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Cells

Cells is an international, peer-reviewed, open access journal on cell biology, molecular biology, and biophysics, published semimonthly online by MDPI.
The Nordic Autophagy Society (NAS) and the Spanish Society of Hematology and Hemotherapy (SEHH) are affiliated with Cells and their members receive discounts on the article processing charges.
Indexed in PubMed | Quartile Ranking JCR - Q2 (Cell Biology)

All Articles (19,948)

Lower-Limb Muscle Impairments in Patients with COPD: An Overview of the Past Decade

  • Bente Brauwers,
  • Martijn A. Spruit and
  • Felipe V. C. Machado
  • + 2 authors

Chronic obstructive pulmonary disease (COPD) is a chronic respiratory disease characterized by airflow limitation. Apart from airflow limitation, patients with COPD may also suffer from extra-pulmonary features such as lower limb muscle dysfunction that contribute to an impaired health status. Since the latest statement on lower-limb muscle dysfunction in COPD in 2014, substantial new evidence has emerged with regard to molecular, cellular, and functional mechanisms underlying muscle plasticity. Therefore, this review aims to provide an updated overview of molecular, cellular, and functional mechanisms of lower-limb muscle plasticity in COPD, integrating evidence that has emerged since the 2014 statement on lower limb muscle dysfunction. Additionally, the effects of exercise training on mechanisms of limb muscle dysfunction are explained. From the evidence of the last decade, it can be concluded that limb muscle dysfunction is a multifactorial process driven by both intrinsic alterations and impairments to the muscle as well as extra-pulmonary influences, thereby reinforcing the need for integrated therapeutic strategies.

23 January 2026

Overview of key cellular mechanisms leading to limb skeletal muscle dysfunction in COPD.

Reduced LOXL3 Expression Disrupts Microtubule Acetylation and Drives TP53-Dependent Cell Fate in Glioblastoma

  • Talita de Sousa Laurentino,
  • Roseli da Silva Soares and
  • Sueli Mieko Oba-Shinjo
  • + 3 authors

Glioblastoma (GBM) is the most aggressive primary brain tumor, marked by molecular heterogeneity and poor clinical prognosis. Lysyl oxidase-like 3 (LOXL3) is frequently upregulated in GBM, but its mechanistic contribution remains insufficiently defined. Here, we investigated the functional role of LOXL3 in GBM using CRISPR-Cas9-mediated LOXL3 knockdown in two genetically distinct GBM cell lines: U87MG (wild-type TP53) and U251 (mutant TP53). Reduced LOXL3 expression markedly reduced α-tubulin acetylation, particularly in U87MG cells, and downregulated genes involved in cell cycle progression and proliferation. Both cell lines exhibited mitotic defects, including delayed cell cycle progression and spindle abnormalities; however, cell fate diverged according to TP53 status. U87MG cells, sustained spindle checkpoint activation triggered a p53-dependent spindle checkpoint response culminating in apoptosis, while U251 cells underwent mitotic slippage and senescence. Transcriptomic analyses confirmed differential regulation of apoptosis versus senescence pathways in accordance with TP53 functionality. Additionally, reduced LOXL3 expression markedly impaired adhesion and migration in U87MG cells, whereas U251 cells were minimally affected, consistent with more pronounced microtubule destabilization. Collectively, these findings identify that LOXL3 is a key regulator of microtubule homeostasis, mitotic fidelity, adhesion, and invasive behavior in GBM. Targeting LOXL3 may therefore provide a therapeutic opportunity for genotype-informed intervention in GBM.

23 January 2026

CRISPR-Cas9-mediated LOXL3 reduction in U87MG and U251 cell lines: (A) Schematic representation of the LOXL3 silencing strategy using CRISPR-Cas9 with two unique single guide RNAs (sgRNAs). (B) Western blot of LOXL3 protein levels in EV controls and LOXL3 partial knockout clones (clones 1 and 2). β-actin served as a protein loading control. LOXL3: 83 kDa; β-actin: 42 kDa. (C) Quantification of LOXL3 expression normalized to β-actin and EV controls in U87MG and U251 cells. Results are expressed as percentages relative to the EV controls (mean ± SD). (D) Representative phase-contrast images showing the morphological characteristics of EV controls and LOXL3-KD clones. (E,F) Cell viability of EV controls and LOXL3-KD clones in U87MG and U251 cells, respectively, measured over time. Data are presented as mean ± SD. Statistical significances of clones 1 and 2 versus EV controls at each time point: ## p ≤ 0.01, ### p ≤ 0.001, **** or #### p ≤ 0.0001. (G–J) RNA-seq analysis of LOXL3 partial knockout U87MG and U251 cells compared with EV controls. Top five enriched Gene Ontology biological processes for downregulated (G,H) and upregulated (I,J) genes in U87MG and U251 cells, respectively. EV, empty vector; SD, standard deviation.

Abdominal aortic aneurysm (AAA) is a serious disease with no effective pharmacological therapy. Although inflammation is recognized as a key regulator of AAA, targeting inflammatory pathways once the disease is established does not improve outcomes. Understanding the earliest molecular indicators could clarify precise biological targets and prognostic markers for AAA. Using ApoE-deficient mice, we performed RNA-Seq on suprarenal abdominal aortas (SRAs) from Ang II- and saline-treated mice 24 h after infusion. We further developed a unique model of hyperlipidemic mice in which the expression of the inhibitor of nuclear factor kappa B kinase subunit beta (IKKβ) can be conditionally suppressed in vascular smooth muscle cells (VSMCs). RNA-Seq data revealed early IKKβ-dependent cellular anabolic processes in SRAs, including activation of the mammalian target of rapamycin complex 1 (mTORC1) pathway. Furthermore, deletion of the Ikbkb gene in VSMCs significantly reduced the rate of aneurysm rupture in mice exposed to Ang II. In situ analysis further confirmed that the absence of IKKβ in VSMCs is associated with a reduced inflammatory response and the preservation of their contractile phenotypes. Our results reinforce the crucial role of VSMCs in rapid adaptation, leading to deleterious inflammation-dependent remodeling of the vascular wall, and define a previously unrecognized anabolic role of IKKβ in AAA pathogenesis.

23 January 2026

Early anabolic response defines the molecular signature of aortopathy in the Ang II-infused ApoE-deficient mouse-AAA model. (A) Volcano plot of differentially expressed transcripts (DET) in SRAs after 24 h of Ang II treatment. Each point shows the average fold change and associated p-adjusted value for a single transcript, comparing Ang II (n = 5 mice) with saline (n = 5 mice). Colored numbers indicate the number of significantly induced (red) and reduced (blue) transcripts at the given threshold (dotted lines), as indicated in Materials and methods. (B) Heatmap of significant DET. Expression fold changes have been transformed to z-scores, and clustering has been performed on rows (mice) and columns (transcripts). (C) Functional classification of significant upregulated DET with Metascape for the Gene Ontology: Biological Processes collection of gene sets. Green bars indicate p-values (−Log10), and dots indicate the number of genes per pathway. (D) Functional classification as in C, but for KEGG pathways, using an enrichment bubble plot. The X-axis represents the enrichment factor (number of genes/all genes from pathway), XgeneInGO indicates the number of genes (bubble size), and −LogP indicates significance based on the p-value. (E) Gene set enrichment analyses (GSEAs) on all normalized transcripts in control (saline) and Ang II-treated mice. NES: Normalized enrichment score; NOM p: nominal p-value; FDR q: false discovery rate-adjusted q-value. (F) Over-representation of TFBS in the promoter (−950 to +50) of significantly induced DET in Ang II-treated versus saline-treated mice. Red dots indicate significant over-representation with a p-value < 0.05. Labeled dots also have a black outline.

Human Liver Organoids as an Experimental Tool to Investigate Lipocalin-2 in Hepatic Inflammation

  • Katharina S. Hardt,
  • Robert F. Pohlberger and
  • Sarah K. Schröder-Lange
  • + 5 authors

The 25 kDa glycoprotein lipocalin-2 (LCN2) is widely expressed and has diverse functions, ranging from physiological to pathophysiological processes. In the liver, LCN2 is primarily associated with inflammatory processes and is considered a potential biomarker in metabolic disorders. However, a significant challenge is the absence of a suitable human in vitro model for studying LCN2 and its associated signaling pathways. Therefore, we have successfully generated patient-derived liver organoids of both male and female origin, providing a novel in vitro model for LCN2 research. Our data show that the self-renewing organoids mimic essential architectural features of hepatocytes, as demonstrated by electron microscopy and F-actin staining. Consistent with the expression profile observed in liver tissue, the isolated 3D organoids exhibit minimal endogenous LCN2 levels. Next, the LCN2 expression was studied at the protein and mRNA levels under inflammatory conditions by treating the organoids with various cytokines and lipopolysaccharides (LPS). Our results show that LCN2 expression is significantly upregulated by IL-1β and TNF-α in an NF-κB-dependent manner, but remains unchanged with IL-6 or LPS. In conclusion, we have established human patient-derived liver organoids as a valuable model for investigating LCN2 signaling mechanisms. This study lays the foundation for future research on the role of LCN2 in liver pathologies, aiding in disease progression understanding and facilitating patient-specific treatment predictions.

23 January 2026

Isolation and subcultivation of patient-derived liver organoids. Isolation and subcultivation of organoids was conducted following the method outlined by Broutier et al. [14]. During the isolation process, liver biopsies were obtained during a surgical procedure. The tissues were then digested into single cells through homogenization and enzymatic digestion. These single cells were then embedded into an extracellular matrix (ECM) and cultivated in organoid initiation medium. Subsequently, for the subcultivation of the organoids, ECM was detached, and the organoids were mechanically divided into fragments. These fragments were then re-embedded into the ECM and cultured in organoid growth media.

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Cells - ISSN 2073-4409