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1,044 Results Found

  • Feature Paper
  • Review
  • Open Access
480 Citations
82,068 Views
60 Pages

Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development

  • Outi M. H. Salo-Ahen,
  • Ida Alanko,
  • Rajendra Bhadane,
  • Alexandre M. J. J. Bonvin,
  • Rodrigo Vargas Honorato,
  • Shakhawath Hossain,
  • André H. Juffer,
  • Aleksei Kabedev,
  • Maija Lahtela-Kakkonen and
  • Michiel Vanmeert
  • + 9 authors

30 December 2020

Molecular dynamics (MD) simulations have become increasingly useful in the modern drug development process. In this review, we give a broad overview of the current application possibilities of MD in drug discovery and pharmaceutical development. Star...

  • Article
  • Open Access
1 Citations
1,702 Views
32 Pages

The goal of this study was to construct a mathematical and computational model that accurately represents the complex, flexible movements and mechanics of an elephant’s trunk. Rather than serving as a biological study, the elephant trunk model...

  • Review
  • Open Access
12 Citations
5,685 Views
45 Pages

9 November 2024

Pharmaceutical cocrystals offer a versatile approach to enhancing the properties of drug compounds, making them an important tool in drug formulation and development by improving the therapeutic performance and patient experience of pharmaceutical pr...

  • Article
  • Open Access
61 Citations
8,726 Views
15 Pages

Localized In Situ Nanoemulgel Drug Delivery System of Quercetin for Periodontitis: Development and Computational Simulations

  • Gururaj C. Aithal,
  • Usha Yogendra Nayak,
  • Chetan Mehta,
  • Reema Narayan,
  • Pratibha Gopalkrishna,
  • Sudharsan Pandiyan and
  • Sanjay Garg

This study was aimed at formulating a bioabsorbable, controlled-release, nanoemulgel of Quercetin, a potent antimicrobial and anti-inflammatory agent for the treatment of periodontitis that could improve its solubility and bioavailability. Screening...

  • Article
  • Open Access
6 Citations
3,159 Views
16 Pages

In Silico Investigation of the Impact of Reaction Kinetics on the Physico-Mechanical Properties of Coconut-Oil-Based Rigid Polyurethane Foam

  • Fortia Louise Adeliene M. Alfeche,
  • Roger G. Dingcong,
  • Leanne Christie C. Mendija,
  • Harith H. Al-Moameri,
  • Gerard G. Dumancas,
  • Alona A. Lubguban,
  • Roberto M. Malaluan,
  • Arnold A. Alguno and
  • Arnold A. Lubguban

25 April 2023

Conventionally, designing rigid polyurethane foams (RPUFs) with improved physico-mechanical properties from new, bio-based polyols is performed by modifying foam formulations via experimentation. However, experimental endeavors are very resource-depe...

  • Article
  • Open Access
8 Citations
3,918 Views
22 Pages

27 October 2022

In this work, a simple, easy to use MATLAB code is presented for the optimal design of materials for 3D domains. For the optimal design of materials, the theoretical framework of topology optimization and that of homogenization were utilized to devel...

  • Article
  • Open Access
12 Citations
2,220 Views
22 Pages

Computing Offloading Based on TD3 Algorithm in Cache-Assisted Vehicular NOMA–MEC Networks

  • Tianqing Zhou,
  • Ming Xu,
  • Dong Qin,
  • Xuefang Nie,
  • Xuan Li and
  • Chunguo Li

9 November 2023

In this paper, in order to reduce the energy consumption and time of data transmission, the non-orthogonal multiple access (NOMA) and mobile edge caching technologies are jointly considered in mobile edge computing (MEC) networks. As for the cache-as...

  • Feature Paper
  • Article
  • Open Access
1,008 Views
29 Pages

A BEM Adjoint-Based Differentiable Shape Optimization of a Stealth Aircraft

  • Charles Thoulon,
  • Gilbert Roge and
  • Olivier Pironneau

1 July 2025

Modern fighter aircraft have an increasing need for at least a moderate level of stealth, and the shape design must bear a part of this constraint. However, the high frequency of close range radar makes high-fidelity radar cross-section computation m...

  • Article
  • Open Access
7 Citations
2,342 Views
17 Pages

7 February 2023

The systematic design of exact optimal designs of experiments is typically challenging, as it results in nonconvex optimization problems. The literature on the computation of model-based exact optimal designs of experiments via mathematical programmi...

  • Article
  • Open Access
433 Views
32 Pages

30 September 2025

This paper introduces a novel hybrid metaheuristic optimization algorithm, combining improved formulations of the Slime Mould Algorithm (SMA) and the Jaya Algorithm (JA) (HSMJA) with online distributed computing (ODC), referred to as HSMJA-ODC. While...

  • Article
  • Open Access
20 Citations
6,966 Views
22 Pages

Effect of Levels of Fidelity on Steady Aerodynamic and Static Aeroelastic Computations

  • Adrien Crovato,
  • Hugo S. Almeida,
  • Gareth Vio,
  • Gustavo H. Silva,
  • Alex P. Prado,
  • Carlos Breviglieri,
  • Huseyin Guner,
  • Pedro H. Cabral,
  • Romain Boman and
  • Grigorios Dimitriadis
  • + 1 author

Static aeroelastic deformations are nowadays considered as early as in the preliminary aircraft design stage, where low-fidelity linear aerodynamic modeling is favored because of its low computational cost. However, transonic flows are essentially no...

  • Feature Paper
  • Article
  • Open Access
1,209 Views
12 Pages

4 November 2023

In this work, alternative product formulations are represented as a bipartite graph, and mixed-integer programming is used to find a graph partitioning that identifies the most dissimilar formulations within a potentially large design space. This inv...

  • Review
  • Open Access
2,598 Views
33 Pages

24 September 2025

Amorphous solid dispersions (ASDs) represent a promising formulation strategy for improving the solubility and bioavailability of poorly water-soluble drugs, a major challenge in pharmaceutical development. This review provides a comprehensive analys...

  • Proceeding Paper
  • Open Access
5 Citations
1,874 Views
7 Pages

1 November 2021

Sensors are devices that measures a change in physical stimulus by converting it into an electronic signal which can be read by a designated instrument. To overcome the real-life challenges associated with powering a sensor using conventional batteri...

  • Article
  • Open Access
19 Citations
10,996 Views
20 Pages

Physics-Informed Neural Networks for Low Reynolds Number Flows over Cylinder

  • Elijah Hao Wei Ang,
  • Guangjian Wang and
  • Bing Feng Ng

7 June 2023

Physics-informed neural network (PINN) architectures are recent developments that can act as surrogate models for fluid dynamics in order to reduce computational costs. PINNs make use of deep neural networks, where the Navier-Stokes equation and free...

  • Article
  • Open Access
5 Citations
2,046 Views
19 Pages

Simulation-Driven Design Optimization of a Destroyer-Type Vessel via Multi-Fidelity Supervised Active Learning

  • Emanuele Spinosa,
  • Riccardo Pellegrini,
  • Antonio Posa,
  • Riccardo Broglia,
  • Mario De Biase and
  • Andrea Serani

25 November 2023

The paper presents the use of a supervised active learning approach for the solution of a simulation-driven design optimization (SDDO) problem, pertaining to the resistance reduction of a destroyer-type vessel in calm water. The optimization is formu...

  • Communication
  • Open Access
41 Citations
7,895 Views
13 Pages

8 July 2015

Thus far, various phenomenon-mimicking algorithms, such as genetic algorithm, simulated annealing, tabu search, shuffled frog-leaping, ant colony optimization, harmony search, cross entropy, scatter search, and honey-bee mating, have been proposed to...

  • Feature Paper
  • Article
  • Open Access
43 Citations
11,335 Views
27 Pages

Variational Characterization of Free Energy: Theory and Algorithms

  • Carsten Hartmann,
  • Lorenz Richter,
  • Christof Schütte and
  • Wei Zhang

20 November 2017

The article surveys and extends variational formulations of the thermodynamic free energy and discusses their information-theoretic content from the perspective of mathematical statistics. We revisit the well-known Jarzynski equality for nonequilibri...

  • Review
  • Open Access
71 Citations
18,908 Views
23 Pages

Therapeutic antibody technology heavily dominates the biologics market and continues to present as a significant industrial interest in developing novel and improved antibody treatment strategies. Many noteworthy advancements in the last decades have...

  • Article
  • Open Access
2,441 Views
80 Pages

1 May 2022

An extended form of robust continuous-time linear programming problem with time-dependent matrices is formulated in this paper. This complicated problem is studied theoretically in this paper. We also design a computational procedure to solve this pr...

  • Feature Paper
  • Article
  • Open Access
387 Views
21 Pages

27 November 2025

Accurate and efficient evaluation of the intersection area between two axis-aligned ellipses is essential in applications where the coordinate system or underlying geometry naturally imposes alignment. However, most existing numerical integration tec...

  • Article
  • Open Access
3,284 Views
20 Pages

Heterogeneities of individual attributes and behaviors play an important role in the complex process of epidemic spreading. Compared to differential equation-based system dynamical models of infectious disease transmission, individual-based epidemic...

  • Article
  • Open Access
45 Citations
6,799 Views
20 Pages

An Optimization-Based Framework to Define the Probabilistic Design Space of Pharmaceutical Processes with Model Uncertainty

  • Daniel Laky,
  • Shu Xu,
  • Jose S. Rodriguez,
  • Shankar Vaidyaraman,
  • Salvador García Muñoz and
  • Carl Laird

14 February 2019

To increase manufacturing flexibility and system understanding in pharmaceutical development, the FDA launched the quality by design (QbD) initiative. Within QbD, the design space is the multidimensional region (of the input variables and process par...

  • Review
  • Open Access
35 Citations
5,726 Views
23 Pages

The rational design of molecularly imprinted polymers has evolved along with state-of-the-art experimental imprinting strategies taking advantage of sophisticated computational tools. In silico methods enable the screening and simulation of innovativ...

  • Article
  • Open Access
3 Citations
1,879 Views
17 Pages

15 February 2023

This paper addresses the problem of estimating the state of a class of interval and positive nonlinear switched systems. The considered system class is represented by Metzler–Takagi–Sugeno fuzzy switched models with positive Lipschitz non...

  • Article
  • Open Access
3 Citations
4,367 Views
16 Pages

25 January 2022

Topology and shape optimization are still rarely applied to problems in electromagnetic design due to the computational complexity and limited commercial tooling, even though components such as electrical motors, magnetic springs or magnetic bearings...

  • Article
  • Open Access
2 Citations
1,953 Views
23 Pages

Dynamic Error Estimation in Higher-Order Finite Elements

  • Anna Karpik,
  • Francesco Cosco and
  • Domenico Mundo

11 August 2024

The Finite Element Method (FEM) has emerged as a powerful tool for predicting the behavior of industrial products, including those with complex geometries or uncommon materials. Finite Element Analysis (FEA) is widely used to study structural vibrati...

  • Article
  • Open Access
1 Citations
2,279 Views
16 Pages

Computational Amendment of Parenteral In Situ Forming Particulates’ Characteristics: Design of Experiment and PBPK Physiological Modeling

  • Nada M. El Hoffy,
  • Ahmed S. Yacoub,
  • Amira M. Ghoneim,
  • Magdy Ibrahim,
  • Hussein O. Ammar and
  • Nermin Eissa

Lipid and/or polymer-based drug conjugates can potentially minimize side effects by increasing drug accumulation at target sites and thus augment patient compliance. Formulation factors can present a potent influence on the characteristics of the obt...

  • Article
  • Open Access
13 Citations
5,454 Views
26 Pages

Towards Generative Design of Computationally Efficient Mathematical Models with Evolutionary Learning

  • Anna V. Kalyuzhnaya,
  • Nikolay O. Nikitin,
  • Alexander Hvatov,
  • Mikhail Maslyaev,
  • Mikhail Yachmenkov and
  • Alexander Boukhanovsky

27 December 2020

In this paper, we describe the concept of generative design approach applied to the automated evolutionary learning of mathematical models in a computationally efficient way. To formalize the problems of models’ design and co-design, the genera...

  • Article
  • Open Access
18 Citations
7,833 Views
24 Pages

A Mixed-Integer Linear Formulation for a Dynamic Modified Stochastic p-Median Problem in a Competitive Supply Chain Network Design

  • Amir Hossein Sadeghi,
  • Ziyuan Sun,
  • Amirreza Sahebi-Fakhrabad,
  • Hamid Arzani and
  • Robert Handfield

Background: The Dynamic Modified Stochastic p-Median Problem (DMS-p-MP) is an important problem in supply chain network design, as it deals with the optimal location of facilities and the allocation of demand in a dynamic and uncertain environment. M...

  • Article
  • Open Access
11 Citations
3,237 Views
17 Pages

Layer-Wise Discontinuous Galerkin Methods for Piezoelectric Laminates

  • Ivano Benedetti,
  • Vincenzo Gulizzi and
  • Alberto Milazzo

2 December 2020

In this work, a novel high-order formulation for multilayered piezoelectric plates based on the combination of variable-order interior penalty discontinuous Galerkin methods and general layer-wise plate theories is presented, implemented and tested....

  • Article
  • Open Access
39 Citations
10,824 Views
21 Pages

A Deep Reinforcement Learning Approach for Active SLAM

  • Julio A. Placed and
  • José A. Castellanos

25 November 2020

In this paper, we formulate the active SLAM paradigm in terms of model-free Deep Reinforcement Learning, embedding the traditional utility functions based on the Theory of Optimal Experimental Design in rewards, and therefore relaxing the intensive c...

  • Article
  • Open Access
17 Citations
6,865 Views
17 Pages

New Tacrine Analogs as Acetylcholinesterase Inhibitors — Theoretical Study with Chemometric Analysis

  • Paweł Szymański,
  • Robert Skibiński,
  • Tadeusz Inglot,
  • Marek Bajda,
  • Jakub Jończyk,
  • Barbara Malawska and
  • Elżbieta Mikiciuk-Olasik

4 March 2013

Computer simulations constitute the basis of the design and discovery of new drugs. This approach is not only significant with regards to finding new structures, but also for selecting the molecules with the highest probability of being useful in the...

  • Article
  • Open Access
151 Views
17 Pages

15 January 2026

Feed formulation is a typical multi-objective optimization problem that aims to minimize cost while satisfying multiple nutritional constraints. However, existing methods often suffer from limitations in handling nonlinear constraints, high-dimension...

  • Feature Paper
  • Review
  • Open Access
23 Citations
9,147 Views
24 Pages

Protein-based therapeutics are considered to be one of the most important classes of pharmaceuticals on the market. The growing need to prolong stability of high protein concentrations in liquid form has proven to be challenging. Therefore, significa...

  • Article
  • Open Access
5 Citations
5,472 Views
13 Pages

25 July 2023

In commercial non-adaptive active noise control (ANC) applications, an IIR filter structure is often used to reduce real-time computations. On the contrary, an FIR filter structure is usually preferred in the filter design phase because the FIR filte...

  • Article
  • Open Access
4 Citations
3,077 Views
17 Pages

11 February 2022

This paper presents a design synthesis method for robust controllers of active vehicle suspensions (AVSs). Various control techniques have been applied to the design of AVSs for enhancing ride comfort and handling performance of ground vehicles. Howe...

  • Article
  • Open Access
5 Citations
3,361 Views
23 Pages

14 September 2022

Cooperative perception is an important domain of autonomous driving that helps to improve road safety and traffic efficiency. Nevertheless, the large amount of sensed data and complicated algorithms make storage and computation for autonomous vehicle...

  • Article
  • Open Access
6 Citations
2,973 Views
16 Pages

27 October 2020

The relation of randomness and classical algorithmic computational complexity is a vast and deep subject by itself. However, already, 1-randomness sequences call for quantum mechanics in their realization. Thus, we propose to approach black hole&rsqu...

  • Feature Paper
  • Article
  • Open Access
2 Citations
2,379 Views
20 Pages

Multi-objective reliability-based design optimization (MORBDO) is an efficient tool for generating reliable Pareto-optimal (PO) solutions. However, generating such PO solutions requires many function evaluations for reliability analysis, thereby incr...

  • Article
  • Open Access
2,176 Views
16 Pages

31 October 2020

I formulate three basic biomedical/statistical assumptions that should ideally guide well-designed population prevalence studies of the present or past disease including COVID-19. On the basis of these assumptions alone, I compute several probability...

  • Review
  • Open Access
11 Citations
5,346 Views
25 Pages

Computational Modeling of Pharmaceuticals with an Emphasis on Crossing the Blood–Brain Barrier

  • Patrícia Alencar Alves,
  • Luana Cristina Camargo,
  • Gabriel Mendonça de Souza,
  • Márcia Renata Mortari and
  • Mauricio Homem-de-Mello

6 February 2025

The discovery and development of new pharmaceutical drugs is a costly, time-consuming, and highly manual process, with significant challenges in ensuring drug bioavailability at target sites. Computational techniques are highly employed in drug desig...

  • Article
  • Open Access
8 Citations
3,730 Views
19 Pages

Efficient Distributed Method for NLOS Cooperative Localization in WSNs

  • Shiwa Chen,
  • Jianyun Zhang,
  • Yunxiang Mao,
  • Chengcheng Xu and
  • Yu Gu

7 March 2019

The accuracy of cooperative localization can be severely degraded in non-line-of-sight (NLOS) environments. Although most existing approaches modify models to alleviate NLOS impact, computational speed does not satisfy practical applications. In this...

  • Article
  • Open Access
661 Views
24 Pages

25 September 2025

To obtain propellant formulations with superior comprehensive and robustness performance, the study establishes a multi-objective optimization model that accounts for uncertainties. The model adopts a bi-layer structure. The inner layer computes perf...

  • Article
  • Open Access
11 Citations
3,129 Views
23 Pages

16 July 2022

This paper presents the dynamic formulation of an artificial-muscle-driven and computed-muscle–force control for the planar locomotion of a snake robot. The snake robot uses a series of antagonistic pneumatic artificial muscles, assembled at th...

  • Review
  • Open Access
16 Citations
10,303 Views
21 Pages

Stray Load Loss Valuation in Electrical Transformers: A Review

  • Bonginkosi A. Thango and
  • Pitshou N. Bokoro

23 March 2022

The electricity production opus in South Africa has transformed over the last few years from predominantly coal power generation to a blend of renewable energy generation. The necessity emerges to ascertain whether electrical transformer design philo...

  • Article
  • Open Access
1,708 Views
15 Pages

The welded beam design problem represents a real-world engineering challenge in structural optimization. The objective is to determine the optimal dimensions of a steel beam and weld length to minimize cost while satisfying constraints related to she...

  • Article
  • Open Access
58 Citations
3,953 Views
16 Pages

Optimal Design of Hierarchical Cloud-Fog&Edge Computing Networks with Caching

  • Xiaoqian Fan,
  • Haina Zheng,
  • Ruihong Jiang and
  • Jinyu Zhang

12 March 2020

This paper investigates the optimal design of a hierarchical cloud-fog&edge computing (FEC) network, which consists of three tiers, i.e., the cloud tier, the fog&edge tier, and the device tier. The device in the device tier processes its task...

  • Article
  • Open Access
7 Citations
1,932 Views
19 Pages

29 June 2023

Mobile edge computing has been an important computing paradigm for providing delay-sensitive and computation-intensive services to mobile users. In this paper, we study the problem of the joint optimization of task assignment and energy management in...

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