Journal Description
Journal of Fungi
Journal of Fungi
is an international, peer-reviewed, open access journal of mycology published monthly online by MDPI. The Medical Mycological Society of the Americas (MMSA) and the Spanish Phytopathological Society (SEF) are affiliated with the Journal of Fungi, and their members receive a discount on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, PMC, CAPlus / SciFinder, AGRIS, and other databases.
- Journal Rank: JCR - Q1 (Mycology) / CiteScore - Q1 (Ecology, Evolution, Behavior and Systematics)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 18.2 days after submission; acceptance to publication is undertaken in 2.8 days (median values for papers published in this journal in the first half of 2025).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
Impact Factor:
4.0 (2024);
5-Year Impact Factor:
4.5 (2024)
Latest Articles
Effect of Inoculation with Arbuscular Mycorrhizal Fungi (Rhizophagus irregularis BGC AH01) on the Soil Bacterial Community Assembly
J. Fungi 2025, 11(10), 739; https://doi.org/10.3390/jof11100739 (registering DOI) - 15 Oct 2025
Abstract
Soil bacterial communities are crucial drivers of nutrient cycling and ecosystem functioning; however, their temporal dynamics under arbuscular mycorrhizal (AM) fungi colonization remain insufficiently characterized. In this study, we used a non-destructive continuous sampling method and undertook a 90-day pot experiment to examine
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Soil bacterial communities are crucial drivers of nutrient cycling and ecosystem functioning; however, their temporal dynamics under arbuscular mycorrhizal (AM) fungi colonization remain insufficiently characterized. In this study, we used a non-destructive continuous sampling method and undertook a 90-day pot experiment to examine the process of shaping the bacterial community of hyphosphere soil. Following inoculation with AM fungi, we found an increase in the α-diversity index of the hyphosphere bacterial community. The community diversity and richness and the key bacterial taxa in the hyphosphere both gradually increased from 30 to 60 days and stabilized thereafter. Principal coordinated (PCoA) analysis and network analysis further confirmed these findings. Stabilized by 60 days post-inoculation, with deterministic processes dominating assembly in inoculated AM fungi soils, while stochastic processes prevailed in non-inoculated controls. Inoculation strengthened bacterial associations with available phosphorus, while making the key bacterial communities more responsive to multiple soil physicochemical properties (available P, CEC, N, and TOC). These findings provide critical insights into AM fungi mediation of soil microbiome dynamics, with the identified 60-day stabilization period offering a key temporal framework for understanding tripartite soil–AM fungi-bacteria interactions.
Full article
(This article belongs to the Section Environmental and Ecological Interactions of Fungi)
Open AccessReview
Edible Fungi Melanin: Recent Advances in Extraction, Characterization, Biological Activity and Applications
by
Jiandong Tang, Hebin Shen, Wenyu Lv, Jingxuan Zhang and Junsheng Fu
J. Fungi 2025, 11(10), 738; https://doi.org/10.3390/jof11100738 - 14 Oct 2025
Abstract
Natural melanin biopolymers exhibit a variety of biological activities, but their commercial development is constrained by numerous factors, including high costs, unsustainable sources, the use of harmful solvents during extraction, and low extraction efficiency. Notably, existing research indicates that synthetic melanin differs from
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Natural melanin biopolymers exhibit a variety of biological activities, but their commercial development is constrained by numerous factors, including high costs, unsustainable sources, the use of harmful solvents during extraction, and low extraction efficiency. Notably, existing research indicates that synthetic melanin differs from natural melanin in nature, and this difference may directly impact its application efficacy. Additionally, the extraction process itself is highly challenging, primarily due to the diversity and complexity of melanin biopolymer structures. The melanin produced by edible fungi primarily belongs to the eumelanin category. Given its outstanding sustainability and accessibility, it is regarded as an ideal raw material for industrial production. To deepen our understanding of edible fungus-derived melanin and promote its effective application across various fields, a comprehensive review of research on melanin isolated from edible fungi is urgently needed. Such a review will help researchers from different disciplinary backgrounds recognize the importance of edible fungus melanin and provide reference information for their research planning. With this objective in mind, this report reviews the latest research progress in recent years regarding extraction methods, structural characterization, biological activity, and application areas of edible fungus-derived melanin. Additionally, the report explores key characteristic parameters for distinguishing different types of melanin and emphasizes the importance of deepening our understanding of the biosynthetic mechanisms of edible mushroom melanin, aiming to lay the foundation for its efficient production and application in the future.
Full article
(This article belongs to the Special Issue Research Progress on Edible Fungi)
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Open AccessArticle
Comparative Symbiotic Effects of Mycorrhizal Fungal Strains from Different Hosts on Seed Germination and Seedling Growth in Dendrobium officinale
by
Jian-Yu He, Xiao-Yan Xie, Zhuo-Qi Liang, Jian-Xia Zhang, Shu Liu and Xiao-Lan Zhao
J. Fungi 2025, 11(10), 737; https://doi.org/10.3390/jof11100737 - 14 Oct 2025
Abstract
Compatible fungal partners of orchids can significantly enhance seed germination and increase seedling establishment under both in vitro and in situ conditions. This study isolated 14 Tulasnella isolates from five-year-old potted plants of three D. officinale cultivars. Three phylogenetically representative strains (Dca122, Dca222,
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Compatible fungal partners of orchids can significantly enhance seed germination and increase seedling establishment under both in vitro and in situ conditions. This study isolated 14 Tulasnella isolates from five-year-old potted plants of three D. officinale cultivars. Three phylogenetically representative strains (Dca122, Dca222, and Dca113) and two additional orchid mycorrhizal fungus (OMFs, ML01 and Pi) were selected to evaluate their effects on D. officinale seed germination and seedling development in vitro, and subsequent seedling growth under greenhouse conditions. All five OMFs supported seed germination and seedling development in vitro. Notably, Dca113, Pi, and ML01 exhibited the most pronounced effects, producing protocorms 3–4 times larger in volume than controls. By day 25, 37.54%, 37.34%, and 42.6% of protocorms developed cotyledons with these isolates, respectively. Furthermore, after 120 days, ML01 and Dca113 treatments yielded 35.6% and 30.68% autotrophic seedlings with fully differentiated roots. Under greenhouse, ML01, Pi, and Dca122 significantly enhanced fresh weight accumulation, plant height, and stem node number in potted seedlings. In contrast, Dca222 primarily stimulated sprouting tillers and adventitious root formation. Our results demonstrate that the mycorrhizal effectiveness of OMFs from different hosts varies significantly in D. officinale. ML01 and Dca113 are ideal candidates for reintroduction programs due to their strong promotion of seed germination and rapid formation of rooted seedlings. ML01 proved the most effective OMF for enhancing growth in potted seedlings, while Dca222 demonstrated potential for co-inoculation strategies.
Full article
(This article belongs to the Section Fungi in Agriculture and Biotechnology)
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Open AccessArticle
AoMbp1 Governs Conidiation and Trap Morphogenesis in Arthrobotrys oligospora Via Direct Transcriptional Activation of the MAPK Sensor AoSho1
by
Ruobing Li, Lixiang Wei, Yanseng Sun, Chengzhi Zhang, Yuhang Nie, Qinglong Meng, Shuang Chen, Ming Wu, Xuepeng Cai, Jie Li, Qingling Meng and Jun Qiao
J. Fungi 2025, 11(10), 736; https://doi.org/10.3390/jof11100736 - 13 Oct 2025
Abstract
The nematode-trapping fungus (NTF) Arthrobotrys oligospora (A. oligospora) is a promising biocontrol agent, but the transcriptional regulators governing its predation remain poorly understood. Here, we demonstrated that the APSES transcription factor AoMbp1 is a master regulator of its development and stress
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The nematode-trapping fungus (NTF) Arthrobotrys oligospora (A. oligospora) is a promising biocontrol agent, but the transcriptional regulators governing its predation remain poorly understood. Here, we demonstrated that the APSES transcription factor AoMbp1 is a master regulator of its development and stress adaptation. Deletion of AoMbp1 severely impaired mycelial growth, conidiation, trap formation, and tolerance to oxidative and osmotic stresses. Transcriptome analysis revealed that these defects were associated with the widespread downregulation of genes, including those within the MAPK signaling pathway. Crucially, we showed that AoMbp1 directly binds to the promoter of AoSho1, a key upstream sensor of the MAPK cascade, and activates its expression. This finding establishes a direct AoMbp1-AoSho1 regulatory axis controlling trap morphogenesis and environmental adaptation. Our study provides novel mechanistic insights into the regulation of nematode trapping and identifies a potential target for enhancing the efficacy of A. oligospora as a biocontrol agent.
Full article
(This article belongs to the Special Issue Stress Research in Filamentous Fungi and Yeasts)
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Open AccessSystematic Review
Candida krusei Empyema: A Lung Transplant Case and Systematic Review of the Literature
by
Shifa Karatela, Sangeeta Nair-Collins, Gabriel Godart, Mary Ann Peacock, Kelly Larimore, Kristin Cuthbert, Bala Munipalli, Rohit Chitale, Ravi Durvasula and Justin Oring
J. Fungi 2025, 11(10), 735; https://doi.org/10.3390/jof11100735 - 13 Oct 2025
Abstract
Candida krusei empyema is a rare but serious manifestation of invasive candidiasis, characterized by intrinsic resistance to fluconazole, biofilm formation, and high mortality, with limited case-level data to inform management. This review aims to systematically identify and synthesize all reported English-language cases of
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Candida krusei empyema is a rare but serious manifestation of invasive candidiasis, characterized by intrinsic resistance to fluconazole, biofilm formation, and high mortality, with limited case-level data to inform management. This review aims to systematically identify and synthesize all reported English-language cases of Candida krusei empyema from January 2005 to June 2025 using PubMed, ScienceDirect, OVID MEDLINE, and Gale OneFile and perform descriptive analysis on them. Screening, data extraction, and eligibility assessment were performed, and those articles not clearly meeting eligibility criteria were reviewed by additional reviewers with consensus resolution. Seven publications (six individual cases and two cohorts) were included. We additionally describe the clinical course, management, and outcome of a 70-year-old bilateral lung transplant patient who developed persistent C. krusei empyema despite optimized antifungal therapy. Patients ranged from 11 to 74 years of age (median 62.5 years). Predisposing factors included esophageal perforation (n = 4), post-transplant hemorrhage (n = 1), community-acquired empyema (n = 1), and thoracic surgery (n = 1). Empiric fluconazole was switched to caspofungin (3/4), with others receiving amphotericin B, voriconazole, or combination therapy. Source control varied: chest tube drainage (n = 3), percutaneous catheter (n = 3), and surgical decortication (n = 2). Mortality was 14.3% (1/7). In the absence of clear guidelines and robust literature, the management approach remains heterogeneous. Optimal care requires early recognition, aggressive multimodal antifungal therapy, and effective source control tailored to patient risk. Standardized antifungal protocols and larger case series are needed to guide clinicians in managing this challenging infection.
Full article
(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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Open AccessBrief Report
Baseline Sensitivity and Resistance Detection of Stemphylium lycopersici to Pydiflumetofen
by
Xiangyu Liu, Kexin Yang, Jie Wu, Qiuyan Bi, Fen Lu, Jiqiang Wang and Jianjiang Zhao
J. Fungi 2025, 11(10), 734; https://doi.org/10.3390/jof11100734 - 11 Oct 2025
Abstract
Tomato gray leaf spot (TGLS), caused by Stemphylium spp., is a common disease leading to significant economic losses in tomato production. Pydiflumetofen is a novel succinate dehydrogenase inhibitor (SDHI) fungicide that has been registered for TGLS management. To evaluate the susceptibility of S.
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Tomato gray leaf spot (TGLS), caused by Stemphylium spp., is a common disease leading to significant economic losses in tomato production. Pydiflumetofen is a novel succinate dehydrogenase inhibitor (SDHI) fungicide that has been registered for TGLS management. To evaluate the susceptibility of S. lycopersici to pydiflumetofen in tomato-producing regions of Hebei Province, we determined the sensitivity of 212 S. lycopersici isolates using mycelial growth inhibition. The sensitivity distribution exhibited a multimodal pattern. Resistance to pydiflumetofen was observed in some field isolates, with highly resistant isolates being identified in Chengde, Hengshui, and Tangshan. After removing outliers, the baseline sensitivity of S. lycopersici to pydiflumetofen was established, with a mean EC50 value of 1.0400 ± 0.0515 μg/mL. Sequence analysis revealed point mutations only in SdhC (SdhCS73P, SdhCG79R, SdhCH134R, SdhCS135R) among the resistant isolates. No significant differences were observed between certain resistant isolates (FQSL1-10 and FQSL1-14) and the sensitive isolates in temperature adaptability, mycelial growth rate, or pathogenicity. These results suggest that pydiflumetofen has high activity against TGLS, but integrated fungicide application is necessary for delaying resistance evolution in TGLS management.
Full article
(This article belongs to the Special Issue Plant Fungal Diseases and Crop Protection, 2nd Edition)
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Open AccessTechnical Note
Development and Optimization of Multi-Well Colorimetric Assays for Growth of Coccidioides posadasii Spherules and Their Application in Large-Scale Screening
by
Augusto Vazquez-Rodriguez, Jieh-Juen Yu, Chiung-Yu Hung and Jose L. Lopez-Ribot
J. Fungi 2025, 11(10), 733; https://doi.org/10.3390/jof11100733 - 11 Oct 2025
Abstract
Coccidioides immitis and Coccidioides posadasii, the causative agents of coccidioidomycosis, represent a major public health concern in endemic regions of North and South America. The disease spectrum ranges from mild respiratory illness to severe disseminated infections, with thousands of cases reported annually
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Coccidioides immitis and Coccidioides posadasii, the causative agents of coccidioidomycosis, represent a major public health concern in endemic regions of North and South America. The disease spectrum ranges from mild respiratory illness to severe disseminated infections, with thousands of cases reported annually in the United States and an increasing recognition of its global impact. Despite existing antifungal therapies, treatment remains challenging due to toxicity, drug resistance, and limited therapeutic options. High-throughput screening platforms have revolutionized drug discovery for infectious diseases; however, progress in antifungal screening for Coccidioides spp. has been hampered by the requirement for Biosafety Level 3 (BSL-3) containment. To overcome these barriers, we leveraged an attenuated C. posadasii strain that can be safely handled under BSL-2 conditions. Here, we describe the development and optimization of 96-well and 384-well plate screening methodologies, providing a safer and more efficient platform for antifungal discovery. This approach enhances the feasibility of large-scale screening efforts and may facilitate the identification of novel therapeutics for coccidioidomycosis.
Full article
(This article belongs to the Special Issue Basic Science and Clinical Research of Coccidioides and Coccidioidomycosis)
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Open AccessArticle
Evaluation of Wood Decay and Identification of Fungi Found in the USS Cairo, a Historic American Civil War Ironclad Gunboat
by
Robert A. Blanchette, Benjamin W. Held, Claudia Chemello and Paul Mardikian
J. Fungi 2025, 11(10), 732; https://doi.org/10.3390/jof11100732 - 11 Oct 2025
Abstract
Studies of microbial degradation of historic woods are essential to help protect and preserve these important cultural properties. The USS Cairo is a historic Civil War gunboat and one of the first steam-powered and ironclad ships used in the American Civil War. Built
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Studies of microbial degradation of historic woods are essential to help protect and preserve these important cultural properties. The USS Cairo is a historic Civil War gunboat and one of the first steam-powered and ironclad ships used in the American Civil War. Built in 1861, the ship sank in the Yazoo River of Mississippi in 1862 after a mine detonated and tore a hole in the port bow. The ship remained on the river bottom and was gradually buried with sediments for over 98 years. After recovery of the ship, it remained exposed to the environment before the first roofed structure was completed in 1980, and it has been displayed under a tensile fabric canopy with open sides at the Vicksburg National Military Park in Vicksburg, Mississippi. Concerns over the long-term preservation of the ship initiated this investigation to document the current condition of the wooden timbers, identify the fungi that may be present, and determine the elemental composition resulting from past wood-preservative treatments. Micromorphological characteristics observed using scanning electron microscopy showed that many of the timbers were in advanced stages of degradation. Eroded secondary cell walls leaving a weak framework of middle lamella were commonly observed. Soft rot attack was prevalent, and evidence of white and brown rot degradation was found in some wood. DNA extraction and sequencing of the ITS region led to the identification of a large group of diverse fungi that were isolated from ship timbers. Soft rot fungi, including Alternaria, Chaetomium, Cladosporium, Curvularia, Xylaria and others, and white rot fungi, including Bjerkandera, Odontoefibula, Phanerodontia, Phlebiopsis, Trametes and others, were found. No brown rot fungi were isolated. Elemental analyses using induced coupled plasma spectroscopy revealed elevated levels of all elements as compared to sound modern types of wood. High concentrations of boron, copper, iron, lead, zinc and other elements were found, and viable fungi were isolated from this wood. Biodegradation issues are discussed to help long-term conservation efforts to preserve the historic ship for future generations.
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(This article belongs to the Special Issue Mycological Research in Cultural Heritage Protection)
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Open AccessReview
Azole-Resistant Aspergillus fumigatus: Epidemiology, Diagnosis, and Treatment Considerations
by
Anna Zubovskaia
J. Fungi 2025, 11(10), 731; https://doi.org/10.3390/jof11100731 - 10 Oct 2025
Abstract
Invasive aspergillosis is an opportunistic infection caused by the Aspergillus species. It is a significant cause of morbidity and mortality in susceptible populations, including recipients of bone marrow and solid organ transplants. Azole antifungals have remained the first-line treatment for invasive aspergillosis for
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Invasive aspergillosis is an opportunistic infection caused by the Aspergillus species. It is a significant cause of morbidity and mortality in susceptible populations, including recipients of bone marrow and solid organ transplants. Azole antifungals have remained the first-line treatment for invasive aspergillosis for a long time; however, the advance of azole resistance in Aspergillus fumigatus, driven predominantly by extensive commercial and agricultural use of azole fungicides and environmental exposure of susceptible populations to the resistant strains, renders the traditional therapeutic approaches less effective and results in further increase in mortality. The epidemiology, molecular mechanisms of azole resistance, diagnostic approaches, and clinical implications of azole resistance in Aspergillus fumigatus sensu stricto will be discussed in this article (for ease of comprehension, the rest of this article will refer to A. fumigatus sensu stricto as A. fumigatus).
Full article
(This article belongs to the Special Issue Medical Mycology: Antifungal Resistance, Diagnosis, and Infection Control)
Open AccessArticle
A Model of the Current Geographic Distribution and Predictions of Future Range Shifts of Lentinula edodes in China Under Multiple Climate Change Scenarios
by
Wei-Jun Li, Rui-Heng Yang, Ting Guo, Sheng-Jin Wu, Yu Li and Da-Peng Bao
J. Fungi 2025, 11(10), 730; https://doi.org/10.3390/jof11100730 - 10 Oct 2025
Abstract
Due to its ecological functions, huge economic benefits, and excellent nutritional and physiological activities, Lentinula edodes is a very popular edible fungus in Asia, especially in China. Changes in the distribution and population of wild L. edodes play an important role in conservation,
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Due to its ecological functions, huge economic benefits, and excellent nutritional and physiological activities, Lentinula edodes is a very popular edible fungus in Asia, especially in China. Changes in the distribution and population of wild L. edodes play an important role in conservation, variety improvements, and breeding. This investigation detected wild L. edodes in 28 provinces and municipalities in China, encompassing approximately 300 regions and natural reserves. MaxEnt analysis of 53 effective distribution locations indicated that host plants, Bio19 (precipitation in the coldest quarter), Bio10 (mean temperature of the warmest quarter), and Bio17 (precipitation in the driest quarter) made the most critical contributions to this model. The areas of suitable and highly suitable habitats were 55.386 × 104 km2 and 88.493 × 104 km2, respectively. Under four climate change scenarios, the L. edodes distribution was predicted to decrease and the suitable habitat area shifted to the north and west of China. The decrease in highly suitable habitat area ranged from 21.155% in the 2070s under the ssp1-2.6 scenario to 90.522% in the 2050s under the ssp3-7.5 scenario. This sharp reduction in habitat areas suggests that we should take measures to prevent the deterioration of the environment and climate and thus to ensure the survival of L. edodes.
Full article
(This article belongs to the Special Issue Fungi in Sustainable Applications and the Circular Economy: A Themed Issue Dedicated to Academician Yu Li)
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Open AccessArticle
The Cytochrome P450 Enzyme SsCyp64 Mediates γ-linolenyl Alcohol in Regulating Sexual Mating/Filamentation and Pathogenicity of Sporisorium scitamineum
by
Enping Cai, Bo Xiong, Qiuping Ling, Xueting Li, Xinglong Chen, Changqing Chang, Jiayun Wu and Nannan Zhang
J. Fungi 2025, 11(10), 729; https://doi.org/10.3390/jof11100729 - 10 Oct 2025
Abstract
Sugarcane smut, caused by Sporisorium scitamineum, is a devastating fungal disease of sugarcane. Sexual mating/filamentation of opposite mating types is a key step in the infection and pathogenicity of S. scitamineum, yet its regulation remains unclear. In this study, we identified
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Sugarcane smut, caused by Sporisorium scitamineum, is a devastating fungal disease of sugarcane. Sexual mating/filamentation of opposite mating types is a key step in the infection and pathogenicity of S. scitamineum, yet its regulation remains unclear. In this study, we identified a cytochrome P450 enzyme-encoding gene, SsCYP64, which plays an important role in oxidative stress and maintaining cell membrane stability in S. scitamineum. Further investigations revealed that deletion of SsCYP64 leads to a decrease in the transcriptional level of SsPRF1, a key transcription factor regulating the sexual mating of S. scitamineum. Subsequently, the constitutive expression of SsPRF1 restored the defect in sexual mating/filamentation of the SsCYP64 deletion mutant, indicating that SsCyp64 regulates the sexual reproduction of S. scitamineum by mediating the transcriptional level of SsPRF1. In addition, metabolomic analysis revealed that the fatty alcohol metabolite γ-linolenyl alcohol significantly decreased in the SsCYP64 deletion mutant, whereas exogenous supplementation with γ-linolenyl alcohol increased the transcriptional level of SsPRF1 and partially restored the sexual mating/filamentation of the SsCYP64 deletion mutant. In conclusion, our results indicated that SsCyp64 mediated the transcription of SsPRF1 by modulating γ-linolenyl alcohol levels, thereby regulating the formation of dikaryotic hyphae in S. scitamineum. These findings provide new insights into the role of cytochrome P450 enzymes in the pathogenic process of plant pathogenic fungi.
Full article
(This article belongs to the Special Issue Pathogenic Fungi: Morphogenesis, Pathogenicity and Biosynthesis of Secondary Metabolites—Second Edition)
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Open AccessArticle
Identification of the Antagonistic Fungus Diaporthe phoenicicola Against Rhododendron Brown Spot Disease and Its Disease Control and Plant Growth-Promoting Efficacy
by
Yajiao Sun, Jian Liu, Huali Li, Guangyao Zhu, Chengfen Zhu, Junjia Lu and Yunqiang Ma
J. Fungi 2025, 11(10), 728; https://doi.org/10.3390/jof11100728 - 10 Oct 2025
Abstract
To explore superior biocontrol resources for Rhododendron brown spot disease, five antagonistic fungal strains exhibiting significant inhibitory activity against the pathogen responsible for RBS were isolated from healthy Rhododendron hybridum Ker Gawl leaves. Among them, strain DJW5-2-1 demonstrated the highest inhibition rate, reaching
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To explore superior biocontrol resources for Rhododendron brown spot disease, five antagonistic fungal strains exhibiting significant inhibitory activity against the pathogen responsible for RBS were isolated from healthy Rhododendron hybridum Ker Gawl leaves. Among them, strain DJW5-2-1 demonstrated the highest inhibition rate, reaching 63.88% against the pathogenic fungus. Based on morphological characteristics and multigene phylogenetic analysis (ITS, β-tubulin, and tef1-α), DJW5-2-1 was identified as Diaporthe phoenicicola (Traverso & Spessa) Udayanga, Crous & K.D. Hyde. Dual culture assays further confirmed its broad-spectrum antifungal activity, with inhibition rates ranging from 39.15% to 72.54% against various phytopathogenic fungi. Biochemical analyses revealed that DJW5-2-1 secretes multiple extracellular enzymes and exhibits plant growth-promoting traits. In both in vitro and potted plant efficacy assays, the biocontrol efficacy of strain DJW5-2-1 against RBS was 49.67% and 50.61%, respectively, indicating that strain DJW5-2-1 exhibits a certain level of control efficacy against RBS. Through pot experiments, we found that strain DJW5-2-1 could promote the growth of rhododendron seedlings and significantly increase growth indicators. Among these indicators, the growth-promoting rates of plant height and stem diameter were 15.27% and 41.27%, respectively. Moreover, DJW5-2-1 contributed to improved host resistance by elevating the activities of key defense-related enzymes, including superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and polyphenol oxidase (PPO). Taken together, these findings suggest that strain DJW5-2-1 represents a promising microbial agent for the integrated control of RBS and the development of fungal-based biofertilizers. Further investigation is warranted to assess its performance under field conditions and elucidate its underlying mechanisms of action.
Full article
(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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Open AccessArticle
Molecular Identification, Mycelial Growth Kinetics, and Antimicrobial Potential of Newly Isolated Medicinal Mushroom Fomitopsis pinicola from Bulgaria
by
Petya Stefanova, Anateya Georgieva, Mariya Brazkova, Radka Baldzhieva, Bogdan Goranov, Denica Blazheva, Anton Slavov and Galena Angelova
J. Fungi 2025, 11(10), 727; https://doi.org/10.3390/jof11100727 - 10 Oct 2025
Abstract
The present study is focused on a newly isolated Fomitopsis strain obtained from black pine (Pinus nigra) from the Sredna Gora Mountains, Bulgaria. Molecular identification, based on ITS1-5.8S-ITS2 region sequencing, confirmed the strain as Fomitopsis pinicola with 99.84 BLAST percent identity.
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The present study is focused on a newly isolated Fomitopsis strain obtained from black pine (Pinus nigra) from the Sredna Gora Mountains, Bulgaria. Molecular identification, based on ITS1-5.8S-ITS2 region sequencing, confirmed the strain as Fomitopsis pinicola with 99.84 BLAST percent identity. Phylogenetic analysis verified that the new fungal isolate belongs to the European F. pinicola clade. The morphological analysis of the strain revealed several distinctive structures that further support its identification. The influence of culture media composition on fungal development was evaluated by analyzing the mycelial growth kinetics using both the logistic growth model and the reversible autocatalytic model. Submerged cultivation was employed to produce fungal biomass, which was subsequently lyophilized and used for the assessment of the antimicrobial potential of the fungal strain. The results demonstrated notable antimicrobial effects against all tested bacterial strains. The most significant activity was observed for the aqueous extract against Escherichia coli and the hexane extract against Salmonella enteritidis, both with a minimum inhibitory concentration of 312.5 µg/mL. These findings highlight the promising potential of the newly isolated F. pinicola strain for future applications in the medical and pharmaceutical industries, particularly in developing drugs to combat multidrug resistance, based on the promising results of its water extracts.
Full article
(This article belongs to the Special Issue Fungal Diversity in Various Environments, 4th Edition)
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Open AccessArticle
Distribution of Airborne Fungi in Vehicles and Its Association with Usage Patterns
by
Raúl Asael Rodríguez-Villarreal, Mariana Elizondo-Zertuche, Nydia Orué-Arreola, Juan Adame-Rodríguez, Larissa E. Gordillo-Mata, Miguel González-Enríquez, Brandon Ortega-Castillo, Patricio Adrián Zapata-Morín and Efrén Robledo-Leal
J. Fungi 2025, 11(10), 725; https://doi.org/10.3390/jof11100725 - 10 Oct 2025
Abstract
Airborne fungal exposure in confined indoor environments is a growing public health concern, however the microbial composition of air inside private vehicles remains underexplored. This study aimed to characterize culturable airborne fungi in vehicle cabins and evaluate their association with environmental and behavioral
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Airborne fungal exposure in confined indoor environments is a growing public health concern, however the microbial composition of air inside private vehicles remains underexplored. This study aimed to characterize culturable airborne fungi in vehicle cabins and evaluate their association with environmental and behavioral variables. Air samples (100 L) were collected from 69 vehicles using a standardized culture-based method. Simultaneously, a detailed survey was administered to vehicle owners to document usage patterns, maintenance habits, and odor perception. Results revealed a total culturable fungal load of 31,901 CFU/m3, with Cladosporium, Aspergillus, and Penicillium as the most frequently isolated genera. Statistical analysis showed that fungal abundance and community composition were significantly associated with vehicle usage factors such as air disturbance, parking environment, air filter maintenance, and perception of musty odors. Vehicles parked outdoors had significantly higher Bipolaris levels, while lack of regular filter replacement was strongly associated with elevated Alternaria abundance. The presence of musty or moldy odors correlated with a 2.5-fold increase in Aspergillus levels. Redundancy analysis confirmed that odor perception and parking behavior were the strongest predictors of fungal community structure, with specific genera displaying distinct ecological preferences across usage conditions. Usage patterns and maintenance habits significantly influence in-cabin fungal communities, with implications for respiratory health, particularly due to the presence of allergenic and opportunistic genera like Aspergillus, Alternaria, and Bipolaris. Regular air filter maintenance and attention to odor cues may help reduce fungal load and associated health risks.
Full article
(This article belongs to the Special Issue Mycological Research in Mexico)
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Open AccessReview
Exploring Fungal Communication Mechanisms in the Rhizosphere Microbiome for a Sustainable Green Agriculture
by
Jing Gao, Anqi Dong, Jiayi Li, Jiayu Xu, Zhihong Liang and Antonio Francesco Logrieco
J. Fungi 2025, 11(10), 726; https://doi.org/10.3390/jof11100726 - 9 Oct 2025
Abstract
In the long-term evolutionary process, species maintain a natural balance within certain limits through communication. As plants grow and function as producers, root enrichment fosters a dynamic rhizosphere microbiome, which serves not only as a disintegrator within the ecological niche but also as
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In the long-term evolutionary process, species maintain a natural balance within certain limits through communication. As plants grow and function as producers, root enrichment fosters a dynamic rhizosphere microbiome, which serves not only as a disintegrator within the ecological niche but also as a medium for interaction between the host and the soil environment. The life cycle of fungi within the microbiome alternates between single-cell resting spores and multicellular trophic mycelia. This cycle not only establishes a stable rhizosphere environment but also plays a crucial role in regulating both intra- and interspecific information transmission, significantly impacting the environment and plant health. The rhizosphere microbiome, particularly the fungi it contains, can be harnessed to repair environmental damage and either promote the growth of the plant host or inhibit pathogens. However, the mechanisms underlying these actions remain inadequately understood, hindering the advancement of artificial regulation. Additionally, the variability of influencing factors, along with unstable genes and traits, poses challenges to industrial development. In conclusion, this paper focuses on the fungal components of the rhizosphere microbiome, introduces the mechanisms of communication and current applications, and further analyzes existing bottlenecks and potential solutions. The aim is to provide theoretical support for achieving green, sustainable agriculture through biological means.
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(This article belongs to the Section Environmental and Ecological Interactions of Fungi)
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Open AccessArticle
The Mechanism of Fraxetin as a Sustainable Fungicide for Larch Shoot Blight: Lipid Peroxidation and Oxidative Stress in Neofusicoccum laricinum
by
Shuang Zhang, Ruizhi Zhang, Rui Xia, Xinyan Chen, Jiarui Chen, Yuchun Yang, Majid Mujtaba, Danlei Li and Feng Wang
J. Fungi 2025, 11(10), 724; https://doi.org/10.3390/jof11100724 - 8 Oct 2025
Abstract
Larch shoot blight, caused by Neofusicoccum laricinum, threatens global larch resources, while conventional chemical control is constrained by pollution and resistance. To address this gap, we integrated metabolomics, transcriptomics, and antifungal efficacy assays to identify Fraxetin, a disease-induced phytoalexin, and to elucidate
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Larch shoot blight, caused by Neofusicoccum laricinum, threatens global larch resources, while conventional chemical control is constrained by pollution and resistance. To address this gap, we integrated metabolomics, transcriptomics, and antifungal efficacy assays to identify Fraxetin, a disease-induced phytoalexin, and to elucidate its antifungal activity and mechanism. Metabolomics showed infection-triggered accumulation of Fraxetin in resistant Larix olgensis shoots. Antifungal experiments showed that within the range of 68–1088 μg/mL, the optimal antifungal concentration was 1088 μg/mL. When inoculated larches were treated with 1088 μg/mL Fraxetin, the maximum inhibition rate of pathogen growth reached 66.67% within 12 days, and the symptoms of the treated plants were alleviated. Transcriptomics revealed activation of damage responses, disruption of oxidative homeostasis, and compromised membrane integrity in the pathogen under Fraxetin treatment. Physiological measurements confirmed increased lipid peroxidation, redox collapse, membrane leakage, and reduced fungal viability. These findings indicate a lipid peroxidation–mediated oxidative–membrane mode of action and support the potential of plant-derived Fraxetin for more sustainable management of larch shoot blight.
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(This article belongs to the Section Environmental and Ecological Interactions of Fungi)
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Open AccessCase Report
When Fungal Prophylaxis Fails: A Rare Case of Rhodotorula mucilaginosa Fungemia with Suspected Abdominal Origin
by
Elia Asensi-Díaz, Laura Barbero del Olmo, Patricia Urrutia, Ana Lario, Elia Gómez-G. de la Pedrosa, Alejandro G. García-Ruiz de Morales, Pilar Martín-Dávila and Jesús Fortún
J. Fungi 2025, 11(10), 723; https://doi.org/10.3390/jof11100723 - 8 Oct 2025
Abstract
We report a rare case of Rhodotorula mucilaginosa fungemia with a suspected abdominal origin in a 73-year-old man with advanced haematological disease on fluconazole prophylaxis. The patient presented with febrile neutropenia caused by a jejunal microperforation. Despite broad-spectrum antibiotics, the fever persisted, and
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We report a rare case of Rhodotorula mucilaginosa fungemia with a suspected abdominal origin in a 73-year-old man with advanced haematological disease on fluconazole prophylaxis. The patient presented with febrile neutropenia caused by a jejunal microperforation. Despite broad-spectrum antibiotics, the fever persisted, and Rhodotorula mucilaginosa was isolated from blood cultures. High-dose liposomal amphotericin B achieved microbiological clearance and clinical improvement. The case was further complicated by coinfection with Aspergillus fumigatus and Klebsiella oxytoca. To our knowledge, this is one of the few reported cases of abdominal Rhodotorula fungemia, and the first described in the context of fluconazole prophylaxis. This report emphasises the importance of recognising Rhodotorula as a true pathogen and highlights the challenges of managing rare fungal infections in immunocompromised hosts.
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(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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Open AccessArticle
From Isolation to Genomics: Characterization of Aspergillus uvarum HT4 as a Novel Producer of Extracellular Tannase
by
Erika Arbildi, Karen Ovsejevi, Diego Roldán, Rosario Durán, Magdalena Portela, Gabriela Garmendia and Silvana Vero
J. Fungi 2025, 11(10), 722; https://doi.org/10.3390/jof11100722 - 7 Oct 2025
Abstract
Tannases (tannin acyl hydrolases, EC 3.1.1.20) are enzymes of industrial interest due to their ability to hydrolyze hydrolyzable tannins into bioactive compounds like gallic acid. In this study fungal strains capable of producing extracellular tannase were isolated and identified. From tannin-rich substrates, 24
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Tannases (tannin acyl hydrolases, EC 3.1.1.20) are enzymes of industrial interest due to their ability to hydrolyze hydrolyzable tannins into bioactive compounds like gallic acid. In this study fungal strains capable of producing extracellular tannase were isolated and identified. From tannin-rich substrates, 24 fungal isolates were obtained, of which 17 showed tannase activity. Molecular identification based on calmodulin gene sequencing identified three species of tannase-producing black aspergilli: Aspergillus luchuensis, A. niger (formerly A. welwitschiae), and A. uvarum. The isolate A. uvarum HT4 exhibited the highest extracellular tannase activity (182 U/mL) and was selected for further study. Whole-genome sequencing of HT4 revealed 15 putative tannase genes, most sharing high identity with A. uvarum CBS 121591. Two divergent genes appeared to be acquired via horizontal gene transfer from Aspergillus brunneoviolaceus and Penicillium angulare. Proteomic analysis of the secretome confirmed the expression of two extracellular tannases. The enzyme showed optimal activity at pH 5.0–6.0 and 40–50 °C. Secretome analysis revealed hydrolytic enzymes typical of saprophytic fungi in lignocellulose-rich environments. Importantly, no biosynthetic gene clusters of major mycotoxins were detected, supporting the biosafety of HT4 for industrial applications.
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(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
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Open AccessReview
Fungal Innovations—Advancing Sustainable Materials, Genetics, and Applications for Industry
by
Hannes Hinneburg, Shanna Gu and Gita Naseri
J. Fungi 2025, 11(10), 721; https://doi.org/10.3390/jof11100721 - 6 Oct 2025
Abstract
Fungi play a crucial yet often unnoticed role in our lives and the health of our planet by breaking down organic matter through their diverse enzymes or eliminating environmental contamination, enhancing biomass pretreatment, and facilitating biofuel production. They offer transformative possibilities not only
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Fungi play a crucial yet often unnoticed role in our lives and the health of our planet by breaking down organic matter through their diverse enzymes or eliminating environmental contamination, enhancing biomass pretreatment, and facilitating biofuel production. They offer transformative possibilities not only for improving the production of materials they naturally produce, but also for the production of non-native and even new-to-nature materials. However, despite these promising applications, the full potential of fungi remains untapped mainly due to limitations in our ability to control and optimize their complex biological systems. This review focuses on developments that address these challenges, with specific emphasis on fungal-derived rigid and flexible materials. To achieve this goal, the application of synthetic biology tools—such as programmable regulators, CRISPR-based genome editing, and combinatorial pathway optimization—in engineering fungal strains is highlighted, and how external environmental parameters can be tuned to influence material properties is discussed. This review positions filamentous fungi as promising platforms for sustainable bio-based technologies, contributing to a more sustainable future across various sectors.
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(This article belongs to the Special Issue Utilizing Fungal Diversity for Sustainable Biotechnology)
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Open AccessReview
HTS and PCR Methods Are the Most Used in the Diagnosis of Aspergillosis: Advantages over Other Molecular Methods
by
Carlos Alberto Castro-Fuentes, Esperanza Duarte-Escalante, María Guadalupe Frías-De-León, María del Carmen Auxilio González-Villaseñor and María del Rocío Reyes-Montes
J. Fungi 2025, 11(10), 720; https://doi.org/10.3390/jof11100720 - 6 Oct 2025
Abstract
Aspergillosis includes a variety of diseases caused by species of the genus Aspergillus, ranging from non-invasive allergic diseases to chronic, invasive pulmonary infections, which are potentially fatal in immunocompromised hosts. Therefore, there is an urgent need for new diagnostic tools and the
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Aspergillosis includes a variety of diseases caused by species of the genus Aspergillus, ranging from non-invasive allergic diseases to chronic, invasive pulmonary infections, which are potentially fatal in immunocompromised hosts. Therefore, there is an urgent need for new diagnostic tools and the optimization of existing tests to improve patient care. This work reviews the most commonly used molecular methods for the diagnosis of aspergillosis from clinical samples, emphasizing their advantages. These methods included HTS, NTS, ISH, microarrays, PCR-RFLP, LAMP, and PCR in various modalities (qPCR, multiplex PCR, nested PCR, RT-PCR, endpoint PCR, U-dHRM, and ddPCR). The review showed that the most commonly used methods for diagnosing aspergillosis are NGS and PCR in their different modalities; however, each method has advantages and disadvantages. qPCR is the method that has demonstrated the greatest sensitivity and specificity on clinical samples (such as blood, serum, bronchoalveolar lavage [BAL], tissue, or sputum), since it detects specific sequences, and the validation of this method shows greater progress in achieving this objective. Likewise, NGS showed that BAL is the most suitable sample, with a higher fungal load than sputum or blood. On the other hand, NGS is not a targeted technique, since it sequences all the genetic material present. Additionally, the sensitivity for detecting pathogens decreases when clinical samples are used due to the high background of nucleic acids present in the human host.
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(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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