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Cells

Cells is an international, peer-reviewed, open access journal on cell biology, molecular biology, and biophysics, published semimonthly online by MDPI.
The Nordic Autophagy Society (NAS) and the Spanish Society of Hematology and Hemotherapy (SEHH) are affiliated with Cells and their members receive discounts on the article processing charges.
Indexed in PubMed | Quartile Ranking JCR - Q2 (Cell Biology)

All Articles (19,858)

Pancreatic Cancer Stem Cells Co-Expressing SOX2, OCT4, and TERThigh Represent an Aggressive Subpopulation

  • Erika Curiel-Gomez,
  • Damaris P. Romero-Rodriguez and
  • Mauricio Rodriguez-Dorantes
  • + 2 authors

The aggressiveness of pancreatic ductal adenocarcinoma (PDAC) has been linked to cancer stem cells (CSCs) and telomerase activity; however, the mechanism underlying this association remains unclear. In this study, we engineered dual transcriptional reporters (SORE6-GFP and TERT-BFP) to isolate SOX2+OCT4+TERThigh subpopulations from AsPC-1 and BxPC-3 cells. We combined Fluorescence-Activated Cell Sorting with functional assays, RNA-seq, and network analysis. Clinically, tumors co-expressing high SOX2/OCT4/TERT levels were associated with reduced overall survival, whereas single-gene elevations were not prognostic. We identified a minority SOX2+OCT4+TERThigh fraction (~9%) enriched for pluripotency transcripts (SOX2, OCT4, NANOG, and ALDH1A1), which exhibited the highest proliferative, migratory, and invasive capacities. Transcriptomic profiling of SOX2+OCT4+TERThigh cells showed enrichment of KRAS, telomere maintenance, epithelial–mesenchymal transition, and developmental pathways (WNT and Hedgehog). Connectivity profiling highlighted actionable vulnerabilities, including NF-κB, WNT, and telomerase inhibition pathways. Together, these data define an aggressive telomerase-engaged, pluripotency-driven CSC-like state in PDAC and suggest testable therapeutic strategies that target TERThigh dependencies.

11 January 2026

Clinical and transcriptomic relevance of SOX2, OCT4, and TERT in pancreatic cancer. (a) Correlation between TERT expression (log2 counts) and stemness index (mRNAsi) across pancreatic tumors (Pearson’s r = 0.438, p = 3.22 × 10−9). (b) Differential expression of SOX2, OCT4, and TERT in the TCGA pan-cancer cohort comparing primary tumors with matched normal tissues (log2 TPM + 1). Data are presented as the mean ± SD *** p < 0.001 Student’s t-test. (c) Expression of SOX2, OCT4, and TERT in pancreatic cancer cell lines AsPC-1 and BxPC-3 from the CCLE database (log2 TPM + 1). (d) Kaplan–Meier overall survival (OS) analysis of patients with PDAC stratified by low (black) versus high (red) expression of SOX2, OCT4, TERT, or the combined SOX2/OCT4/TERT signature. Hazard ratios (HR), 95% confidence intervals (CI), and log-rank p-values are shown. (e) Kaplan–Meier recurrence-free survival (RFS) analysis for the same gene sets as in (d). Hazard ratios (HR), 95% confidence intervals (CIs), log-rank p-values, and numbers at risk are shown in each panel.

MHC Class II and Beyond: Complex Role of CD74 in Cancer

  • Joanna Bandola-Simon and
  • Paul A. Roche

Invariant chain, also known as CD74 when expressed on the plasma membrane, is classically recognized for its role in Major Histocompatibility Complex class II molecule assembly, trafficking, and peptide loading in professional antigen presenting cells. However, recent studies implicate CD74 as a broader regulator of tumor–immune interactions, modulating antigen presentation, cytokine signaling, and immune evasion across diverse cancers. This review synthesizes emerging evidence that CD74 functions as a “master regulator” of antigen presentation in cancer, integrating its canonical chaperone role with its noncanonical role in transcription regulation and in signaling via macrophage migration inhibitory factor. We explore how tumor microenvironmental contexts redefine CD74 biology, influencing antitumor immunity and therapeutic outcomes.

11 January 2026

Multifaceted roles of CD74 in cancer. (a) CD74/Ii chaperones MHC-II molecules from the ER to endo/lysosomal compartments, where Ii is degraded to CLIP, which is then exchanged for antigenic peptides for CD4+ T cell presentation; tumors can suppress this process by increasing CLIP retention; (b) CD74 also functions as a receptor for MIF, forming a complex with CD44 to activate cell survival and proliferation pathways. A soluble form of CD74 can inhibit MIF-CD74 signaling and induce apoptosis. SPPL2a-mediated cleavage releases the CD74 intracellular domain (CD74-ICD), further promoting cell survival signaling. CD74 can also associate with CXCR2/4 to induce migration-related pathways. Created in BioRender. Bandola-Simon, J. (2026) https://BioRender.com/bg3ba5g (accessed on 5 January 2026).

Targeting of Human Mitochondrial DNA with Programmable pAgo Nuclease

  • Beatrisa Rimskaya,
  • Ekaterina Kropocheva and
  • Elza Shchukina
  • + 7 authors

Manipulating the mitochondrial genome remains a significant challenge in genetic engineering, primarily due to the mitochondrial double-membrane structure. While recent advances have expanded the genetic toolkit for nuclear and cytoplasmic targets, precise editing of mitochondrial DNA (mtDNA) has remained elusive. Here we report the first successful mitochondrial import of a catalytically active RNA-guided prokaryotic Argonaute protein from the mesophilic bacterium Alteromonas macleodii (AmAgo). By guiding AmAgo to the single-stranded D- or R-loop region of mtDNA using synthetic RNA guides, we observed a nearly threefold reduction in mtDNA copy number in human cell lines. This proof of concept study demonstrates that a bacterial Argonaute can remain active within the mitochondrial environment and influence mtDNA levels. These findings establish a foundational framework for further development of programmable systems for mitochondrial genome manipulation.

10 January 2026

Analysis of AmAgo colocalization in mitochondria. (A) Schematic representation of expression constructs encoding the prokaryotic Argonaute protein AmAgo under the control of the UbC promoter. In the experimental construct (bottom), AmAgo is fused to the mitochondrial targeting sequence (MTS) Su9 at the N-terminus and tagged with a 3×FLAG epitope. The control construct (top) lacks the MTS. (B) Immunofluorescence analysis of AmAgo localization in human fibroblasts. Fibroblasts were used instead of HEK293T cells to improve visualization of the mitochondrial network. Cells were stained with anti-FLAG antibody (green) to detect AmAgo, MitoTracker CMXRos (red) to label mitochondria, and DAPI (blue) for nuclear staining. In cells expressing MTS-Su9–AmAgo (bottom row), a clear overlap between AmAgo and mitochondria is observed in the merged image. In contrast, cells expressing MTS-lacking AmAgo (top row) show diffuse distribution of the protein throughout the cytoplasm and nucleus. (C) Fluorescence intensity profile analysis along a selected ROI. Normalized fluorescence intensities of AmAgo (green) and mitochondria (MitoTracker, red) were plotted along a yellow line drawn across a representative cell to assess signal colocalization. Pearson’s correlation coefficient calculated from raw fluorescence intensity profiles confirmed strong colocalization (R = 0.94).

Bidens pilosa L., a traditional Chinese medicinal herb, has been used in clinical practice for the treatment of inflammatory diseases and cancer. BPA, an extract derived from the whole herb of B. pilosa L., has been shown to possess potent immunomodulatory properties by regulating tumor-associated macrophages (TAMs) and regulatory T cells (Tregs) within the tumor microenvironment (TME) in a mouse syngeneic colorectal cancer (CRC) model. RT-PCR and flow cytometry analyses showed that BPA, together with its flavonoid and polyacetylene constituents, effectively suppressed the differentiation of M2-TAMs and Tregs by downregulating Arg-1 and CD25 expression. They had minimal effects on the expression of markers associated with M1-TAMs and promoted the proliferation of CD4+ T cells that were inhibited by M2-TAMs and Tregs. In mice, BPA markedly inhibited the growth of syngeneic CRC tumors, accompanied by decreased serum levels of the immunosuppressive cytokine IL-10 and reduced expression of the proliferative marker Ki67 in tumor tissues. Moreover, BPA downregulated the mRNA expression of markers associated with M2-TAMs and Tregs, while increasing markers associated with M1-TAMs. Western blot analyses of tumor tissues revealed that BPA reduced the expression of marker proteins associated with M2-TAMs and Tregs, while increasing the expression of the immune-stimulatory markers CD80, GITR and CD4. In addition, combined treatment with BPA and 5-fluorouracil (5-FU), a commonly used chemotherapeutic agent for CRC, notably enhanced the anti-tumor effect in mice. These findings indicate that BPA, an active extract of B. pilosa L., showed antitumor activity in mice by suppressing the differentiation of pro-tumorigenic TAMs and Tregs within the TME.

10 January 2026

Extraction, HPLC analysis, and structural characterization of BPA and its main constituents. (A) Extraction and isolation process of BPA. (B) HPLC trace of BPA. HPLC analysis of BPA was performed using an Agilent 1260 Infinity II HPLC system with an Agilent XDB-C18 chromatographic column (dimensions: 4.6 × 250 mm, particle size: 5 μm) under gradient elution conditions with methanol. The specific methanol gradient profile was: 0–5 min, 10–20%; 5–15 min, 20–30%; 15–20 min, 30–35%; 20–30 min, 35–40%; 30–60 min, 40–45%; 60–70 min, 45–50%; 70–75 min and 50–55%. The effluents were monitored at 254 nm with the column maintained at 30 °C and a flow rate of 1.0 mL/min. (C) Chemical structures of compounds 1–8, the major constituents of BPA.

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Cells - ISSN 2073-4409