Journal Description
Tomography
Tomography
is an international, peer-reviewed open access journal on imaging technologies published monthly online by MDPI (from Volume 7 Issue 1-2021).
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, MEDLINE, PMC, and other databases.
- Journal Rank: JCR - Q2 (Radiology, Nuclear Medicine and Medical lmaging)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 23.8 days after submission; acceptance to publication is undertaken in 3.3 days (median values for papers published in this journal in the second half of 2024).
- Recognition of Reviewers: APC discount vouchers, optional signed peer review, and reviewer names published annually in the journal.
Impact Factor:
2.2 (2023);
5-Year Impact Factor:
2.3 (2023)
Latest Articles
CT Angiography Assessment of Dorsal Pancreatic Artery and Intrapancreatic Arcade Anatomy: Impact on Whipple Surgery Outcomes
Tomography 2025, 11(1), 9; https://doi.org/10.3390/tomography11010009 - 14 Jan 2025
Abstract
Background/Objectives: The aim was to investigate the association between variations in the dorsal pancreatic artery (DPA) and intrapancreatic arcade anatomy with Whipple procedure outcomes and postoperative complications. Methods: This retrospective study was conducted with 362 patients who underwent a Whipple procedure at the
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Background/Objectives: The aim was to investigate the association between variations in the dorsal pancreatic artery (DPA) and intrapancreatic arcade anatomy with Whipple procedure outcomes and postoperative complications. Methods: This retrospective study was conducted with 362 patients who underwent a Whipple procedure at the Department of Gastroenterological Surgery of Adana City Training and Research Hospital between January 2018 and April 2024. All data collected from medical records were compared and statistically analyzed according to the patients’ survival status and arcade subtypes. Results: After excluding cases that did not meet the study criteria, a total of 284 patients were included in the study. DPA was visualized in 55.98% (159/284) of patients, while the intrapancreatic arcade was observed in 25% (71/284). The most common origin of the DPA was the splenic artery in 69.2% (n = 110) of patients, followed by the superior mesenteric artery in 17.6% (n = 28). The frequency of intrapancreatic arcade anatomy variations was as follows: type 1: 28.2% (n = 20), type 2: 49.3% (n = 35) and type 3: 22.5% (n = 16). Arcade type 4 anatomy was not detected. Postoperative pancreatic fistula (POPF) complication was found to be statistically significantly higher in patients with type 3 anatomy (p = 0.042). The 90-day mortality and long-term mortality rates did not differ among the groups based on the variations in both DPA and intrapancreatic arcade anatomy types. Conclusions: Patients with intrapancreatic arcade type 3 anatomy had a higher risk of POPF complications. Determination of preoperative arcade type by computed tomography (CT) angiography may help to predict the risk of POPF.
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(This article belongs to the Section Abdominal Imaging)
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Comparative Sensitivity of MRI Indices for Myelin Assessment in Spinal Cord Regions
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Philip Kyeremeh Jnr Oppong, Hiroyuki Hamaguchi, Maho Kitagawa, Nina Patzke, Kevin C. Wakeman and Khin Khin Tha
Tomography 2025, 11(1), 8; https://doi.org/10.3390/tomography11010008 - 14 Jan 2025
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Background/Objectives: Although multiple magnetic resonance imaging (MRI) indices are known to be sensitive to the noninvasive assessment of myelin integrity, their relative sensitivities have not been directly compared. This study aimed to identify the most sensitive MRI index for characterizing myelin composition in
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Background/Objectives: Although multiple magnetic resonance imaging (MRI) indices are known to be sensitive to the noninvasive assessment of myelin integrity, their relative sensitivities have not been directly compared. This study aimed to identify the most sensitive MRI index for characterizing myelin composition in the spinal cord’s gray matter (GM) and white matter (WM). Methods: MRI was performed on a deer’s ex vivo cervical spinal cord. Quantitative indices known to be sensitive to myelin, including the myelin water fraction (MWF), magnetization transfer ratio (MTR), the signal ratio between T1- and T2-weighted images (T1W/T2W), fractional anisotropy (FA), mean diffusivity (MD), electrical conductivity (σ), and T1, T2, and T1ρ relaxation times were calculated. Their mean values were compared using repeated measures analysis of variance (ANOVA) and post hoc Bonferroni tests or Friedman and post hoc Wilcoxon tests to identify differences across GM and WM columns possessing distinct myelin distributions, as revealed by histological analysis. Relationships among the indices were examined using Spearman’s rank-order correlation analysis. Corrected p < 0.05 was considered statistically significant. Results: All indices except σ differed significantly between GM and all WM columns. Two of the three WM columns had significantly different MWF, FA, MD, and T2, whereas one WM column had significantly different MTR, σ, T1, and T1ρ from the others. A significant moderate to very strong correlation was observed among most indices. Conclusions: The sensitivity of MRI indices in distinguishing spinal cord regions varied. A strategic combination of two or more indices may allow the accurate differentiation of spinal cord regions.
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Open AccessArticle
Fast Hadamard-Encoded 7T Spectroscopic Imaging of Human Brain
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Chan Hong Moon, Frank S. Lieberman, Hoby P. Hetherington and Jullie W. Pan
Tomography 2025, 11(1), 7; https://doi.org/10.3390/tomography11010007 - 13 Jan 2025
Abstract
Background/Objectives: The increased SNR available at 7T combined with fast readout trajectories enables accelerated spectroscopic imaging acquisitions for clinical applications. In this report, we evaluate the performance of a Hadamard slice encoding strategy with a 2D rosette trajectory for multi-slice fast spectroscopic
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Background/Objectives: The increased SNR available at 7T combined with fast readout trajectories enables accelerated spectroscopic imaging acquisitions for clinical applications. In this report, we evaluate the performance of a Hadamard slice encoding strategy with a 2D rosette trajectory for multi-slice fast spectroscopic imaging at 7T. Methods: Moderate-TE (~40 ms) spin echo and J-refocused polarization transfer sequences were acquired with simultaneous Hadamard multi-slice excitations and rosette in-plane encoding. The moderate spin echo sequence, which targets singlet compounds (i.e., N-acetyl aspartate, creatine, and choline), uses cascaded multi-slice RF excitation pulses to minimize the chemical shift dispersion error. The J-refocused sequence targets coupled spin systems (i.e., glutamate and myo-inositol) using simultaneous multi-slice excitation to maintain the same TE across all slices. A modified Hadamard slice encoding strategy was used to decrease the peak RF pulse amplitude of the simultaneous multi-slice excitation pulse for the J-refocused acquisition. Results: The accuracy of multi-slice and single-slice rosette spectroscopic imaging (RSI) is comparable to conventional Cartesian-encoded spectroscopic imaging (CSI). Spectral analyses for the J-refocused studies of glutamate and myo-inositol show that the Cramer Rao lower bounds are not significantly different between the fast RSI and conventional CSI studies. Linear regressions of creatine/N-acetyl aspartate and glutamate/N-acetyl aspartate with tissue gray matter content are consistent with literature values. Conclusions: With minimal gradient demands and fast acquisition times, the 2.2 min to 9 min for single- to four-slice RSI acquisitions are well tolerated by healthy subjects and tumor patients, and show results that are consistent with clinical outcomes.
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(This article belongs to the Section Neuroimaging)
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Open AccessCommentary
Unraveling the Invisible: Topological Data Analysis as the New Frontier in Radiology’s Diagnostic Arsenal
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Yashbir Singh and Emilio Quaia
Tomography 2025, 11(1), 6; https://doi.org/10.3390/tomography11010006 - 9 Jan 2025
Abstract
This commentary examines Topological Data Analysis (TDA) in radiology imaging, highlighting its revolutionary potential in medical image interpretation. TDA, which is grounded in mathematical topology, provides novel insights into complex, high-dimensional radiological data through persistent homology and topological features. We explore TDA’s applications
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This commentary examines Topological Data Analysis (TDA) in radiology imaging, highlighting its revolutionary potential in medical image interpretation. TDA, which is grounded in mathematical topology, provides novel insights into complex, high-dimensional radiological data through persistent homology and topological features. We explore TDA’s applications across medical imaging domains, including tumor characterization, cardiovascular imaging, and COVID-19 detection, where it demonstrates 15–20% improvements over traditional methods. The synergy between TDA and artificial intelligence presents promising opportunities for enhanced diagnostic accuracy. While implementation challenges exist, TDA’s ability to uncover hidden patterns positions it as a transformative tool in modern radiology.
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(This article belongs to the Special Issue New Trends in Diagnostic and Interventional Radiology)
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Open AccessTechnical Note
The Role of 3D Virtual Anatomy and Scanning Environmental Electron Microscopy in Understanding Morphology and Pathology of Ancient Bodies
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Sara Salucci, Mirko Traversari, Laura Valentini, Ilaria Versari, Luca Ventura, Emanuela Giampalma, Elena Righi, Enrico Petrella, Pietro Gobbi, Gianandrea Pasquinelli and Irene Faenza
Tomography 2025, 11(1), 5; https://doi.org/10.3390/tomography11010005 - 3 Jan 2025
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Background/Objectives: Mummy studies allow to reconstruct the characteristic of a population in a specific spatiotemporal context, in terms of living conditions, pathologies and death. Radiology represents an efficient diagnostic technique able to establish the preservation state of mummified organs and to estimate the
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Background/Objectives: Mummy studies allow to reconstruct the characteristic of a population in a specific spatiotemporal context, in terms of living conditions, pathologies and death. Radiology represents an efficient diagnostic technique able to establish the preservation state of mummified organs and to estimate the patient's pathological conditions. However, the radiological approach shows some limitations. Although bone structures are easy to differentiate, soft tissue components are much more challenging, especially when they overlap. For this reason, computed tomography, a well-established approach that achieves optimal image contrast and three-dimensional reconstruction, has been introduced. This original article focuses attention on the role of virtual dissection as a promising technology for exploring human mummy anatomy and considers the potential of environmental scanning electron microscopy and X-ray spectroscopy as complementary approaches useful to understand the state of preservation of mummified remains. Methods: Ancient mummy corps have been analyzed through Anatomage Table 10 and environmental scanning electron microscope equipped with X-ray spectrometer; Results: Anatomage Table 10 through various volumetric renderings allows us to describe spine alteration due to osteoarthritis, dental state, and other clinical-pathological characteristics of different mummies. Environmental scanning electron microscope, with the advantage of observing mummified samples without prior specimen preparation, details on the state of tissue fragments. Skin, tendon and muscle show a preserved morphology and keratinocytes, collagen fibers and tendon structures are easily recognizable. Furthermore, X-ray spectrometer reveals in our tissue remains, the presence of compounds related to soil contamination. This investigation identifies a plethora of organic and inorganic substances where the mummies were found, providing crucial information about the mummification environment. Conclusions: These morphological and analytical techniques make it possible to study mummified bodies and describe their anatomical details in real size, in a non-invasive and innovative way, demonstrating that these interdisciplinary approaches could have great potential for improving knowledge in the study of ancient corpses.
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Open AccessArticle
Metabolic Differences in Neuroimaging with [18F]FDG in Rats Under Isoflurane and Hypnorm–Dormicum
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Aage Kristian Olsen Alstrup, Mette Simonsen, Kim Vang Hansen and Caroline C. Real
Tomography 2025, 11(1), 4; https://doi.org/10.3390/tomography11010004 - 3 Jan 2025
Abstract
Background: Anesthesia can significantly impact positron emission tomography (PET) neuroimaging in preclinical studies. Therefore, understanding these effects is crucial for accurate interpretation of the results. In this experiment, we investigate the effect of [18F]-labeled glucose analog fluorodeoxyglucose ([18F]FDG) uptake
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Background: Anesthesia can significantly impact positron emission tomography (PET) neuroimaging in preclinical studies. Therefore, understanding these effects is crucial for accurate interpretation of the results. In this experiment, we investigate the effect of [18F]-labeled glucose analog fluorodeoxyglucose ([18F]FDG) uptake in the brains of rats anesthetized with two commonly used anesthetics for rodents: isoflurane, an inhalation anesthetic, and Hypnorm–Dormicum, a combination injection anesthetic. Materials and Methods: Female adult Sprague Dawley rats were randomly assigned to one of two anesthesia groups: isoflurane or Hypnorm–Dormicum. The rats were submitted to dynamic [18F]FDG PET scan. The whole brain [18F]FDG standard uptake value (SUV) and the brain voxel-based analysis were performed. Results: The dynamic [18F]FDG data revealed that the brain SUV was 38% lower in the isoflurane group after 40 min of image (2.085 ± 0.3563 vs. 3.369 ± 0.5577, p = 0.0008). In voxel-based analysis between groups, the maps collaborate with SUV data, revealing a reduction in [18F]FDG uptake in the isoflurane group, primarily in the cortical regions, with additional small increases observed in the midbrain and cerebellum. Discussion and Conclusions: The observed differences in [18F]FDG uptake in the brain may be attributed to variations in metabolic activity. These results underscore the necessity for careful consideration of anesthetic choice and its impact on neuroimaging outcomes in future research.
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(This article belongs to the Section Brain Imaging)
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Dual-Stage AI Model for Enhanced CT Imaging: Precision Segmentation of Kidney and Tumors
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Nalan Karunanayake, Lin Lu, Hao Yang, Pengfei Geng, Oguz Akin, Helena Furberg, Lawrence H. Schwartz and Binsheng Zhao
Tomography 2025, 11(1), 3; https://doi.org/10.3390/tomography11010003 - 3 Jan 2025
Abstract
Objectives: Accurate kidney and tumor segmentation of computed tomography (CT) scans is vital for diagnosis and treatment, but manual methods are time-consuming and inconsistent, highlighting the value of AI automation. This study develops a fully automated AI model using vision transformers (ViTs) and
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Objectives: Accurate kidney and tumor segmentation of computed tomography (CT) scans is vital for diagnosis and treatment, but manual methods are time-consuming and inconsistent, highlighting the value of AI automation. This study develops a fully automated AI model using vision transformers (ViTs) and convolutional neural networks (CNNs) to detect and segment kidneys and kidney tumors in Contrast-Enhanced (CECT) scans, with a focus on improving sensitivity for small, indistinct tumors. Methods: The segmentation framework employs a ViT-based model for the kidney organ, followed by a 3D UNet model with enhanced connections and attention mechanisms for tumor detection and segmentation. Two CECT datasets were used: a public dataset (KiTS23: 489 scans) and a private institutional dataset (Private: 592 scans). The AI model was trained on 389 public scans, with validation performed on the remaining 100 scans and external validation performed on all 592 private scans. Tumors were categorized by TNM staging as small (≤4 cm) (KiTS23: 54%, Private: 41%), medium (>4 cm to ≤7 cm) (KiTS23: 24%, Private: 35%), and large (>7 cm) (KiTS23: 22%, Private: 24%) for detailed evaluation. Results: Kidney and kidney tumor segmentations were evaluated against manual annotations as the reference standard. The model achieved a Dice score of 0.97 ± 0.02 for kidney organ segmentation. For tumor detection and segmentation on the KiTS23 dataset, the sensitivities and average false-positive rates per patient were as follows: 0.90 and 0.23 for small tumors, 1.0 and 0.08 for medium tumors, and 0.96 and 0.04 for large tumors. The corresponding Dice scores were 0.84 ± 0.11, 0.89 ± 0.07, and 0.91 ± 0.06, respectively. External validation on the private data confirmed the model’s effectiveness, achieving the following sensitivities and average false-positive rates per patient: 0.89 and 0.15 for small tumors, 0.99 and 0.03 for medium tumors, and 1.0 and 0.01 for large tumors. The corresponding Dice scores were 0.84 ± 0.08, 0.89 ± 0.08, and 0.92 ± 0.06. Conclusions: The proposed model demonstrates consistent and robust performance in segmenting kidneys and kidney tumors of various sizes, with effective generalization to unseen data. This underscores the model’s significant potential for clinical integration, offering enhanced diagnostic precision and reliability in radiological assessments.
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(This article belongs to the Section Artificial Intelligence in Medical Imaging)
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Effective Dose Estimation in Computed Tomography by Machine Learning
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Matteo Ferrante, Paolo De Marco, Osvaldo Rampado, Laura Gianusso and Daniela Origgi
Tomography 2025, 11(1), 2; https://doi.org/10.3390/tomography11010002 - 2 Jan 2025
Abstract
Background: Computed tomography scans are widely used in everyday medical practice due to speed, image reliability, and detectability of a wide range of pathologies. Each scan exposes the patient to a radiation dose, and performing a fast estimation of the effective dose (E)
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Background: Computed tomography scans are widely used in everyday medical practice due to speed, image reliability, and detectability of a wide range of pathologies. Each scan exposes the patient to a radiation dose, and performing a fast estimation of the effective dose (E) is an important step for radiological safety. The aim of this work is to estimate E from patient and CT acquisition parameters in the absence of a dose-tracking software exploiting machine learning. Methods: In total, 69,037 CT acquisitions were collected with the dose-tracking software (DTS) available at our institution. E calculated by DTS was chosen as the target value for prediction. Different machine learning algorithms were selected, optimizing parameters to achieve the best performance for each algorithm. Effective dose was also estimated using DLP and k-factors, and with multiple linear regression. Mean absolute error (MAE, mean absolute percentage error (MAPE), and R2 were used to evaluate predictions in the test set and in an external dataset of 3800 acquisitions. Results: The random forest regressor (MAE: 0.416 mSv; MAPE: 7%; and R2: 0.98) showed best performances over the neural network and the support vector machine. However, all three machine learning algorithms outperformed effective dose estimation using k-factors (MAE: 2.06; MAPE: 26%) or multiple linear regression (MAE: 0.98; MAPE: 44.4%). The random forest regressor on the external dataset showed an MAE of 0.215 mSv and an MAPE of 7.1%. Conclusions: Our work demonstrated that machine learning models trained with data calculated by a dose-tracking software can provide good estimates of the effective dose just from patient and scanner parameters, without the need for a Monte Carlo approach.
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(This article belongs to the Topic AI in Medical Imaging and Image Processing)
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Open AccessArticle
Enhanced Disc Herniation Classification Using Grey Wolf Optimization Based on Hybrid Feature Extraction and Deep Learning Methods
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Yasemin Sarı and Nesrin Aydın Atasoy
Tomography 2025, 11(1), 1; https://doi.org/10.3390/tomography11010001 - 26 Dec 2024
Abstract
Due to the increasing number of people working at computers in professional settings, the incidence of lumbar disc herniation is increasing. Background/Objectives: The early diagnosis and treatment of lumbar disc herniation is much more likely to yield favorable results, allowing the hernia to
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Due to the increasing number of people working at computers in professional settings, the incidence of lumbar disc herniation is increasing. Background/Objectives: The early diagnosis and treatment of lumbar disc herniation is much more likely to yield favorable results, allowing the hernia to be treated before it develops further. The aim of this study was to classify lumbar disc herniations in a computer-aided, fully automated manner using magnetic resonance images (MRIs). Methods: This study presents a hybrid method integrating residual network (ResNet50), grey wolf optimization (GWO), and machine learning classifiers such as multi-layer perceptron (MLP) and support vector machine (SVM) to improve classification performance. The proposed approach begins with feature extraction using ResNet50, a deep convolutional neural network known for its robust feature representation capabilities. ResNet50’s residual connections allow for effective training and high-quality feature extraction from input images. Following feature extraction, the GWO algorithm, inspired by the social hierarchy and hunting behavior of grey wolves, is employed to optimize the feature set by selecting the most relevant features. Finally, the optimized feature set is fed into machine learning classifiers (MLP and SVM) for classification. The use of various activation functions (e.g., ReLU, identity, logistic, and tanh) in MLP and various kernel functions (e.g., linear, rbf, sigmoid, and polynomial) in SVM allows for a thorough evaluation of the classifiers’ performance. Results: The proposed methodology demonstrates significant improvements in metrics such as accuracy, precision, recall, and F1 score, outperforming traditional approaches in several cases. These results highlight the effectiveness of combining deep learning-based feature extraction with optimization and machine learning classifiers. Conclusions: Compared to other methods, such as capsule networks (CapsNet), EfficientNetB6, and DenseNet169, the proposed ResNet50-GWO-SVM approach achieved superior performance across all metrics, including accuracy, precision, recall, and F1 score, demonstrating its robustness and effectiveness in classification tasks.
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(This article belongs to the Topic Deep Learning for Medical Image Analysis and Medical Natural Language Processing)
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Automated Measurement of Effective Radiation Dose by 18F-Fluorodeoxyglucose Positron Emission Tomography/Computed Tomography
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Yujin Eom, Yong-Jin Park, Sumin Lee, Su-Jin Lee, Young-Sil An, Bok-Nam Park and Joon-Kee Yoon
Tomography 2024, 10(12), 2144-2157; https://doi.org/10.3390/tomography10120151 - 23 Dec 2024
Abstract
Background/Objectives: Calculating the radiation dose from CT in 18F-PET/CT examinations poses a significant challenge. The objective of this study is to develop a deep learning-based automated program that standardizes the measurement of radiation doses. Methods: The torso CT was segmented into six
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Background/Objectives: Calculating the radiation dose from CT in 18F-PET/CT examinations poses a significant challenge. The objective of this study is to develop a deep learning-based automated program that standardizes the measurement of radiation doses. Methods: The torso CT was segmented into six distinct regions using TotalSegmentator. An automated program was employed to extract the necessary information and calculate the effective dose (ED) of PET/CT. The accuracy of our automated program was verified by comparing the EDs calculated by the program with those determined by a nuclear medicine physician (n = 30). Additionally, we compared the EDs obtained from an older PET/CT scanner with those from a newer PET/CT scanner (n = 42). Results: The CT ED calculated by the automated program was not significantly different from that calculated by the nuclear medicine physician (3.67 ± 0.61 mSv and 3.62 ± 0.60 mSv, respectively, p = 0.7623). Similarly, the total ED showed no significant difference between the two calculation methods (8.10 ± 1.40 mSv and 8.05 ± 1.39 mSv, respectively, p = 0.8957). A very strong correlation was observed in both the CT ED and total ED between the two measurements (r2 = 0.9981 and 0.9996, respectively). The automated program showed excellent repeatability and reproducibility. When comparing the older and newer PET/CT scanners, the PET ED was significantly lower in the newer scanner than in the older scanner (4.39 ± 0.91 mSv and 6.00 ± 1.17 mSv, respectively, p < 0.0001). Consequently, the total ED was significantly lower in the newer scanner than in the older scanner (8.22 ± 1.53 mSv and 9.65 ± 1.34 mSv, respectively, p < 0.0001). Conclusions: We successfully developed an automated program for calculating the ED of torso 18F-PET/CT. By integrating a deep learning model, the program effectively eliminated inter-operator variability.
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(This article belongs to the Topic AI in Medical Imaging and Image Processing)
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Open AccessArticle
Evaluating Medical Image Segmentation Models Using Augmentation
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Mattin Sayed, Sari Saba-Sadiya, Benedikt Wichtlhuber, Julia Dietz, Matthias Neitzel, Leopold Keller, Gemma Roig and Andreas M. Bucher
Tomography 2024, 10(12), 2128-2143; https://doi.org/10.3390/tomography10120150 - 23 Dec 2024
Abstract
Background: Medical imagesegmentation is an essential step in both clinical and research applications, and automated segmentation models—such as TotalSegmentator—have become ubiquitous. However, robust methods for validating the accuracy of these models remain limited, and manual inspection is often necessary before the segmentation masks
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Background: Medical imagesegmentation is an essential step in both clinical and research applications, and automated segmentation models—such as TotalSegmentator—have become ubiquitous. However, robust methods for validating the accuracy of these models remain limited, and manual inspection is often necessary before the segmentation masks produced by these models can be used. Methods: To address this gap, we have developed a novel validation framework for segmentation models, leveraging data augmentation to assess model consistency. We produced segmentation masks for both the original and augmented scans, and we calculated the alignment metrics between these segmentation masks. Results: Our results demonstrate strong correlation between the segmentation quality of the original scan and the average alignment between the masks of the original and augmented CT scans. These results were further validated by supporting metrics, including the coefficient of variance and the average symmetric surface distance, indicating that agreement with augmented-scan segmentation masks is a valid proxy for segmentation quality. Conclusions: Overall, our framework offers a pipeline for evaluating segmentation performance without relying on manually labeled ground truth data, establishing a foundation for future advancements in automated medical image analysis.
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(This article belongs to the Section Artificial Intelligence in Medical Imaging)
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Open AccessReview
Pediatric Neuroimaging of Multiple Sclerosis and Neuroinflammatory Diseases
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Chloe Dunseath, Emma J. Bova, Elizabeth Wilson, Marguerite Care and Kim M. Cecil
Tomography 2024, 10(12), 2100-2127; https://doi.org/10.3390/tomography10120149 - 20 Dec 2024
Abstract
Using a pediatric-focused lens, this review article briefly summarizes the presentation of several demyelinating and neuroinflammatory diseases using conventional magnetic resonance imaging (MRI) sequences, such as T1-weighted with and without an exogenous gadolinium-based contrast agent, T2-weighted, and fluid-attenuated inversion recovery (FLAIR). These conventional
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Using a pediatric-focused lens, this review article briefly summarizes the presentation of several demyelinating and neuroinflammatory diseases using conventional magnetic resonance imaging (MRI) sequences, such as T1-weighted with and without an exogenous gadolinium-based contrast agent, T2-weighted, and fluid-attenuated inversion recovery (FLAIR). These conventional sequences exploit the intrinsic properties of tissue to provide a distinct signal contrast that is useful for evaluating disease features and monitoring treatment responses in patients by characterizing lesion involvement in the central nervous system and tracking temporal features with blood–brain barrier disruption. Illustrative examples are presented for pediatric-onset multiple sclerosis and neuroinflammatory diseases. This work also highlights findings from advanced MRI techniques, often infrequently employed due to the challenges involved in acquisition, post-processing, and interpretation, and identifies the need for future studies to extract the unique information, such as alterations in neurochemistry, disruptions of structural organization, or atypical functional connectivity, that may be relevant for the diagnosis and management of disease.
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(This article belongs to the Section Neuroimaging)
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Open AccessArticle
Interobserver Variability in Manual Versus Semi-Automatic CT Assessments of Small Lung Nodule Diameter and Volume
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Frida Zacharias and Tony Martin Svahn
Tomography 2024, 10(12), 2087-2099; https://doi.org/10.3390/tomography10120148 - 19 Dec 2024
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Background: This study aimed to assess the interobserver variability of semi-automatic diameter and volumetric measurements versus manual diameter measurements for small lung nodules identified on computed tomography scans. Methods: The radiological patient database was searched for CT thorax examinations with at least one
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Background: This study aimed to assess the interobserver variability of semi-automatic diameter and volumetric measurements versus manual diameter measurements for small lung nodules identified on computed tomography scans. Methods: The radiological patient database was searched for CT thorax examinations with at least one noncalcified solid nodule (∼3–10 mm). Three radiologists with four to six years of experience evaluated each nodule in accordance with the Fleischner Society guidelines using standard diameter measurements, semi-automatic lesion diameter measurements, and volumetric assessments. Spearman’s correlation coefficient measured intermeasurement agreement. We used descriptive Bland–Altman plots to visualize agreement in the measured data. Potential discrepancies were analyzed. Results: We studied a total of twenty-six nodules. Spearman’s test showed that there was a much stronger relationship (p < 0.05) between reviewers for the semi-automatic diameter and volume measurements (avg. r = 0.97 ± 0.017 and 0.99 ± 0.005, respectively) than for the manual method (avg. r = 0.91 ± 0.017). In the Bland–Altman test, the semi-automatic diameter measure outperformed the manual method for all comparisons, while the volumetric method had better results in two out of three comparisons. The incidence of reviewers modifying the software’s automatic outline varied between 62% and 92%. Conclusions: Semi-automatic techniques significantly reduced interobserver variability for small solid nodules, which has important implications for diagnostic assessments and screening. Both the semi-automatic diameter and semi-automatic volume measurements showed improvements over the manual measurement approach. Training could further diminish observer variability, given the considerable diversity in the number of adjustments among reviewers.
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Open AccessArticle
Noise Reduction in Brain CT: A Comparative Study of Deep Learning and Hybrid Iterative Reconstruction Using Multiple Parameters
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Yusuke Inoue, Hiroyasu Itoh, Hirofumi Hata, Hiroki Miyatake, Kohei Mitsui, Shunichi Uehara and Chisaki Masuda
Tomography 2024, 10(12), 2073-2086; https://doi.org/10.3390/tomography10120147 - 18 Dec 2024
Abstract
Objectives: We evaluated the noise reduction effects of deep learning reconstruction (DLR) and hybrid iterative reconstruction (HIR) in brain computed tomography (CT). Methods: CT images of a 16 cm dosimetry phantom, a head phantom, and the brains of 11 patients were reconstructed using
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Objectives: We evaluated the noise reduction effects of deep learning reconstruction (DLR) and hybrid iterative reconstruction (HIR) in brain computed tomography (CT). Methods: CT images of a 16 cm dosimetry phantom, a head phantom, and the brains of 11 patients were reconstructed using filtered backprojection (FBP) and various levels of DLR and HIR. The slice thickness was 5, 2.5, 1.25, and 0.625 mm. Phantom imaging was also conducted at various tube currents. The noise reduction ratio was calculated using FBP as the reference. For patient imaging, overall image quality was visually compared between DLR and HIR images that exhibited similar noise reduction ratios. Results: The noise reduction ratio increased with increasing levels of DLR and HIR in phantom and patient imaging. For DLR, noise reduction was more pronounced with decreasing slice thickness, while such thickness dependence was less evident for HIR. Although the noise reduction effects of DLR were similar between the head phantom and patients, they differed for the dosimetry phantom. Variations between imaging objects were small for HIR. The noise reduction ratio was low at low tube currents for the dosimetry phantom using DLR; otherwise, the influence of the tube current was small. In terms of visual image quality, DLR outperformed HIR in 1.25 mm thick images but not in thicker images. Conclusions: The degree of noise reduction using DLR depends on the slice thickness, tube current, and imaging object in addition to the level of DLR, which should be considered in the clinical use of DLR. DLR may be particularly beneficial for thin-slice imaging.
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(This article belongs to the Section Brain Imaging)
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Open AccessArticle
BAE-ViT: An Efficient Multimodal Vision Transformer for Bone Age Estimation
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Jinnian Zhang, Weijie Chen, Tanmayee Joshi, Xiaomin Zhang, Po-Ling Loh, Varun Jog, Richard J. Bruce, John W. Garrett and Alan B. McMillan
Tomography 2024, 10(12), 2058-2072; https://doi.org/10.3390/tomography10120146 - 13 Dec 2024
Abstract
This research introduces BAE-ViT, a specialized vision transformer model developed for bone age estimation (BAE). This model is designed to efficiently merge image and sex data, a capability not present in traditional convolutional neural networks (CNNs). BAE-ViT employs a novel data fusion method
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This research introduces BAE-ViT, a specialized vision transformer model developed for bone age estimation (BAE). This model is designed to efficiently merge image and sex data, a capability not present in traditional convolutional neural networks (CNNs). BAE-ViT employs a novel data fusion method to facilitate detailed interactions between visual and non-visual data by tokenizing non-visual information and concatenating all tokens (visual or non-visual) as the input to the model. The model underwent training on a large-scale dataset from the 2017 RSNA Pediatric Bone Age Machine Learning Challenge, where it exhibited commendable performance, particularly excelling in handling image distortions compared to existing models. The effectiveness of BAE-ViT was further affirmed through statistical analysis, demonstrating a strong correlation with the actual ground-truth labels. This study contributes to the field by showcasing the potential of vision transformers as a viable option for integrating multimodal data in medical imaging applications, specifically emphasizing their capacity to incorporate non-visual elements like sex information into the framework. This tokenization method not only demonstrates superior performance in this specific task but also offers a versatile framework for integrating multimodal data in medical imaging applications.
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(This article belongs to the Topic AI in Medical Imaging and Image Processing)
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CNN-Based Cross-Modality Fusion for Enhanced Breast Cancer Detection Using Mammography and Ultrasound
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Yi-Ming Wang, Chi-Yuan Wang, Kuo-Ying Liu, Yung-Hui Huang, Tai-Been Chen, Kon-Ning Chiu, Chih-Yu Liang and Nan-Han Lu
Tomography 2024, 10(12), 2038-2057; https://doi.org/10.3390/tomography10120145 (registering DOI) - 12 Dec 2024
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Background/Objectives: Breast cancer is a leading cause of mortality among women in Taiwan and globally. Non-invasive imaging methods, such as mammography and ultrasound, are critical for early detection, yet standalone modalities have limitations in regard to their diagnostic accuracy. This study aims to
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Background/Objectives: Breast cancer is a leading cause of mortality among women in Taiwan and globally. Non-invasive imaging methods, such as mammography and ultrasound, are critical for early detection, yet standalone modalities have limitations in regard to their diagnostic accuracy. This study aims to enhance breast cancer detection through a cross-modality fusion approach combining mammography and ultrasound imaging, using advanced convolutional neural network (CNN) architectures. Materials and Methods: Breast images were sourced from public datasets, including the RSNA, the PAS, and Kaggle, and categorized into malignant and benign groups. Data augmentation techniques were used to address imbalances in the ultrasound dataset. Three models were developed: (1) pre-trained CNNs integrated with machine learning classifiers, (2) transfer learning-based CNNs, and (3) a custom-designed 17-layer CNN for direct classification. The performance of the models was evaluated using metrics such as accuracy and the Kappa score. Results: The custom 17-layer CNN outperformed the other models, achieving an accuracy of 0.964 and a Kappa score of 0.927. The transfer learning model achieved moderate performance (accuracy 0.846, Kappa 0.694), while the pre-trained CNNs with machine learning classifiers yielded the lowest results (accuracy 0.780, Kappa 0.559). Cross-modality fusion proved effective in leveraging the complementary strengths of mammography and ultrasound imaging. Conclusions: This study demonstrates the potential of cross-modality imaging and tailored CNN architectures to significantly improve diagnostic accuracy and reliability in breast cancer detection. The custom-designed model offers a practical solution for early detection, potentially reducing false positives and false negatives, and improving patient outcomes through timely and accurate diagnosis.
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Neural Modulation Alteration to Positive and Negative Emotions in Depressed Patients: Insights from fMRI Using Positive/Negative Emotion Atlas
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Yu Feng, Weiming Zeng, Yifan Xie, Hongyu Chen, Lei Wang, Yingying Wang, Hongjie Yan, Kaile Zhang, Ran Tao, Wai Ting Siok and Nizhuan Wang
Tomography 2024, 10(12), 2014-2037; https://doi.org/10.3390/tomography10120144 - 9 Dec 2024
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Background: Although it has been noticed that depressed patients show differences in processing emotions, the precise neural modulation mechanisms of positive and negative emotions remain elusive. FMRI is a cutting-edge medical imaging technology renowned for its high spatial resolution and dynamic temporal information,
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Background: Although it has been noticed that depressed patients show differences in processing emotions, the precise neural modulation mechanisms of positive and negative emotions remain elusive. FMRI is a cutting-edge medical imaging technology renowned for its high spatial resolution and dynamic temporal information, making it particularly suitable for the neural dynamics of depression research. Methods: To address this gap, our study firstly leveraged fMRI to delineate activated regions associated with positive and negative emotions in healthy individuals, resulting in the creation of the positive emotion atlas (PEA) and the negative emotion atlas (NEA). Subsequently, we examined neuroimaging changes in depression patients using these atlases and evaluated their diagnostic performance based on machine learning. Results: Our findings demonstrate that the classification accuracy of depressed patients based on PEA and NEA exceeded 0.70, a notable improvement compared to the whole-brain atlases. Furthermore, ALFF analysis unveiled significant differences between depressed patients and healthy controls in eight functional clusters during the NEA, focusing on the left cuneus, cingulate gyrus, and superior parietal lobule. In contrast, the PEA revealed more pronounced differences across fifteen clusters, involving the right fusiform gyrus, parahippocampal gyrus, and inferior parietal lobule. Conclusions: These findings emphasize the complex interplay between emotion modulation and depression, showcasing significant alterations in both PEA and NEA among depression patients. This research enhances our understanding of emotion modulation in depression, with implications for diagnosis and treatment evaluation.
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Open AccessReview
Pediatric Meningeal Diseases: What Radiologists Need to Know
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Dhrumil Deveshkumar Patel, Laura Z. Fenton, Swastika Lamture and Vinay Kandula
Tomography 2024, 10(12), 1970-2013; https://doi.org/10.3390/tomography10120143 - 8 Dec 2024
Abstract
Evaluating altered mental status and suspected meningeal disorders in children often begins with imaging, typically before a lumbar puncture. The challenge is that meningeal enhancement is a common finding across a range of pathologies, making diagnosis complex. This review proposes a categorization of
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Evaluating altered mental status and suspected meningeal disorders in children often begins with imaging, typically before a lumbar puncture. The challenge is that meningeal enhancement is a common finding across a range of pathologies, making diagnosis complex. This review proposes a categorization of meningeal diseases based on their predominant imaging characteristics. It includes a detailed description of the clinical and imaging features of various conditions that lead to leptomeningeal or pachymeningeal enhancement in children and adolescents. These conditions encompass infectious meningitis (viral, bacterial, tuberculous, algal, and fungal), autoimmune diseases (such as anti-MOG demyelination, neurosarcoidosis, Guillain-Barré syndrome, idiopathic hypertrophic pachymeningitis, and NMDA-related encephalitis), primary and secondary tumors (including diffuse glioneuronal tumor of childhood, primary CNS rhabdomyosarcoma, primary CNS tumoral metastasis, extracranial tumor metastasis, and lymphoma), tumor-like diseases (Langerhans cell histiocytosis and ALK-positive histiocytosis), vascular causes (such as pial angiomatosis, ANCA-related vasculitis, and Moyamoya disease), and other disorders like spontaneous intracranial hypotension and posterior reversible encephalopathy syndrome. Despite the nonspecific nature of imaging findings associated with meningeal lesions, narrowing down the differential diagnoses is crucial, as each condition requires a tailored and specific treatment approach.
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(This article belongs to the Section Neuroimaging)
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A Novel Method for the Generation of Realistic Lung Nodules Visualized Under X-Ray Imaging
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Ahmet Peker, Ayushi Sinha, Robert M. King, Jeffrey Minnaard, William van der Sterren, Torre Bydlon, Alexander A. Bankier and Matthew J. Gounis
Tomography 2024, 10(12), 1959-1969; https://doi.org/10.3390/tomography10120142 - 5 Dec 2024
Abstract
Objective: Image-guided diagnosis and treatment of lung lesions is an active area of research. With the growing number of solutions proposed, there is also a growing need to establish a standard for the evaluation of these solutions. Thus, realistic phantom and preclinical environments
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Objective: Image-guided diagnosis and treatment of lung lesions is an active area of research. With the growing number of solutions proposed, there is also a growing need to establish a standard for the evaluation of these solutions. Thus, realistic phantom and preclinical environments must be established. Realistic study environments must include implanted lung nodules that are morphologically similar to real lung lesions under X-ray imaging. Methods: Various materials were injected into a phantom swine lung to evaluate the similarity to real lung lesions in size, location, density, and grayscale intensities in X-ray imaging. A combination of -butyl cyanoacrylate (n-BCA) and ethiodized oil displayed radiopacity that was most similar to real lung lesions, and various injection techniques were evaluated to ensure easy implantation and to generate features mimicking malignant lesions. Results: The techniques used generated implanted nodules with properties mimicking solid nodules with features including pleural extensions and spiculations, which are typically present in malignant lesions. Using only n-BCA, implanted nodules mimicking ground glass opacity were also generated. These results are condensed into a set of recommendations that prescribe the materials and techniques that should be used to reproduce these nodules. Conclusions: Generated recommendations on the use of n-BCA and ethiodized oil can help establish a standard for the evaluation of new image-guided solutions and refinement of algorithms in phantom and animal studies with realistic nodules.
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(This article belongs to the Section Cancer Imaging)
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Femoroacetabular Impingement Morphological Changes in Sample of Patients Living in Southern Mexico Using Tomographic Angle Measures
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Ricardo Cardenas-Dajdaj, Arianne Flores-Rivera, Marcos Rivero-Peraza and Nina Mendez-Dominguez
Tomography 2024, 10(12), 1947-1958; https://doi.org/10.3390/tomography10120141 - 3 Dec 2024
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Background: Femoroacetabular impingement (FAI) is a condition caused by abnormal contact between the femur head and the acetabulum, which damages the labrum and articular cartilage. While the prevalence and the type of impingement may vary across human groups, the variability among populations with
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Background: Femoroacetabular impingement (FAI) is a condition caused by abnormal contact between the femur head and the acetabulum, which damages the labrum and articular cartilage. While the prevalence and the type of impingement may vary across human groups, the variability among populations with short height or with a high prevalence of overweight has not yet been explored. Latin American studies have rarely been conducted in reference to this condition, including the Mayan and mestizo populations from the Yucatan Peninsula. Objective: We aimed to describe the prevalence of morphological changes in femoroacetabular impingement by measuring radiological angles in abdominopelvic tomography studies in a sample of patients from a population with short height. Methods: In this prospective study, patients with programmed abdominopelvic tomography unrelated to femoroacetabular impingement but with consistent symptoms were included. Among the 98 patients, the overall prevalence of unrelated femoroacetabular impingement was 47%, and the pincer-type was the most frequent. The cam-type occurred more frequently among individuals with taller stature compared to their peers. Alpha and Wiberg angles predicted cam- and pincer-type, respectively, with over 0.95 area under the curve values in ROC analyses. The inter-rater agreement in the study was >91%. Conclusions: In a patient population from Yucatan, Mexico, attending ambulatory consultations unrelated to femoroacetabular impingement, an overall morphological changes prevalence of 47% was observed. Angle measurements using tomographic techniques can be used to predict cam- and pincer-type femoroacetabular impingement. Average stature was observed to be shorter in patients with cam-type femoroacetabular impingement, but body mass index did not vary between groups.
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