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  • Article
  • Open Access
4 Citations
3,382 Views
19 Pages

30 December 2021

Variant pairs have an indispensable function on mechanical properties such as low impact toughness. Therefore, it was assumed that they would also affect the HER (Hole Expansion Ratio, an indicator to evaluate stretch flanging performance). To clarif...

(This article belongs to the Topic Metallurgical and Materials Engineering)
  • Article
  • Open Access
8 Citations
3,684 Views
12 Pages

5 November 2022

The mixed structure of lath bainite and martensite was obtained by isothermal transformation tests at 698 K, 673 K and 623 K in ultra-high-strength steel. The interweaving mode of lath bainite and martensite was revealed by colored metallography and...

(This article belongs to the Section Metal Casting, Forming and Heat Treatment)
  • Article
  • Open Access
1,514 Views
19 Pages

SARS-CoV-2 remains a severe threat to worldwide public health, particularly as the virus continues to evolve and diversify into variants of concern (VOCs). Among these VOCs, Omicron variants exhibit unique phenotypic traits, such as immune evasion, t...

  • Article
  • Open Access
2 Citations
1,724 Views
13 Pages

Deciphering the Causative Role of a Novel APC Gene Variant in Attenuated Familial Adenomatous Polyposis Using Germline DNA-RNA Paired Testing

  • Giovanna Forte,
  • Candida Fasano,
  • Matteo Iacoviello,
  • Valentina Grossi and ,
  • Martina Lepore Signorile,
  • Katia De Marco,
  • Paola Sanese,
  • Antonia Lucia Buonadonna,
  • Andrea Manghisi and
  • Cristiano Simone
  • + 7 authors+ 2 authors

Background/Objectives: Familial adenomatous polyposis (FAP) is an autosomal dominant disorder caused by pathogenic variants in the adenomatous polyposis coli (APC) gene. Its attenuated form (AFAP) is characterized by fewer colorectal polyps and later...

(This article belongs to the Special Issue Advanced Cancer Diagnosis and Treatment: Third Edition)
  • Article
  • Open Access
3 Citations
1,251 Views
36 Pages

7 March 2026

Anatomical variants are observed on paired body sides, yet many prevalence studies—particularly those based on osteological collections—report only right- and left-side frequencies without specifying whether findings occur bilaterally in...

(This article belongs to the Section Biostatistics)
  • Article
  • Open Access
3 Citations
2,860 Views
11 Pages

A Security-Mediated Encryption Scheme Based on ElGamal Variant

  • Boon Chian Tea,
  • Muhammad Rezal Kamel Ariffin,
  • Amir Hamzah Abd. Ghafar and
  • Muhammad Asyraf Asbullah

20 October 2021

Boneh et al. introduced mediated RSA (mRSA) in 2001 in an attempt to achieve faster key revocation for medium-sized organizations via the involvement of a security mediator (SEM) as a semi-trusted third party to provide partial ciphertext decryption...

(This article belongs to the Special Issue Mathematics Cryptography and Information Security 2021)
  • Article
  • Open Access
11 Citations
3,960 Views
19 Pages

24 February 2022

The SARS-CoV-2 Delta variant is emerging as a globally dominant strain. Its rapid spread and high infection rate are attributed to a mutation in the spike protein of SARS-CoV-2 allowing for the virus to invade human cells much faster and with an incr...

(This article belongs to the Special Issue An Interdisciplinary Approach to Virology Research)
  • Article
  • Open Access
6 Citations
3,560 Views
9 Pages

Genotype Pattern Mining for Pairs of Interacting Variants Underlying Digenic Traits

  • Atsuko Okazaki,
  • Sukanya Horpaopan,
  • Qingrun Zhang,
  • Matthew Randesi and
  • Jurg Ott

28 July 2021

Some genetic diseases (“digenic traits”) are due to the interaction between two DNA variants, which presumably reflects biochemical interactions. For example, certain forms of Retinitis Pigmentosa, a type of blindness, occur in the presence of two mu...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1 Citations
2,999 Views
12 Pages

Statistical Mechanics Metrics in Pairing and Parsing In Silico and Phenotypic Data of a Novel Genetic NFκB1 (c.T638A) Variant

  • Eman N. Chaudhri,
  • Jessica M. Abbott,
  • Naeyma N. Islam,
  • Caleb A. Weber and ,
  • Mathew A. Coban,
  • Ahmet Bilgili,
  • Jacqueline D. Squire,
  • Sarah Mantia,
  • Klaas J. Wierenga and
  • Thomas R. Caulfield
  • + 5 authors+ 0 author

24 September 2023

(1) Background: Mutations in NFκB1, a transcriptional regulator of immunomodulating proteins, are a known cause of inborn errors of immunity. Our proband is a 22-year-old male with a diagnosis of common variable immunodeficiency (CVID), cytopen...

(This article belongs to the Special Issue Genetic Basis of Autoimmune Diseases)
  • Article
  • Open Access
8 Citations
3,816 Views
11 Pages

Morphology and Crystallography Analyses of HSLA Steels with Hardenability Enhanced by Tailored C–Ni Collocation

  • Zhipeng Liu,
  • Yishuang Yu,
  • Jie Yang,
  • Zhiquan Wang and ,
  • Hui Guo and
  • Chengjia Shang
  • + 1 author+ 0 author

24 December 2021

High hardenability is of great importance to ultra-heavy steel plates and can be achieved by tailoring the composition of steel. In this study, the continuous cooling transformation (CCT) curves of two high-strength low-alloy (HSLA) steels (0.16C-0.9...

(This article belongs to the Special Issue Microstructural Characterization of Metallic Materials)
  • Review
  • Open Access
160 Citations
22,870 Views
22 Pages

The Spectrum of PAX6 Mutations and Genotype-Phenotype Correlations in the Eye

  • Dulce Lima Cunha,
  • Gavin Arno,
  • Marta Corton and
  • Mariya Moosajee

17 December 2019

The transcription factor PAX6 is essential in ocular development in vertebrates, being considered the master regulator of the eye. During eye development, it is essential for the correct patterning and formation of the multi-layered optic cup and it...

(This article belongs to the Special Issue Recent Advances in Inherited Eye Disease)
  • Feature Paper
  • Letter
  • Open Access
46 Citations
26,141 Views
65 Pages

Organocatalysis: Fundamentals and Comparisons to Metal and Enzyme Catalysis

  • Pierre Vogel,
  • Yu-hong Lam,
  • Adam Simon and
  • Kendall N. Houk

26 August 2016

Catalysis fulfills the promise that high-yielding chemical transformations will require little energy and produce no toxic waste. This message is carried by the study of the evolution of molecular catalysis of some of the most important reactions in...

(This article belongs to the Special Issue Metal-free Organocatalysis)
  • Communication
  • Open Access
3 Citations
2,274 Views
9 Pages

Unraveling the Mechanism of Toughness Fluctuation in Ultra-High-Strength Casing from the Perspective of Crystallography

  • Zhan Gao,
  • Xiaoming Dong,
  • Jieru Yu,
  • Junjie Tang and ,
  • Yishuang Yu,
  • Liangliang Wei,
  • Shilong Liu and
  • Xuejun Jin
  • + 3 authors+ 0 author

7 February 2024

The microstructure and impact toughness in an ultra-high-strength casing were investigated, attempting to reveal the reason for toughness fluctuations along the casing in terms of crystallography. The morphological structures at the head of the casin...

(This article belongs to the Special Issue Design, Preparation and Properties of High Performance Steels)
  • Article
  • Open Access
2 Citations
2,790 Views
17 Pages

14 May 2024

A Fe-30.5wt%Ni-0.155wt%C alloy was annealed at two different temperatures to produce two different austenite grain sizes. In the coarse-grained specimen, hierarchical configurations of variants are formed and carefully analyzed using EBSD. These typi...

(This article belongs to the Section Crystalline Metals and Alloys)
  • Article
  • Open Access
3 Citations
2,123 Views
13 Pages

Ramp Sequence May Explain Synonymous Variant Association with Alzheimer’s Disease in the Paired Immunoglobulin-like Type 2 Receptor Alpha (PILRA)

  • Justin B. Miller,
  • J. Anthony Brandon,
  • Lauren M. Harmon,
  • Hady W. Sabra and ,
  • Chloe C. Lucido,
  • Josue D. Gonzalez Murcia,
  • Kayla A. Nations,
  • Samuel H. Payne,
  • Mark T. W. Ebbert and
  • Perry G. Ridge
  • + 6 authors+ 1 author

Background: The synonymous variant NC_000007.14:g.100373690T>C (rs2405442:T>C) in the Paired Immunoglobulin-like Type 2 Receptor Alpha (PILRA) gene was previously associated with decreased risk for Alzheimer’s disease (AD) in genome-wide...

(This article belongs to the Section Neurobiology and Clinical Neuroscience)
  • Article
  • Open Access
11 Citations
5,531 Views
14 Pages

26 August 2020

MicroRNAs (or miRNAs) are short nucleotide sequences (~17–22 bp long) that play important roles in gene regulation through targeting genes in the 3′untranslated regions (UTRs). Variants located in genomic regions might have different biol...

(This article belongs to the Section Technologies and Resources for Genetics)
  • Article
  • Open Access
430 Views
12 Pages

The Significance of Somatic Variants Involved in the Development of Pancreatic Cancer in Patients with HBOC-Associated Germline Variants

  • Koki Uchiyama,
  • Hinano Nishikubo,
  • Tomoya Sano,
  • Yukina Furukawa and ,
  • Dongheng Ma,
  • Daiki Imanishi,
  • Takemi Ishidate,
  • Hongdong Gao,
  • Canfeng Fan and
  • Masakazu Yashiro
  • + 5 authors+ 0 author

18 September 2026

Background: Hereditary cancer predisposition syndromes show a high risk of cancer development with germline pathogenic variants. Organ-specific surveillance has been recommended according to the causative gene. However, even among carriers of the sam...

(This article belongs to the Special Issue Computational Genomics and Bioinformatics of Cancer)
  • Article
  • Open Access
1,629 Views
14 Pages

Exhaustive Variant Interaction Analysis Using Multifactor Dimensionality Reduction

  • Gonzalo Gómez-Sánchez,
  • Lorena Alonso,
  • Miguel Ángel Pérez,
  • Ignasi Morán and ,
  • David Torrents and
  • Josep Ll. Berral
  • + 1 author+ 0 author

13 June 2024

One of the main goals of human genetics is to understand the connections between genomic variation and the predisposition to develop a complex disorder. These disease–variant associations are usually studied in a single independent manner, disr...

(This article belongs to the Special Issue Advances in Bioinformatics and Biomedical Engineering)
  • Article
  • Open Access
16 Citations
5,512 Views
16 Pages

Genetic Variants Detected Using Cell-Free DNA from Blood and Tumor Samples in Patients with Inflammatory Breast Cancer

  • Jennifer S. Winn,
  • Zachary Hasse,
  • Michael Slifker,
  • Jianming Pei and ,
  • Sebastian M. Arisi-Fernandez,
  • Jacqueline N. Talarchek,
  • Elias Obeid,
  • Donald A. Baldwin,
  • Yulan Gong and
  • Sandra V. Fernandez
  • + 8 authors+ 3 authors

14 February 2020

We studied genomic alterations in 19 inflammatory breast cancer (IBC) patients with advanced disease using samples of tissue and paired blood serum or plasma (cell-free DNA, cfDNA) by targeted next generation sequencing (NGS). At diagnosis, the disea...

(This article belongs to the Section Molecular Oncology)
  • Article
  • Open Access
5 Citations
2,270 Views
14 Pages

23 August 2023

Sporadic Alzheimer’s disease (AD) is a polygenic neurodegenerative disorder. Single-nucleotide polymorphisms (SNPs) in multiple genes (e.g., CLU and ABCA7) have been associated with AD. However, none of them were characterized as causal variant...

(This article belongs to the Section Neurogenomics)
  • Article
  • Open Access
5 Citations
4,578 Views
11 Pages

A Rare Variant in ERF (rs144812092) Predisposes to Prostate and Bladder Cancers in an Extended Pedigree

  • Lisa Anne Cannon-Albright,
  • Craig Carl Teerlink,
  • Jeff Stevens,
  • Franklin W. Huang and ,
  • Csilla Sipeky,
  • Johanna Schleutker,
  • Rolando Hernandez,
  • Julio Facelli,
  • Neeraj Agarwal and
  • Donald L. Trump
  • + 5 authors+ 0 author

15 May 2021

Pairs of related bladder cancer cases who belong to pedigrees with an excess of bladder cancer were sequenced to identify rare, shared variants as candidate predisposition variants. Candidate variants were tested for association with bladder cancer r...

(This article belongs to the Special Issue Familial Cancer and Germline Genetics)
  • Article
  • Open Access
3,163 Views
26 Pages

27 January 2025

A modified carbide-free bainite (CFB) steel has been developed, building on existing alloys for compatibility with commercial continuous annealing lines (CALs), featuring a low austenitization temperature and short overaging time. The microstructural...

(This article belongs to the Special Issue Phase Transformation and Softening Mechanisms of Metals and Alloys during Thermomechanical Processing)
  • Article
  • Open Access
2 Citations
3,552 Views
20 Pages

Function Similarity Using Family Context

  • Paul Black,
  • Iqbal Gondal,
  • Peter Vamplew and
  • Arun Lakhotia

Finding changed and similar functions between a pair of binaries is an important problem in malware attribution and for the identification of new malware capabilities. This paper presents a new technique called Function Similarity using Family Contex...

(This article belongs to the Section Computer Science & Engineering)
  • Article
  • Open Access
5 Citations
5,099 Views
10 Pages

Restoration of Normal NF1 Function with Antisense Morpholino Treatment of Recurrent Pathogenic Patient-Specific Variant c.1466A>G; p.Y489C

  • Elias K. Awad,
  • Marc Moore,
  • Hui Liu,
  • Lukasz Ciszewski and ,
  • Laura Lambert,
  • Bruce R. Korf,
  • Linda Popplewell,
  • Robert A. Kesterson and
  • Deeann Wallis
  • + 4 authors+ 0 author

7 December 2021

Neurofibromatosis type 1 (NF1) is an autosomal dominant genetic disorder with almost 3000 different disease-causing variants within the NF1 gene identified. Up to 44% of these variants cause splicing errors to occur within pre-mRNA. A recurrent varia...

(This article belongs to the Section Methodology, Drug and Device Discovery)
  • Article
  • Open Access
5 Citations
4,369 Views
13 Pages

Whole-Exome Sequencing Reveals High Mutational Concordance between Primary and Matched Recurrent Triple-Negative Breast Cancers

  • Jaspreet Kaur,
  • Darshan S. Chandrashekar,
  • Zsuzsanna Varga,
  • Bettina Sobottka and ,
  • Emiel Janssen,
  • Khanjan Gandhi,
  • Jeanne Kowalski,
  • Umay Kiraz,
  • Sooryanarayana Varambally and
  • Ritu Aneja
  • + 5 authors+ 0 author

25 August 2023

Purpose: Triple-negative breast cancer (TNBC) is a molecularly complex and heterogeneous breast cancer subtype with distinct biological features and clinical behavior. Although TNBC is associated with an increased risk of metastasis and recurrence, t...

(This article belongs to the Special Issue Genomics of Breast Cancer)
  • Article
  • Open Access
5 Citations
2,753 Views
12 Pages

27 February 2023

A crystallographic analysis was conducted of the upper bainite nucleated at the austenite grain boundary in Fe-0.6C-0.8Mn-1.8Si (in mass %) steel by the EBSD analysis. The effect of the character of the prior austenite grain boundary (PAGB) on the fo...

(This article belongs to the Special Issue Microstructure and Properties of Steels and Other Structural Alloys)
  • Article
  • Open Access
68 Citations
8,513 Views
8 Pages

Estimation of Serial Interval and Reproduction Number to Quantify the Transmissibility of SARS-CoV-2 Omicron Variant in South Korea

  • Dasom Kim,
  • Sheikh Taslim Ali,
  • Sungchan Kim,
  • Jisoo Jo and ,
  • Jun-Sik Lim,
  • Sunmi Lee and
  • Sukhyun Ryu
  • + 2 authors+ 0 author

4 March 2022

The omicron variant (B.1.1.529) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was the predominant variant in South Korea from late January 2022. In this study, we aimed to report the early estimates of the serial interval distributi...

(This article belongs to the Special Issue Transmission Dynamics of Coronavirus Disease)
  • Article
  • Open Access
1 Citations
1,809 Views
32 Pages

Subtle Changes at the RBD/hACE2 Interface During SARS-CoV-2 Variant Evolution: A Molecular Dynamics Study

  • Aria Gheeraert,
  • Vincent Leroux,
  • Dominique Mias-Lucquin,
  • Yasaman Karami and ,
  • Laurent Vuillon,
  • Isaure Chauvot de Beauchêne,
  • Marie-Dominique Devignes,
  • Ivan Rivalta,
  • Bernard Maigret and
  • Laurent Chaloin
  • + 5 authors+ 0 author

7 April 2025

The SARS-CoV-2 Omicron variants show different behavior compared to the previous variants, especially with respect to the Delta variant, which promotes a lower morbidity despite being much more contagious. In this perspective, we performed molecular...

(This article belongs to the Special Issue Genetic and Structural Analyses of Coronaviruses: Insights into SARS-CoV-2 and Beyond)
  • Article
  • Open Access
3 Citations
2,597 Views
14 Pages

High-Risk Pedigree Study Identifies LRBA (rs62346982) as a Likely Predisposition Variant for Prostate Cancer

  • Lisa A. Cannon-Albright,
  • Jeff Stevens,
  • Julio C. Facelli,
  • Craig C. Teerlink and ,
  • Kristina Allen-Brady and
  • Neeraj Agarwal
  • + 1 author+ 0 author

31 March 2023

There is evidence for contribution of inherited factors to prostate cancer, and more specifically to lethal prostate cancer, but few responsible genes/variants have been identified. We examined genetic sequence data for 51 affected cousin pairs who e...

  • Article
  • Open Access
6 Citations
4,354 Views
19 Pages

RASAL1 and ROS1 Gene Variants in Hereditary Breast Cancer

  • Federica Isidori,
  • Isotta Bozzarelli,
  • Simona Ferrari,
  • Lea Godino and ,
  • Giovanni Innella,
  • Daniela Turchetti and
  • Elena Bonora
  • + 2 authors+ 0 author

7 September 2020

Breast cancer (BC) is the second leading cause of death in women. BC patients with family history or clinical features suggestive of inherited predisposition are candidate to genetic testing to determine whether a hereditary cancer syndrome is presen...

  • Article
  • Open Access
6 Citations
2,582 Views
12 Pages

Examining the Diagnostic Yield of Tumour Testing and Qualifying Germline Concordance for Hereditary Cancer Variants in Patients with High-Grade Serous Carcinoma

  • Emily A. Goebel,
  • Jennifer Kerkhof,
  • Oleksandra Dzyubak,
  • C. Meg McLachlin and ,
  • Jacob McGee and
  • Bekim Sadikovic
  • + 1 author+ 0 author

6 August 2022

Despite advances in treatment, prognosis for most patients with high-grade serous carcinoma (HGSC) remains poor. Genomic alterations in the homologous recombination (HR) pathway are used for cancer risk assessment and render tumours sensitive to plat...

(This article belongs to the Special Issue Molecular Biomarkers of Solid Tumors)
  • Article
  • Open Access
4 Citations
5,271 Views
18 Pages

Practical Grammar Compression Based on Maximal Repeats

  • Isamu Furuya,
  • Takuya Takagi,
  • Yuto Nakashima,
  • Shunsuke Inenaga and ,
  • Hideo Bannai and
  • Takuya Kida
  • + 1 author+ 0 author

23 April 2020

This study presents an analysis of RePair, which is a grammar compression algorithm known for its simple scheme, while also being practically effective. First, we show that the main process of RePair, that is, the step by step substitution of the mos...

(This article belongs to the Section Databases and Data Structures)
  • Article
  • Open Access
3 Citations
2,657 Views
14 Pages

A Rare Variant in MDH2 (rs111879470) Is Associated with Predisposition to Recurrent Breast Cancer in an Extended High-Risk Pedigree

  • Lisa A. Cannon-Albright,
  • Jeff Stevens,
  • Craig C. Teerlink,
  • Julio C. Facelli and ,
  • Kristina Allen-Brady and
  • Alana L. Welm
  • + 1 author+ 0 author

15 December 2023

A significant fraction of breast cancer recurs, with lethal outcome, but specific genetic variants responsible have yet to be identified. Five cousin pairs with recurrent breast cancer from pedigrees with a statistical excess of recurrent breast canc...

(This article belongs to the Section Cancer Epidemiology and Prevention)
  • Article
  • Open Access
4 Citations
3,046 Views
20 Pages

Somatic DNA Variants in Epilepsy Surgery Brain Samples from Patients with Lesional Epilepsy

  • Jana Marie Schwarz,
  • Lena-Luise Becker,
  • Monika Wahle,
  • Jessica Faßbender and ,
  • Ulrich-Wilhelm Thomale,
  • Anna Tietze,
  • Susanne Morales-Gonzalez,
  • Ellen Knierim,
  • Markus Schuelke and
  • Angela M. Kaindl
  • + 5 authors+ 0 author

Epilepsy affects 50 million people worldwide and is drug-resistant in approximately one-third of cases. Even when a structural lesion is identified as the epileptogenic focus, understanding the underlying genetic causes is crucial to guide both couns...

(This article belongs to the Special Issue Epilepsy: From Molecular Basis to Therapy)
  • Article
  • Open Access
3 Citations
2,519 Views
12 Pages

Possibility of Cell Block Specimens from Overnight-Stored Bile for Next-Generation Sequencing of Cholangiocarcinoma

  • Mitsuru Okuno,
  • Tomohiro Kanayama,
  • Keisuke Iwata,
  • Takuji Tanaka and ,
  • Hiroyuki Tomita,
  • Yuhei Iwasa,
  • Yohei Shirakami,
  • Naoki Watanabe,
  • Tsuyoshi Mukai and
  • Masahito Shimizu
  • + 6 authors+ 1 author

28 May 2024

The identification of anticancer therapies using next-generation sequencing (NGS) is necessary for the treatment of cholangiocarcinoma. NGS can be easily performed when cell blocks (CB) are obtained from bile stored overnight. We compared NGS results...

(This article belongs to the Special Issue Current Status and Future Challenges of Liquid Biopsy)
  • Article
  • Open Access
3 Citations
2,209 Views
18 Pages

On the Boundary of Exploratory Genomics and Translation in Sequential Glioblastoma

  • Marton Tompa,
  • Bence Galik,
  • Peter Urban,
  • Bela Istvan Kajtar and ,
  • Zoltan Kraboth,
  • Attila Gyenesei,
  • Attila Miseta and
  • Bernadette Kalman
  • + 3 authors+ 0 author

OMICS methods brought significant advancements to the understanding of tumor cell biology, which transformed the treatment and prognosis of several cancers. Clinical practice and outcomes, however, changed significantly less in the case of glioblasto...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
12 Citations
3,018 Views
15 Pages

Genome Sequencing and Transcriptome Profiling in Twins Discordant for Mayer-Rokitansky-Küster-Hauser Syndrome

  • Rebecca Buchert,
  • Elisabeth Schenk,
  • Thomas Hentrich,
  • Nico Weber and ,
  • Katharina Rall,
  • Marc Sturm,
  • Oliver Kohlbacher,
  • André Koch,
  • Olaf Riess and
  • Julia M. Schulze-Hentrich
  • + 6 authors+ 1 author

23 September 2022

To identify potential genetic causes for Mayer-Rokitansky-Küster-Hauser syndrome (MRKH), we analyzed blood and rudimentary uterine tissue of 5 MRKH discordant monozygotic twin pairs. Assuming that a variant solely identified in the affected twin...

(This article belongs to the Special Issue Management of Complex Female Genital Malformations)
  • Article
  • Open Access
2 Citations
3,423 Views
10 Pages

13 January 2021

Congenital heart disease (CHD) and palatal anomalies (PA), are among the most common characteristics of 22q11.2 deletion syndrome (22q11.2DS), but they show incomplete penetrance, suggesting the presence of additional factors. The 22q11.2 deleted reg...

(This article belongs to the Special Issue 22q11.2 Deletion Syndrome)
  • Article
  • Open Access
25 Citations
7,381 Views
18 Pages

A Single Synonymous Variant (c.354G>A [p.P118P]) in ADAMTS13 Confers Enhanced Specific Activity

  • Ryan Hunt,
  • Gaya Hettiarachchi,
  • Upendra Katneni,
  • Nancy Hernandez and ,
  • David Holcomb,
  • Jacob Kames,
  • Redab Alnifaidy,
  • Brian Lin,
  • Nobuko Hamasaki-Katagiri and
  • Chava Kimchi-Sarfaty
  • + 16 authors+ 11 authors

15 November 2019

Synonymous variants within coding regions may influence protein expression and function. We have previously reported increased protein expression levels ex vivo (~120% in comparison to wild-type) from a synonymous polymorphism variant, c.354G>A [p...

(This article belongs to the Collection Feature Papers in “Molecular Biology”)
  • Communication
  • Open Access
11 Citations
11,890 Views
16 Pages

Use of Lateral Flow Immunoassay to Characterize SARS-CoV-2 RBD-Specific Antibodies and Their Ability to React with the UK, SA and BR P.1 Variant RBDs

  • Enqing Tan,
  • Erica Frew,
  • Jeff Cooper,
  • John Humphrey and ,
  • Matthew Holden,
  • Amanda Restell Mand,
  • Jun Li,
  • Shaya Anderson,
  • Ming Bi and
  • Shelly Barry
  • + 9 authors+ 4 authors

Identifying anti-spike antibodies that exhibit strong neutralizing activity against current dominant circulating variants, and antibodies that are escaped by these variants, has important implications in the development of therapeutic and diagnostic...

(This article belongs to the Section Diagnostic Microbiology and Infectious Disease)
  • Article
  • Open Access
563 Views
22 Pages

Divergent Genomic Drivers in Benign-Appearing Lung Precursors and Their Synchronous Carcinomas

  • Jieun Lee,
  • Yuchae Jung,
  • Seung Yun Lee,
  • Ye Won Song and ,
  • Jongsun Jung,
  • Chan Kwon Park,
  • Young Jo Sa and
  • Tae-Jung Kim
  • + 3 authors+ 0 author

22 May 2026

Background/Objectives: How the histologically benign tier of lung preinvasive lesions—atypical adenomatous hyperplasia (AAH) and squamous dysplasia (SD)—relates genomically to its paired carcinoma is unclear. To identify early versus late...

(This article belongs to the Special Issue Genetic and Molecular Characterization of Lung Cancer)
  • Article
  • Open Access
11 Citations
4,721 Views
13 Pages

Development and Characterization of Phage Display-Derived Monoclonal Antibodies to the S2 Domain of Spike Proteins of Wild-Type SARS-CoV-2 and Multiple Variants

  • Ji Woong Kim,
  • Ah Hyun Cho,
  • Ha Gyeong Shin,
  • Sung Hoon Jang and ,
  • Su Yeon Cho,
  • Ye Rim Lee and
  • Sukmook Lee
  • + 2 authors+ 0 author

6 January 2023

The rapid emergence of new severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants has resulted in the ongoing global coronavirus disease 2019 (COVID-19) pandemic. Thus, the rapid development of a platform to detect a broad range of SAR...

(This article belongs to the Special Issue Biotechnological Applications of Phage and Phage-Derived Proteins 2022)
  • Article
  • Open Access
15 Citations
5,254 Views
18 Pages

Genetic code expansion has largely focused on the reassignment of amber stop codons to insert single copies of non-canonical amino acids (ncAAs) into proteins. Increasing effort has been directed at employing the set of aminoacyl tRNA synthetase (aaR...

(This article belongs to the Special Issue Expanding and Reprogramming the Genetic Code 2.0)
  • Article
  • Open Access
1 Citations
3,945 Views
11 Pages

CoVM2: Molecular Biological Data Integration of SARS-CoV-2 Proteins in a Macro-to-Micro Method

  • Hongjun Chen,
  • Xiaotian Hu,
  • Yanshi Hu,
  • Jiawen Zhou and
  • Ming Chen

2 August 2022

The COVID-19 pandemic has been a major public health event since 2020. Multiple variant strains of SARS-CoV-2, the causative agent of COVID-19, were detected based on the mutation sites in their sequences. These sequence mutations may lead to changes...

(This article belongs to the Special Issue State-of-the-Art Biophysics, Biochemistry and Molecular Biology in China)
  • Article
  • Open Access
7 Citations
5,146 Views
14 Pages

High-Throughput Screening of PAM-Flexible Cas9 Variants for Expanded Genome Editing in the Silkworm (Bombyx mori)

  • Le Sun,
  • Tong Zhang,
  • Xinhui Lan,
  • Na Zhang and ,
  • Ruolin Wang,
  • Sanyuan Ma,
  • Ping Zhao and
  • Qingyou Xia
  • + 3 authors+ 0 author

30 March 2024

Genome editing provides novel opportunities for the precise genome engineering of diverse organisms. Significant progress has been made in the development of genome-editing tools for Bombyx mori (B. mori) in recent years. Among these, CRISPR/Cas9, wh...

(This article belongs to the Section Insect Molecular Biology and Genomics)
  • Article
  • Open Access
3 Citations
2,124 Views
11 Pages

Clinical annotations for the actionable pharmacogenetic variants affecting the efficacy of cardiovascular drugs have been collected, yet their impacts on elderly patients with coronary artery disease (CAD) undergoing polypharmacy remain uncertain. We...

  • Article
  • Open Access
86 Views
15 Pages

Evidence of Epistatic Interactive Effects of HK1 and GCK Genes on Circulating Hemoglobin A1c Levels in Humans

  • Lihua Wang,
  • Joseph H. Lee,
  • Bharat Thyagarajan,
  • Anatoliy I. Yashin and ,
  • E. Warwick Daw,
  • Thomas T. Perls,
  • Kaare Christensen,
  • Joseph M. Zmuda,
  • Michael A. Province and
  • Ping An
  • + 5 authors+ 0 author

31 October 2026

Hemoglobin A1c (HbA1c), an important diagnostic biomarker for type 2 diabetes (T2D), is also associated with aging, cognitive performance, and mortality. To identify epistatic interactions, we assessed 133 known gene variants associated with HbA1c am...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Review
  • Open Access
3 Citations
3,457 Views
9 Pages

29 September 2021

Reinfection cases have been reported in some countries with clinical symptoms ranging from mild to severe. In addition to clinical diagnosis, virus genome sequence from the first and second infection has to be confirmed to either belong to separate c...

(This article belongs to the Special Issue Emerging and Re-emerging Viral Infectious Diseases)
  • Article
  • Open Access
20 Citations
4,912 Views
16 Pages

13 September 2022

In this work, the variant selection of martensite in a stainless maraging steel was investigated by electron backscattering diffraction and a new protocol of parent phase reconstruction. The reconstruction protocol enables digital austenite reversion...

(This article belongs to the Section Structural Integrity of Metals)
  • Article
  • Open Access
9 Citations
3,235 Views
17 Pages

8 January 2022

This paper consists of two parts. The first one contains a description and methodology of the composite material used as friction material in clutches. Four variants of such material, differing in the type of carbon additive (the elemental graphite,...

(This article belongs to the Special Issue Use of Modern Materials in Technological Processes Accompanied by Frictional Heating)

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