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107 Results Found

  • Article
  • Open Access
1 Citations
1,847 Views
16 Pages

8 July 2024

Low-temperature bioleaching is relevant to the recovery of metals in alpine mines, but its development has been constrained by low bioleaching rates at high pulp concentrations. To this end, the bioleaching effect of the microbial community after the...

  • Review
  • Open Access
1 Citations
3,158 Views
20 Pages

The Ecological–Evolutionary Game of the Insect Gut Microbiome: Environmental Drivers, Host Regulation, and Prospects for Cross-Cutting Applications

  • Ying Wang,
  • Jie Tang,
  • Yao Chen,
  • Shuyi Chen,
  • Sumin Chen,
  • Xin Yu,
  • Caijing Wan,
  • Guoqi Xiang,
  • Yaping Chen and
  • Qiang Li

5 September 2025

The insect gut contains a complex and diverse microbial community, and the composition of the insect gut microbial community is influenced by multiple factors such as the host’s genetics, dietary habits, and the external environment. The host&r...

  • Review
  • Open Access
22 Citations
6,082 Views
38 Pages

Gut Microbial Metabolome and Dysbiosis in Neurodegenerative Diseases: Psychobiotics and Fecal Microbiota Transplantation as a Therapeutic Approach—A Comprehensive Narrative Review

  • Sara Uceda,
  • Víctor Echeverry-Alzate,
  • Manuel Reiriz-Rojas,
  • Esther Martínez-Miguel,
  • Ana Pérez-Curiel,
  • Silvia Gómez-Senent and
  • Ana Isabel Beltrán-Velasco

27 August 2023

The comprehensive narrative review conducted in this study delves into the mechanisms of communication and action at the molecular level in the human organism. The review addresses the complex mechanism involved in the microbiota–gut–brai...

  • Article
  • Open Access
6 Citations
5,599 Views
16 Pages

Micro-Food Web Structure Shapes Rhizosphere Microbial Communities and Growth in Oak

  • Hazel R. Maboreke,
  • Veronika Bartel,
  • René Seiml-Buchinger and
  • Liliane Ruess

13 March 2018

The multitrophic interactions in the rhizosphere impose significant impacts on microbial community structure and function, affecting nutrient mineralisation and consequently plant performance. However, particularly for long-lived plants such as fores...

  • Review
  • Open Access
11 Citations
2,937 Views
15 Pages

As an essential unconventional natural gas resource, China’s coalbed methane resources are only commercially exploited in a few areas, such as the Qinshui Basin and the Ordos. The rise of coalbed methane bioengineering makes it possible to real...

  • Review
  • Open Access
235 Citations
52,016 Views
19 Pages

Ketogenic Diet and Microbiota: Friends or Enemies?

  • Antonio Paoli,
  • Laura Mancin,
  • Antonino Bianco,
  • Ewan Thomas,
  • João Felipe Mota and
  • Fabio Piccini

15 July 2019

Over the last years, a growing body of evidence suggests that gut microbial communities play a fundamental role in many aspects of human health and diseases. The gut microbiota is a very dynamic entity influenced by environment and nutritional behavi...

  • Review
  • Open Access
7 Citations
2,774 Views
14 Pages

While confronted with unfavorable growth conditions, bacteria may transform into the dormant state, such as viable but nonculturable (VBNC) state, which is a reversible state characterized by low metabolic activity and lack of division. These dormant...

  • Review
  • Open Access
8 Citations
4,608 Views
23 Pages

The Gut Connection: Exploring the Possibility of Implementing Gut Microbial Metabolites in Lymphoma Treatment

  • Ahmad K. Al-Khazaleh,
  • Dennis Chang,
  • Gerald W. Münch and
  • Deep Jyoti Bhuyan

11 April 2024

Recent research has implicated the gut microbiota in the development of lymphoma. Dysbiosis of the gut microbial community can disrupt the production of gut microbial metabolites, thereby impacting host physiology and potentially contributing to lymp...

  • Article
  • Open Access
1 Citations
1,382 Views
16 Pages

Significant Enrichment of Potential Pathogenic Fungi in Soil Mediated by Flavonoids, Phenolic Acids, and Organic Acids

  • Shaoguan Zhao,
  • Yan Sun,
  • Lanxi Su,
  • Lin Yan,
  • Xingjun Lin,
  • Yuzhou Long,
  • Ang Zhang and
  • Qingyun Zhao

17 February 2025

It is well established that root exudates play a crucial role in shaping the assembly of plant rhizosphere microbial communities. Nonetheless, our understanding of how different types of exudates influence the abundance of potential pathogens in soil...

  • Article
  • Open Access
663 Views
18 Pages

21 October 2025

Biochar shows potential for regulating nitrogen cycling in cold-region soils, but the roles of its different fractions during freeze-thaw cycles (FTCs) remain unclear. To elucidate the regulation of cold-region soil environments by biochar at the fra...

  • Article
  • Open Access
29 Citations
1,890 Views
9 Pages

Tigecycline – how powerful is it in the fight against antibiotic-resistant bacteria?

  • Vaida Šeputienė,
  • Justas Povilonis,
  • Julija Armalytė,
  • Kęstutis Sužiedėlis,
  • Alvydas Pavilonis and
  • Edita Sužiedėlienė

11 April 2010

Tigecycline is a semisynthetic analogue of earlier tetracyclines and represents the first member of a novel class of antimicrobials – glycylcyclines – recently approved for clinical use. It is active against a broad range of gram-negative and gram-po...

  • Article
  • Open Access
2 Citations
2,255 Views
16 Pages

Hydrochar produced during the hydrothermal conversion of organic solid waste could enhance the anaerobic digestion (AD) efficiency of hydrothermal pre-treated sludge. However, there was still a lack of systematic research on the effect of hydrochar o...

  • Article
  • Open Access
1 Citations
1,452 Views
18 Pages

17 December 2024

The primary mechanism through which organic amendments enhance the nodulation ability of leguminous crops involves increasing the content of available phosphorus (AP) in the soil. Despite this, the role of plant rhizosphere microbial communities has...

  • Article
  • Open Access
4 Citations
3,390 Views
28 Pages

17 January 2022

Farmland land consolidation can effectively improve the quality of farmland soil and the agricultural production level, and can effectively guarantee farmland ecology and food security, which has been widely used in the world. A large number of studi...

  • Review
  • Open Access
2 Citations
3,305 Views
21 Pages

Effects of Microbial Agents on Soil Improvement—A Review and Bibliometric Analysis

  • Mengdi Tan,
  • Tianjiao Feng,
  • Cong Wang,
  • Xiaozhen Hao and
  • Hang Yu

17 May 2025

Microbial agents play a crucial role in improving soil quality, increasing soil fertility, enhancing crop yields, and reducing the incidence of diseases. The ecological benefits of these products contribute to environmental protection and to the prom...

  • Article
  • Open Access
1 Citations
772 Views
13 Pages

Microbial communities, as critical functional components of riverine ecosystems, play a pivotal role in biogeochemical cycles and water quality regulation. The South-to-North Water Diversion Middle Route Project (SNWD-MRP) is a major cross-basin wate...

  • Article
  • Open Access
21 Citations
5,359 Views
13 Pages

Effects of Saccharomyces Cerevisiae Fermentation Products on the Microbial Community throughout the Gastrointestinal Tract of Calves

  • Jianxin Xiao,
  • Gibson M. Alugongo,
  • Shoukun Ji,
  • Zhaohai Wu,
  • Shuangzhao Dong,
  • Shengi Li,
  • Ilkyu Yoon,
  • Ruby Chung and
  • Zhijun Cao

21 December 2018

The effect of Saccharomyces cerevisiae fermentation products (SCFP) on improving growth and health of calves could be attributed to the ability of SCFP to modulate the microbiota in the gastrointestinal tract (GIT). However, the changes in microbial...

  • Review
  • Open Access
7 Citations
3,742 Views
19 Pages

Efflux, Signaling and Warfare in a Polymicrobial World

  • Ay’sha Moore-Machacek,
  • Antje Gloe,
  • Niall O’Leary and
  • F. Jerry Reen

The discovery void of antimicrobial development has occurred at a time when the world has seen a rapid emergence and spread of antimicrobial resistance, the ‘perfect storm’ as it has often been described. While the discovery and developme...

  • Review
  • Open Access
102 Citations
6,898 Views
25 Pages

Metallic Nanoparticles: A Promising Arsenal against Antimicrobial Resistance—Unraveling Mechanisms and Enhancing Medication Efficacy

  • Shahid Wahab,
  • Alishba Salman,
  • Zaryab Khan,
  • Sadia Khan,
  • Chandran Krishnaraj and
  • Soon-Il Yun

4 October 2023

The misuse of antibiotics and antimycotics accelerates the emergence of antimicrobial resistance, prompting the need for novel strategies to combat this global issue. Metallic nanoparticles have emerged as effective tools for combating various resist...

  • Article
  • Open Access
8 Citations
3,683 Views
12 Pages

Citrus huanglongbing (HLB) is a devastating disease for the citrus industry. The previous studies demonstrated that oxytetracycline and penicillin are effective antibiotics against Candidatus Liberibacter asiaticus (CLas). However, since CLas is uncu...

  • Article
  • Open Access
19 Citations
3,520 Views
21 Pages

Atrial Natriuretic Peptide Affects Skin Commensal Staphylococcus epidermidis and Cutibacterium acnes Dual-Species Biofilms

  • Maria Alekseevna Ovcharova,
  • Olga Vyacheslavovna Geraskina,
  • Natalya Dmitrievna Danilova,
  • Ekaterina Alexandrovna Botchkova,
  • Sergey Vladislavovich Martyanov,
  • Alexey Valeryevich Feofanov,
  • Vladimir Konstantinovich Plakunov and
  • Andrei Vladislavovich Gannesen

The first evidence of the atrial natriuretic peptide (ANP) effect on mono-species and dual-species biofilms of skin commensals Cutibacterium acnes and Staphylococcus epidermidis was obtained in different model systems. Elucidation of the mechanism of...

  • Review
  • Open Access
142 Citations
13,523 Views
25 Pages

Facing Climate Change: Application of Microbial Biostimulants to Mitigate Stress in Horticultural Crops

  • Daniela Sangiorgio,
  • Antonio Cellini,
  • Irene Donati,
  • Chiara Pastore,
  • Claudia Onofrietti and
  • Francesco Spinelli

In the current scenario of rapidly evolving climate change, crop plants are more frequently subjected to stresses of both abiotic and biotic origin, including exposure to unpredictable and extreme climatic events, changes in plant physiology, growing...

  • Review
  • Open Access
460 Views
30 Pages

Fatty Acids as Prebiotics and Their Role in Antibiofilm Activity

  • Filomena Nazzaro,
  • Francesca Coppola,
  • Florinda Fratianni and
  • Raffaele Coppola

Microbial biofilms pose significant medical and industrial challenges due to their resistance to conventional antimicrobials, accounting for 40–80% of bacteria in various environments. This resistance primarily results from the extracellular po...

  • Review
  • Open Access
12 Citations
5,121 Views
21 Pages

8 July 2024

The gut has been a focus of chronic disease research. The gut microbiota produces metabolites that act as signaling molecules and substrates, closely influencing host health. Nondigestible oligosaccharides (NDOs), as a common dietary fiber, play an i...

  • Review
  • Open Access
151 Citations
16,364 Views
33 Pages

30 December 2019

The organisms thriving under extreme conditions better than any other organism living on Earth, fascinate by their hostile growing parameters, physiological features, and their production of valuable bioactive metabolites. This is the case of microor...

  • Article
  • Open Access
2 Citations
1,490 Views
17 Pages

5 May 2025

Understory vegetation is an important component of forest ecosystems, and the supply of nutrients in the soil is related to the growth and development of soil microorganisms and understory plants. The effects of different tree species composition rat...

  • Article
  • Open Access
53 Citations
9,150 Views
23 Pages

The application of Biolog EcoPlate™ for community-level physiological profiling of soils is well documented; however, the functional diversity of aquatic bacterial communities has been hardly studied. The objective of this study was to investigate th...

  • Article
  • Open Access
6 Citations
1,936 Views
20 Pages

Response of Yields, Soil Physiochemical Characteristics, and the Rhizosphere Microbiome to the Occurrence of Root Rot Caused by Fusarium solani in Ligusticum chuanxiong Hort.

  • Xiaofang Sun,
  • Yong Liu,
  • Lian He,
  • Zaiyin Kuang,
  • Shundong Dai,
  • Lixia Hua,
  • Qiuping Jiang,
  • Taiyang Wei,
  • Pengsheng Ye and
  • Hualan Zeng

Ligusticum chuanxiong Hort. is considered an important medicinal herb with extremely high economic value and medicinal value due to its various effects, including anti-oxidation, sedative action, hepatoprotection, and invigorating blood circulation....

  • Article
  • Open Access
1,198 Views
18 Pages

Groundwater harbors phylogenetically diverse Candidate Phyla Radiation (CPR) bacteria, representing an ideal ecosystem for studying this microbial dark matter. However, no CPR strains have been successfully isolated from groundwater, severely limitin...

  • Article
  • Open Access
1 Citations
1,513 Views
15 Pages

Dietary Mycotoxins Effects on Nile Tilapia (Oreochromis niloticus) Microbiomes Can Be Mitigated with Addition of Organically Modified Clinoptilolites

  • Wanvisa Hussein,
  • Paulina Cholewińska,
  • Konrad Wojnarowski,
  • Natalia Szeligowska,
  • Fangyuan Hu,
  • Monika Greguła-Kania,
  • Jiraporn Rojtinnakorn and
  • Dušan Palić

31 October 2024

Mechanisms of action attributed to feed additives are of continuous research interest, increasing our knowledge about the side effects (direct or indirect) of their application. The primary role of organically modified clinoptilolite is to bind multi...

  • Review
  • Open Access
3 Citations
2,560 Views
20 Pages

10 August 2023

The bibliometric analysis technique was used to retrieve 232 relevant publications from the Web of Science core database published between 2002 and 2022. The basic characteristics of the literature were analyzed, and keyword co-occurrence analysis an...

  • Article
  • Open Access
29 Citations
9,365 Views
13 Pages

16 July 2020

Allulose has been reported to serve as an anti-obesity and anti-diabetic food component; however, its molecular mechanism is not yet completely understood. This study aims to elucidate the mechanisms of action for allulose in obesity-induced type 2 d...

  • Article
  • Open Access
5 Citations
1,940 Views
14 Pages

Polycyclic aromatic hydrocarbons (PAHs) cause serious stress to biological health and the soil environment as persistent pollutants. Despite the wide use of biochar in promoting soil improvement, the mechanism of biochar removing soil PAHs through rh...

  • Review
  • Open Access
906 Views
30 Pages

20 November 2025

Aflatoxin B1 (AFB1) is a naturally occurring contaminant pervasively found in agricultural produce, exhibiting extremely high carcinogenicity, teratogenicity and immunotoxicity, thereby constituting a substantial menace to worldwide food security and...

  • Review
  • Open Access
54 Citations
6,771 Views
16 Pages

18 April 2020

Inflammatory bowel diseases (IBDs) are a group of chronic autoinflammatory diseases including Crohn’s disease and ulcerative colitis. Although the molecular mechanisms governing the pathogenesis of gastrointestinal inflammation are not complete...

  • Review
  • Open Access
143 Citations
18,520 Views
22 Pages

Phosphorus is an essential nutrient for all life on earth and has a major impact on plant growth and crop yield. The forms of phosphorus that can be directly absorbed and utilized by plants are mainly HPO42− and H2PO4−, which are known as...

  • Article
  • Open Access
451 Views
18 Pages

Mining the Impact of Mechanical-Stamping Heterogeneity on the Macro- and Micro-Levels of Nongxiangxing daqu

  • Muwen He,
  • Xiu Zhang,
  • Ran Zhang,
  • Bo Zhang,
  • Rongqing Zhou,
  • Chongde Wu,
  • Chao Wang,
  • Yi Dong and
  • Yao Jin

29 October 2025

In the production of modern nongxiangxing daqu, mechanical stamping is utilized to compact raw materials into daqu bricks. Nevertheless, variations in stamping frequencies may modify the initial physicochemical properties of daqu, which in turn influ...

  • Article
  • Open Access
2 Citations
1,576 Views
17 Pages

Comparative Analysis of the Effects of Crude Metabolic Extracts of Three Biocontrol Bacteria on Microbial Community Structure Provides a New Strategy for the Biological Control of Apple Replant Disease

  • Jinhui Lv,
  • Weitao Jiang,
  • Zihui Xu,
  • Gongshuai Wang,
  • Xiaoxuan Li,
  • Xinyu Wu,
  • Fengxia Ding,
  • Yusong Liu,
  • Xuesen Chen and
  • Zhiquan Mao
  • + 1 author

29 September 2024

The crude metabolic extract from plant biocontrol bacteria plays a very important role in sustainable agricultural production. These extracts help maintain healthy plants and have very important application prospects in biotechnology related to allev...

  • Feature Paper
  • Review
  • Open Access
46 Citations
7,538 Views
17 Pages

Enhanced Anaerobic Digestion by Stimulating DIET Reaction

  • Alsayed Mostafa,
  • Seongwon Im,
  • Young-Chae Song,
  • Yongtae Ahn and
  • Dong-Hoon Kim

3 April 2020

Since the observation of direct interspecies electron transfer (DIET) in anaerobic mixed cultures in 2010s, the topic “DIET-stimulation” has been the main route to enhance the performance of anaerobic digestion (AD) under harsh conditions...

  • Review
  • Open Access
2 Citations
3,473 Views
13 Pages

Innovative Approaches for Engineering the Seed Microbiome to Enhance Crop Performance

  • Piao Yang,
  • Ling Lu,
  • Abraham Condrich,
  • Gavin A. Muni,
  • Sean Scranton,
  • Shixiang Xu,
  • Ye Xia and
  • Shuai Huang

14 May 2025

Seed science is the comprehensive study of seeds. It encompasses their biology, production, technology, genetics, physiology, ecology, and applications in agriculture and conservation. Seed science has undergone transformative advancements through th...

  • Article
  • Open Access
8 Citations
3,675 Views
15 Pages

Limnospira indica PCC 8005 or Lacticaseibacillus rhamnosus GG Dietary Supplementation Modulate the Gut Microbiome in Mice

  • Charlotte Segers,
  • Mohamed Mysara,
  • Amelie Coolkens,
  • Sarah Baatout,
  • Natalie Leys,
  • Sarah Lebeer,
  • Mieke Verslegers and
  • Felice Mastroleo

While dietary supplements can have beneficial effects on the health of the intestine, these effects can come with unresolved issues in terms of therapeutic efficacy and mechanisms of action. In this study, the model probiotic Lacticaseibacillus rhamn...

  • Review
  • Open Access
272 Citations
14,202 Views
15 Pages

Action of Antimicrobial Peptides against Bacterial Biofilms

  • Muhammad Yasir,
  • Mark Duncan Perry Willcox and
  • Debarun Dutta

5 December 2018

Microbes are known to colonize surfaces and form biofilms. These biofilms are communities of microbes encased in a self-produced matrix that often contains polysaccharides, DNA and proteins. Antimicrobial peptides (AMPs) have been used to control the...

  • Review
  • Open Access
90 Citations
9,218 Views
19 Pages

Interplay between Dietary Polyphenols and Oral and Gut Microbiota in the Development of Colorectal Cancer

  • Carolina Cueva,
  • Mariana Silva,
  • Iris Pinillos,
  • Begoña Bartolomé and
  • M. Victoria Moreno-Arribas

27 February 2020

Colorectal cancer (CRC) is the third most diagnosed type of cancer worldwide. Dietary features play an important role in its development, and the involvement of human microbial communities in this pathology has also recently been recognized. Individu...

  • Article
  • Open Access
7 Citations
3,132 Views
18 Pages

Microbiological Mechanisms of Collaborative Remediation of Cadmium-Contaminated Soil with Bacillus cereus and Lawn Plants

  • Beibei Zhou,
  • Zehao Yang,
  • Xiaopeng Chen,
  • Ruonan Jia,
  • Shaoxiong Yao,
  • Bin Gan,
  • Dongliang Fan,
  • Xie Yang,
  • Wenqian Li and
  • Yunhan Chen

9 May 2024

Severe cadmium contamination poses a serious threat to food security and human health. Plant–microbial combined remediation represents a potential technique for reducing heavy metals in soil. The main objective of this study is to explore the r...

  • Article
  • Open Access
1 Citations
2,940 Views
13 Pages

Metagenome-Based Analysis of the Microbial Community Structure and Drug-Resistance Characteristics of Livestock Feces in Anhui Province, China

  • Ying Shao,
  • Zhao Qi,
  • Jinhui Sang,
  • Zhaorong Yu,
  • Min Li,
  • Zhenyu Wang,
  • Jian Tu,
  • Xiangjun Song and
  • Kezong Qi

12 February 2024

We analyzed metagenome data of feces from sows at different physiological periods reared on large-scale farms in Anhui Province, China, to provide a better understanding of the microbial diversity of the sow intestinal microbiome and the structure of...

  • Perspective
  • Open Access
35 Citations
12,431 Views
13 Pages

5 February 2023

Inflammatory bowel disease (IBD) is a heterogeneous group of diseases associated with chronic inflammation of the intestinal tract, and is highly prevalent worldwide. Although its origin is not yet fully understood, new evidence emphasizes that envir...

  • Review
  • Open Access
23 Citations
13,616 Views
20 Pages

A Review of Bacterial Biofilm Components and Formation, Detection Methods, and Their Prevention and Control on Food Contact Surfaces

  • Amin N. Olaimat,
  • Ahmad Mohammad Ababneh,
  • Murad Al-Holy,
  • Anas Al-Nabulsi,
  • Tareq Osaili,
  • Mahmoud Abughoush,
  • Mutamed Ayyash and
  • Richard A. Holley

28 September 2024

The microbial biofilms are a community of microorganisms that adhere to each other and to surfaces, typically in a mucilaginous or gel-like matrix composed of extracellular polymeric substances, including polysaccharides, proteins, lipids, and DNA. I...

  • Review
  • Open Access
193 Citations
20,709 Views
17 Pages

Biofertilizers and Biocontrol Agents for Agriculture: How to Identify and Develop New Potent Microbial Strains and Traits

  • Anna Maria Pirttilä,
  • Habibollah Mohammad Parast Tabas,
  • Namrata Baruah and
  • Janne J. Koskimäki

Microbiological tools, biofertilizers, and biocontrol agents, which are bacteria and fungi capable of providing beneficial outcomes in crop plant growth and health, have been developed for several decades. Currently we have a selection of strains ava...

  • Review
  • Open Access
24 Citations
4,177 Views
12 Pages

Novel Approach in Biodegradation of Synthetic Thermoplastic Polymers: An Overview

  • Raja Venkatesan,
  • Madhappan Santhamoorthy,
  • Krishnapandi Alagumalai,
  • Rajesh Haldhar,
  • Chaitany Jayprakash Raorane,
  • Vinit Raj and
  • Seong-Cheol Kim

12 October 2022

Biodegradation is necessary for water-soluble or water-immiscible polymers because they eventually enter streams which can neither be recycled nor incinerated. It is important to consider the microbial degradation of natural and synthetic polymers in...

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