 threats were identified, but knowledge gaps persist regarding emerging threats such as climate change, coastal and marine development, and marine noise pollution. The results underscore the need to expand research on less-studied species and regions, strengthen studies in marine ecosystems, and improve the alignment between research and conservation policies to ensure the long-term viability of sea turtles in Mexico.
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Open AccessArticle
Combining Adequate BRUV Deployment Times with Individual Photo-Identification Improves Monitoring of Shark Populations in the Caribbean
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Johanna Kohler, Mauvis Gore, Rupert Ormond, Katherine Mason, Anne Veeder and Timothy Austin
Oceans 2025, 6(4), 70; https://doi.org/10.3390/oceans6040070 - 22 Oct 2025
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Sharks play a key role in coral reef ecosystems, but Caribbean populations are concerningly low. When monitoring endangered species, it is critical to use minimally invasive tools and protocols that are adequate for local species and the environment. This study investigated the adequate
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Sharks play a key role in coral reef ecosystems, but Caribbean populations are concerningly low. When monitoring endangered species, it is critical to use minimally invasive tools and protocols that are adequate for local species and the environment. This study investigated the adequate deployment time of baited remote underwater videos (BRUVs) for shark studies in the Cayman Islands and whether the use of photo-identification to recognise individuals (MaxIND) on BRUVs could improve abundance estimates (in comparison to MaxN) and the analysis of shark behaviour. From 2015 to 2018, a total of 557 BRUVs were deployed with recording times ranging from 3.8 to 211.03 min. The results showed that (1) of the total number of individual sharks recorded on videos, 95% of individuals were recorded within the first 110 min (slight variations between species), (2) MaxIND values were 1.1–1.5 times greater than that of MaxN (ratios varying with species) and (3) time of first arrival (Tarrive) was similar for all recorded species but time spent in front of the camera’s field of view (Tvisit) and activity levels (count of entries in camera’s field of view) varied between species. The results provide key information to improve the localised monitoring of rare/endangered species and can inform conservation management.
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Open AccessArticle
Decadal Trends in Buoyancy, Internal Modes and Horizontal Dynamics in the Northern Ionian Sea
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Gian Luca Eusebi Borzelli, Ernesto Napolitano, Roberto Iacono and Maria Vittoria Struglia
Oceans 2025, 6(4), 69; https://doi.org/10.3390/oceans6040069 - 18 Oct 2025
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The Ionian Sea plays a crucial role as a crossroads for various Mediterranean water masses, making it a significant factor in the seawater budgets, biogeochemistry, and biodiversity of the subbasins of the Mediterranean Sea. In recent years, numerous theories have been proposed in
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The Ionian Sea plays a crucial role as a crossroads for various Mediterranean water masses, making it a significant factor in the seawater budgets, biogeochemistry, and biodiversity of the subbasins of the Mediterranean Sea. In recent years, numerous theories have been proposed in an effort to better understand the complex hydrography and dynamics of the Ionian. These theories primarily focus on the variability of the basin’s near-surface circulation, which is characterized by a recurring reversal that occurs over a period of 10–13 years. This variability is often attributed to internal processes and/or boundary forcing, as waters of Atlantic origin enter the basin from its western boundary. In this study, we utilize temperature–salinity profiles and absolute dynamic topography data provided by the Copernicus database to examine long-term changes in the vertical structure of the basin and their relationships with changes in the horizontal near-surface circulation. Our findings show that the vertical dependency of the density field of the basin undergoes significant fluctuations over interannual and decadal time scales, which induce important buoyancy changes throughout the water column and determine changes in the structure of the first baroclinic mode. However, no changes in the basin-averaged hydrographic structure can be related to the near-surface current reversals. These reversals are mainly associated with deformations of the main isopycnal surface, intended as the region of maximum buoyancy over the water column, suggesting that they do not impact the hydrographic properties of the various Ionian water masses. Instead, they alter their routes and relative volumes within different parts of the basin.
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Open AccessArticle
Effects of Elevated Temperatures and Nutrient Enrichment on Microbial Communities Associated with Turf Algae Under Laboratory Culture
by
Jatdilok Titioatchasai, Anuchit Darakrai, Sinjai Phetcharat and Jaruwan Mayakun
Oceans 2025, 6(4), 68; https://doi.org/10.3390/oceans6040068 - 17 Oct 2025
Cited by 1
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Increased seawater temperatures and nutrient loading are stressors that affect coral reefs and their microbiomes. In this study, filamentous algae were collected and exposed to different temperatures and nutrient concentrations through a laboratory experiment. Microbial DNA was extracted and analyzed using amplicon sequencing
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Increased seawater temperatures and nutrient loading are stressors that affect coral reefs and their microbiomes. In this study, filamentous algae were collected and exposed to different temperatures and nutrient concentrations through a laboratory experiment. Microbial DNA was extracted and analyzed using amplicon sequencing of the V3-V4 hypervariable region of the 16S rRNA gene. In total, 1 domain, 51 phyla, 131 classes, 335 orders, 549 families, and 1905 species were identified. Proteobacteria and Bacteroidota were the dominant taxa reported. Elevated seawater temperatures and nutrient enrichment impacted microbial communities associated with turf algae under laboratory culture. Bacterial species diversity and abundance differed under different temperature and nutrient conditions. Proteobacteria and Actinobacteria were abundant in lower-temperature conditions, while Desulfobacterota, Spirochaetota, and Firmicutes were abundant in higher-temperature conditions. Ruegeria was abundant in low-temperature conditions, whereas Vibrio abundance was low. Regarding nutrient conditions, Proteobacteria and Cyanobacteria were abundant under high-nutrient conditions, while Firmicutes and Desulfobacterota were abundant under ambient-nutrient conditions. The higher nutrient concentration increased the abundance of pathogenic bacteria, such as Vibrio and Photobacterium, while Pseudoalteromonas, which is beneficial for reefs, was present under ambient nutrient conditions. This study demonstrates that temperature and nutrient enrichment can shape microbial communities under laboratory conditions, providing an experimental setting for further studies of bacterial functions and metabolic processes in natural conditions under thermal and nutrient stresses.
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Open AccessArticle
Interactions Between Tourism Vessels and Humpback Whales in the Gulf of Tribugá, Colombia
by
Laura Valentina Girón-Castaño, Ann Carole Vallejo, Isabel C. Avila and Alan Giraldo
Oceans 2025, 6(4), 67; https://doi.org/10.3390/oceans6040067 - 13 Oct 2025
Abstract
Whale-watching is a growing ecotourism activity in Colombia that offers economic benefits but may pose behavioral risks to humpback whales (Megaptera novaeangliae) if not properly managed. Although preventive recommendations exist to promote sustainable practices, their effectiveness remains largely unquantified in the
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Whale-watching is a growing ecotourism activity in Colombia that offers economic benefits but may pose behavioral risks to humpback whales (Megaptera novaeangliae) if not properly managed. Although preventive recommendations exist to promote sustainable practices, their effectiveness remains largely unquantified in the Colombian North Pacific. This study evaluates adherence to whale-watching regulations and describes humpback whale behavioral responses to vessel presence in the Gulf of Tribugá, a key breeding and calving area. Data were collected from tourism vessels during July and September 2023, documenting 236 whales across 99 groups—71% of which included calves. The predominant whale response to vessels was neutral (74%), while evasive behaviors occurred in 22% of encounters, particularly among mother–calf pairs. Surface-active behavior was infrequent (22%) and most observed in calf–escort groups, serving as a supplementary indicator of behavioral state. Compliance with whale-watching recommendations varied: although most encounters involved a single vessel (57%) and averaged 16 min in duration, only 14% of vessels maintained the recommended minimum distance of 100 m. These findings highlight persistent gaps in regulatory adherence and underscore the need for strengthened enforcement and adaptive management to ensure sustainable whale-watching practices in Colombia’s North Pacific.
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(This article belongs to the Special Issue Marine Mammals in a Changing World, 2nd Edition)
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Open AccessArticle
Winter Bloom Dynamics and Molecular Analysis of Benthic Sediments for the Toxic Dinoflagellate, Dinophysis acuminata, at Torquay Canal, Rehoboth Bay, Delaware, USA
by
Amanda Kathryn Pappas, Tahera Attarwala and Gulnihal Ozbay
Oceans 2025, 6(4), 66; https://doi.org/10.3390/oceans6040066 - 10 Oct 2025
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The increased presence of harmful algal blooms (HABs) is a concern for many aquatic environments, especially with the increasing effects of climate change. Members of the dinoflagellate genus Dinophysis have been shown to produce toxins that can cause Diarrheic Shellfish Poisoning (DSP) in
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The increased presence of harmful algal blooms (HABs) is a concern for many aquatic environments, especially with the increasing effects of climate change. Members of the dinoflagellate genus Dinophysis have been shown to produce toxins that can cause Diarrheic Shellfish Poisoning (DSP) in humans who consume infected shellfish. The advancing oyster aquaculture industry in Delaware will require the development of management practices and monitoring HAB species to protect environmental and human health. Temperature, nutrients, and prey abundance can be drivers of Dinophysis blooms. D. acuminata has been historically identified at high concentrations (>200,000 cells L−1) in water samples from Rehoboth Bay, DE, USA. However, the reach of spring blooms and how far they extend to aquaculture sites have not been determined. This study monitored an emergent HABs threat of a toxin-producing dinoflagellate, Dinophysis acuminata, by assessing a transect during the first recorded winter bloom in Torquay Canal and analyzing concentrations of chemical nutrients of combined nitrate and nitrite, and orthophosphate. Pearson correlation coefficient analysis between cell density (cells L−1) and environmental variables across all sites was conducted to determine significant relationships between water temperature, Chl-a concentration, conductivity, dissolved oxygen (DO), combined nitrate and nitrite concentrations (NOx), and orthophosphate concentrations (PO43−). Genetic techniques and PCR were utilized to determine the presence of Dinophysis using genus-specific primers to monitor cell density or abundance within the sediments during winter months. There were no significant correlations between environmental variables, and nutrient concentrations did not exceed EPA regulations. Molecular analyses of benthic sediments detected Dinophysis spp., offering insight into potential bloom origins. Overall, there is limited ecological data on Dinophysis acuminata in Rehoboth Bay, DE, USA. The results of this study will help strengthen resources for monitoring HAB species and understanding potential risks to oyster aquaculture in Delaware.
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