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301 Results Found

  • Article
  • Open Access
13 Citations
4,580 Views
22 Pages

Scientific reproducibility is essential for the advancement of science. It allows the results of previous studies to be reproduced, validates their conclusions and develops new contributions based on previous research. Nowadays, more and more authors...

  • Article
  • Open Access
5 Citations
4,714 Views
10 Pages

Reproducibility: A Researcher-Centered Definition

  • Sebastian Stefan Feger and
  • Paweł W. Woźniak

Recent years have introduced major shifts in scientific reporting and publishing. The scientific community, publishers, funding agencies, and the public expect research to adhere to principles of openness, reproducibility, replicability, and repeatab...

  • Article
  • Open Access
4 Citations
3,132 Views
13 Pages

Approaching Software Engineering for Marine Sciences: A Single Development Process for Multiple End-User Applications

  • Pedro Magaña,
  • Juan Del-Rosal-Salido,
  • Manuel Cobos,
  • Andrea Lira-Loarca and
  • Miguel Ortega-Sánchez

Research software is currently used by a large number of scientists on a daily basis, and everything indicates that this trend will continue to increase in the future. Most of this scientific software is very often developed by the researchers themse...

  • Article
  • Open Access
3 Citations
4,541 Views
15 Pages

Co-Clinical Imaging Metadata Information (CIMI) for Cancer Research to Promote Open Science, Standardization, and Reproducibility in Preclinical Imaging

  • Stephen M. Moore,
  • James D. Quirk,
  • Andrew W. Lassiter,
  • Richard Laforest,
  • Gregory D. Ayers,
  • Cristian T. Badea,
  • Andriy Y. Fedorov,
  • Paul E. Kinahan,
  • Matthew Holbrook and
  • Peder E. Z. Larson
  • + 17 authors

11 May 2023

Preclinical imaging is a critical component in translational research with significant complexities in workflow and site differences in deployment. Importantly, the National Cancer Institute’s (NCI) precision medicine initiative emphasizes the...

  • Article
  • Open Access
18 Citations
12,471 Views
15 Pages

Integrating Free and Open Source Solutions into Geospatial Science Education

  • Vaclav Petras,
  • Anna Petrasova,
  • Brendan Harmon,
  • Ross K. Meentemeyer and
  • Helena Mitasova

While free and open source software becomes increasingly important in geospatial research and industry, open science perspectives are generally less reflected in universities’ educational programs. We present an example of how free and open source so...

  • Article
  • Open Access
1 Citations
446 Views
18 Pages

Citizen Science and STEM Education with R: AI–IoT Forecasting and Reproducible Learning from Open Urban Air Quality Data

  • Jesús Cáceres-Tello,
  • José Javier Galán-Hernández,
  • María Belén Morales Cevallo and
  • Eloy López-Meneses

17 November 2025

Open urban environmental data offer a unique opportunity to connect scientific research, education, and citizen participation. Leveraging IoT-based sensor networks and AI-driven forecasting models, this study integrates open environmental data with r...

  • Article
  • Open Access
19 Citations
11,180 Views
10 Pages

Stepping up Open Science Training for European Research

  • Birgit Schmidt,
  • Astrid Orth,
  • Gwen Franck,
  • Iryna Kuchma,
  • Petr Knoth and
  • José Carvalho

Open science refers to all things open in research and scholarly communication: from publications and research data to code, models and methods as well as quality evaluation based on open peer review. However, getting started with implementing open s...

  • Article
  • Open Access
1 Citations
3,346 Views
21 Pages

5 October 2022

Most research projects are data driven. However, many organizations lack proper information systems (IS) for managing data, that is, planning, collecting, analyzing, storing, archiving, and sharing for use and re-use. Many research institutions have...

  • Abstract
  • Open Access
1,239 Views
2 Pages

Background and objectives: Journal articles describing randomised controlled trials (RCTs) are not optimally reported, often missing crucial details that ensure transparency and reproducibility. We aimed to estimate the frequency of reproducible and...

  • Article
  • Open Access
3,271 Views
15 Pages

Fostering Open Data Practices in Research-Performing Organizations

  • Claire Jean-Quartier,
  • Harald Kleinberger-Pierer,
  • Barbara Zach,
  • Ilire Hasani-Mavriqi,
  • Lea Pešec and
  • Clara Schmikl-Reiter

Open data provide the scientific community and other stakeholders with unrestricted access to data. Open data serve as a foundation for reproducing research findings, while also facilitating collaboration and enabling novel discoveries. However, open...

  • Opinion
  • Open Access
11 Citations
12,792 Views
8 Pages

Predatory journals often prey on innocent researchers who are unaware of the threat they pose. This paper discusses what researchers can do if they unintentionally publish a paper in a predatory journal, including measures to take before submission,...

  • Systematic Review
  • Open Access
509 Views
38 Pages

Reproducible GIS-Based Evidence for Public Health and Urban Security: A Systematic Mapping and Review

  • Washington Ramírez Montalvan,
  • Ibeth Manzano Gallardo,
  • Verónica Defaz Toapanta,
  • Edison Espinosa Gallardo and
  • Lucas Garcés Guayta

Geographic Information Systems (GIS) are increasingly applied to public health and urban security challenges, yet current evidence remains fragmented across methods, disciplines, and regions. This study integrates Systematic Mapping (SM) and Systemat...

  • Review
  • Open Access
80 Citations
22,813 Views
55 Pages

The metaRbolomics Toolbox in Bioconductor and beyond

  • Jan Stanstrup,
  • Corey D. Broeckling,
  • Rick Helmus,
  • Nils Hoffmann,
  • Ewy Mathé,
  • Thomas Naake,
  • Luca Nicolotti,
  • Kristian Peters,
  • Johannes Rainer and
  • Reza M. Salek
  • + 9 authors

23 September 2019

Metabolomics aims to measure and characterise the complex composition of metabolites in a biological system. Metabolomics studies involve sophisticated analytical techniques such as mass spectrometry and nuclear magnetic resonance spectroscopy, and g...

  • Article
  • Open Access
7 Citations
4,357 Views
39 Pages

30 January 2022

Despite the great attention that the research community has paid to the creation of novel indoor positioning methods, a rather limited volume of works has focused on the confidence that Indoor Positioning Systems (IPS) assign to the position estimate...

  • Article
  • Open Access
107 Citations
28,312 Views
9 Pages

Open-Source Colorimeter

  • Gerald C. Anzalone,
  • Alexandra G. Glover and
  • Joshua M. Pearce

19 April 2013

The high cost of what have historically been sophisticated research-related sensors and tools has limited their adoption to a relatively small group of well-funded researchers. This paper provides a methodology for applying an open-source approach to...

  • Review
  • Open Access
33 Citations
14,811 Views
12 Pages

In the tenth year since the first edition of MISEV was released in 2014, MISEV2023 has been reported in 2024 with the aim of refining the standard and improving the rigor, reproducibility, and transparency of extracellular vesicle (EV) research to cl...

  • Article
  • Open Access
2 Citations
4,033 Views
29 Pages

Identifying Urban and Socio-Environmental Patterns of Brazilian Amazonian Cities by Remote Sensing and Machine Learning

  • Bruno Dias dos Santos,
  • Carolina Moutinho Duque de Pinho,
  • Antonio Páez and
  • Silvana Amaral

14 June 2023

Identifying urban patterns in the cities in the Brazilian Amazon can help to understand the impact of human actions on the environment, to protect local cultures, and secure the cultural heritage of the region. The objective of this study is to produ...

  • Article
  • Open Access
1,324 Views
33 Pages

Modern approaches to research assessment often treat two independent dimensions: the degree of readiness (the progress of scientific maturity) and the Added Scientific Value (novelty, rigor, reproducibility, and societal significance). The present st...

  • Article
  • Open Access
1 Citations
1,089 Views
21 Pages

17 September 2025

The operation of microgravity research missions, such as sounding rockets, CubeSats, and small landers, typically relies on proprietary mission control infrastructures, which limit reproducibility, portability, and interdisciplinary use. In this work...

  • Review
  • Open Access
3,599 Views
45 Pages

21 November 2025

This review uniquely integrates open access dataset taxonomy with methodological trends in stress analysis, outlining the experimental framework and highlighting key gaps in reproducibility and FAIR compliance. In this context, stress induction metho...

  • Article
  • Open Access
1,055 Views
13 Pages

Scalable Model-Based Diagnosis with FastDiag: A Dataset and Parallel Benchmark Framework

  • Delia Isabel Carrión León,
  • Cristian Vidal-Silva and
  • Nicolás Márquez

3 September 2025

FastDiag is a widely used algorithm for model-based diagnosis, computing minimal subsets of constraints whose removal restores consistency in knowledge-based systems. As applications grow in complexity, researchers have proposed parallel extensions s...

  • Feature Paper
  • Article
  • Open Access
48 Citations
7,357 Views
13 Pages

Nonlinear Dynamic Analysis of Seismically Base-Isolated Structures by a Novel OpenSees Hysteretic Material Model

  • Nicoló Vaiana,
  • Raffaele Capuano,
  • Salvatore Sessa,
  • Francesco Marmo and
  • Luciano Rosati

20 January 2021

The complex response characterizing elastomeric isolation bearings is reproduced by employing a novel uniaxial hysteretic model that has been recently formulated and successfully implemented in OpenSees. Such a novel OpenSees material model offers se...

  • Article
  • Open Access
4 Citations
11,989 Views
11 Pages

Detection of the Deformation of an Intelligent Textile in a Specific Point

  • Maria Alsina,
  • Francesc Escudero,
  • Jordi Margalef,
  • Vicente Cambra and
  • José Gisbert

13 June 2007

An intelligent textile is a textile structure that measures and reacts in front of external agents or stimulus with or without integrated electronic equipment. . The finality of the present textile is to take one more step towards intelligent textile...

  • Article
  • Open Access
2 Citations
6,957 Views
18 Pages

Open-Source Script for Design and 3D Printing of Porous Structures for Soil Science

  • Romain Bedell,
  • Alaa Hassan,
  • Anne-Julie Tinet,
  • Javier Arrieta-Escobar,
  • Delphine Derrien,
  • Marie-France Dignac,
  • Vincent Boly,
  • Stéphanie Ouvrard and
  • Joshua M. Pearce

Three-dimensional (3D) printing in soil science is relatively rare but offers promising directions for research. Having 3D-printed soil samples will help academics and researchers conduct experiments in a reproducible and participatory research netwo...

  • Brief Report
  • Open Access
14 Citations
1,530 Views
4 Pages

28 June 2019

Ultrasonography (USG) is a cost-effective and noninvasive imaging modality commonly employed for imaging the abdominal region and extremities. Currently, with the availability of higher frequency probes and higher resolution devices, USG imaging of t...

  • Systematic Review
  • Open Access
22 Citations
6,483 Views
30 Pages

Machine Learning Applied to the Detection of Mycotoxin in Food: A Systematic Review

  • Alan Inglis,
  • Andrew C. Parnell,
  • Natarajan Subramani and
  • Fiona M. Doohan

12 June 2024

Mycotoxins, toxic secondary metabolites produced by certain fungi, pose significant threats to global food safety and public health. These compounds can contaminate a variety of crops, leading to economic losses and health risks to both humans and an...

  • Article
  • Open Access
15 Citations
5,280 Views
12 Pages

The Integrated System of Hydrological Forecasting in the Ussuri River Basin Based on the ECOMAG Model

  • Andrei Bugaets,
  • Boris Gartsman,
  • Alexander Gelfan,
  • Yury Motovilov,
  • Oleg Sokolov,
  • Leonid Gonchukov,
  • Andrei Kalugin,
  • Vsevolod Moreido,
  • Zoya Suchilina and
  • Evgeniya Fingert

This paper considers the main principles and technologies used in developing the operational modeling system for the Ussuri River Basin of 24,400 km2 based on the automated system of hydrological monitoring and data management (ASHM), the physical-ma...

  • Article
  • Open Access
7 Citations
3,950 Views
33 Pages

MagnetoShield: A Novel Open-Source Magnetic Levitation Benchmark Device for Mechatronics Education and Research

  • Gergely Takács,
  • Jakub Mihalík,
  • Martin Gulan,
  • Anna Vargová,
  • Erik Mikuláš and
  • Štepán Ožana

15 January 2024

This article presents an open-source device illustrating the well-known magnetic levitation experiment. The uniqueness of this particular device lies in its exceptionally small dimensions, affordability and availability, which makes it a perfect desi...

  • Review
  • Open Access
56 Citations
11,814 Views
29 Pages

Biomaterials for Three-Dimensional Cell Culture: From Applications in Oncology to Nanotechnology

  • Tarek Saydé,
  • Omar El Hamoui,
  • Bruno Alies,
  • Karen Gaudin,
  • Gaëtane Lespes and
  • Serge Battu

13 February 2021

Three-dimensional cell culture has revolutionized cellular biology research and opened the door to novel discoveries in terms of cellular behavior and response to microenvironment stimuli. Different types of 3D culture exist today, including hydrogel...

  • Article
  • Open Access
12 Citations
4,594 Views
17 Pages

30 June 2020

The capability of two different OpenFOAM® solvers, namely interFoam and twoPhaseEulerFoam, in reproducing the behavior of a free water jet was investigated. Numerical simulations were performed in order to obtain the velocity and air concentratio...

  • Feature Paper
  • Article
  • Open Access
18 Citations
6,328 Views
17 Pages

Recent Advances in the Processing and Rendering Algorithms for Computer-Generated Holography

  • Roberto Corda,
  • Daniele Giusto,
  • Antonio Liotta,
  • Wei Song and
  • Cristian Perra

Digital holography represents a novel media which promises to revolutionize the way the users interacts with content. This paper presents an in-depth review of the state-of-the-art algorithms for advanced processing and rendering of computer-generate...

  • Article
  • Open Access
12 Citations
7,476 Views
16 Pages

4 July 2012

Hydrogen desorption from hydride matrix is still an open field of research. By means of accurate first-principle molecular dynamics (MD) simulations an Mg–MgH2 interface is selected, studied and characterized. Electronic structure calculations are us...

  • Communication
  • Open Access
4 Citations
5,245 Views
15 Pages

CyVerse Austria—A Local, Collaborative Cyberinfrastructure

  • Konrad Lang,
  • Sarah Stryeck,
  • David Bodruzic,
  • Manfred Stepponat,
  • Slave Trajanoski,
  • Ursula Winkler and
  • Stefanie Lindstaedt

Life sciences (LS) are advanced in research data management, since LS have established disciplinary tools for data archiving as well as metadata standards for data reuse. However, there is a lack of tools supporting the active research process in ter...

  • Communication
  • Open Access
6 Citations
4,102 Views
11 Pages

20 November 2021

Recent advances in sensor technology and the availability of low-cost and low-power sensors have changed the air quality monitoring paradigm. These sensors are being widely used by scientists and citizens for monitoring air quality at finer spatial-t...

  • Article
  • Open Access
464 Views
27 Pages

15 December 2025

Astronomy provides an exceptional context for developing data literacy, critical thinking, and computational skills in education. This paper presents a project-based learning (PBL) framework that integrates exploratory data analysis (EDA), fuzzy logi...

  • Article
  • Open Access
171 Views
21 Pages

4 January 2026

Educational Data Mining (EDM) increasingly depends on large, high-quality datasets to drive predictive and adaptive learning systems. However, data scarcity, privacy restrictions, and limited accessibility severely hinder research reproducibility and...

  • Article
  • Open Access
18 Citations
6,694 Views
22 Pages

A Low-Cost Smart Sensor Network for Catchment Monitoring

  • Dian Zhang,
  • Brendan Heery,
  • Maria O’Neil,
  • Suzanne Little,
  • Noel E. O’Connor and
  • Fiona Regan

17 May 2019

Understanding hydrological processes in large, open areas, such as catchments, and further modelling these processes are still open research questions. The system proposed in this work provides an automatic end-to-end pipeline from data collection to...

  • Technical Note
  • Open Access
729 Views
23 Pages

28 November 2025

This paper introduces SmartBuildSim, an open-source synthetic-twin framework that generates configurable and reproducible multi-sensor building streams using lightweight statistical models with tunable trend, seasonality, correlation, delays, and ano...

  • Article
  • Open Access
304 Citations
23,001 Views
22 Pages

3D Printability of Alginate-Carboxymethyl Cellulose Hydrogel

  • Ahasan Habib,
  • Venkatachalem Sathish,
  • Sanku Mallik and
  • Bashir Khoda

20 March 2018

Three-dimensional (3D) bio-printing is a revolutionary technology to reproduce a 3D functional living tissue scaffold in-vitro through controlled layer-by-layer deposition of biomaterials along with high precision positioning of cells. Due to its bio...

  • Article
  • Open Access
128 Views
21 Pages

6 January 2026

Household adoption of residential photovoltaic systems in community microgrids is shaped by economic, infrastructural, and social factors. Previous studies have shown that agent-based modelling can help analyse adoption, but it often lacks clear math...

  • Article
  • Open Access
10 Citations
7,397 Views
9 Pages

A Nanostructured SERS Switch Based on Molecular Beacon-Controlled Assembly of Gold Nanoparticles

  • Yansheng Li,
  • Yaya Cheng,
  • Liping Xu,
  • Hongwu Du,
  • Peixun Zhang,
  • Yongqiang Wen and
  • Xueji Zhang

22 January 2016

In this paper, highly purified and stable gold nanoparticle (AuNP) dimers connected at the two ends of DNA linkage were prepared by a versatile method. A nanostructured, surface-enhanced Raman scattering (SERS) switching sensor system was fabricated...

  • Article
  • Open Access
1,753 Views
26 Pages

The Social–Environmental System (SES) framework is crucial in understanding the intricate interplay between human societies and their environmental contexts. Despite its significance, existing SES delineation methods often rely on subjective ju...

  • Review
  • Open Access
16 Citations
7,399 Views
14 Pages

28 June 2020

R is an open-source programming language which gained a central place in the geosciences over the last two decades as the primary tool for research. Now, biometeorological research is driven by the diverse datasets related to the atmosphere and other...

  • Article
  • Open Access
78 Citations
18,992 Views
27 Pages

6 November 2016

Surface science, which includes the preparation, development and analysis of surfaces and coatings, is essential in both fundamental and applied as well as in engineering and industrial research. Contact angle measurements using sessile drop techniqu...

  • Article
  • Open Access
4 Citations
1,747 Views
21 Pages

Strategies for Glacier Retreat Communication with 3D Geovisualization and Open Data Sharing

  • Federica Gaspari,
  • Federico Barbieri,
  • Rebecca Fascia,
  • Francesco Ioli,
  • Livio Pinto and
  • Federica Migliaccio

Images of melting ice have become powerful symbols of climate change, attracting both public attention and scientific interest. This research uses web technologies to document and communicate the ongoing retreat of the Belvedere Glacier in the Italia...

  • Article
  • Open Access
53 Citations
22,808 Views
27 Pages

22 October 2015

Processing is an object-oriented Python framework for the popular open source Geographic Information System QGIS, which provides a seamless integration of geoprocessing tools from a variety of different software libraries. In this paper, we present t...

  • Article
  • Open Access
6 Citations
3,477 Views
25 Pages

The accurate generation of a target sea state in numerical or experimental wave tanks is a fundamental line of research for the ocean engineering community. It guarantees the quality and relevance of wave–structure interaction tests. This study...

  • Article
  • Open Access
2,402 Views
27 Pages

Beacon, a Lightweight Deep Reinforcement Learning Benchmark Library for Flow Control

  • Jonathan Viquerat,
  • Philippe Meliga,
  • Pablo Jeken-Rico and
  • Elie Hachem

23 April 2024

Recently, the increasing use of deep reinforcement learning for flow control problems has led to a new area of research focused on the coupling and adaptation of the existing algorithms to the control of numerical fluid dynamics environments. Althoug...

  • Article
  • Open Access
14 Citations
3,442 Views
13 Pages

Challenges in Lipidomics Biomarker Identification: Avoiding the Pitfalls and Improving Reproducibility

  • Johanna von Gerichten,
  • Kyle Saunders,
  • Melanie J. Bailey,
  • Lee A. Gethings,
  • Anthony Onoja,
  • Nophar Geifman and
  • Matt Spick

19 August 2024

Identification of features with high levels of confidence in liquid chromatography–mass spectrometry (LC–MS) lipidomics research is an essential part of biomarker discovery, but existing software platforms can give inconsistent results, e...

  • Article
  • Open Access
137 Citations
8,751 Views
10 Pages

Quasar: Easy Machine Learning for Biospectroscopy

  • Marko Toplak,
  • Stuart T. Read,
  • Christophe Sandt and
  • Ferenc Borondics

3 September 2021

Data volumes collected in many scientific fields have long exceeded the capacity of human comprehension. This is especially true in biomedical research where multiple replicates and techniques are required to conduct reliable studies. Ever-increasing...

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