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Biomolecules

Biomolecules is an international, peer-reviewed, open access journal on structures and functions of bioactive and biogenic substances, molecular mechanisms with biological and medical implications as well as biomaterials and their applications, published monthly online by MDPI.

Indexed in PubMed | Quartile Ranking JCR - Q1 (Biochemistry and Molecular Biology)

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All Articles (12,687)

A decrease in pH can affect the biochemical properties of a sulfate reduction system, but the stress responses to such pH fluctuations and acid-adaptive mechanisms of the microorganisms remain incompletely understood. Here, we compared the sulfate (SO42−) reduction performance of a sulfate-reducing consortium (SRB system) and a pure Desulfovibrio sp. system (Des. system, control) under pH 7.0, 5.5, and 5.0 via batch experiments. A key novelty is the integration of microbial physiology and metagenomics to reveal adaptive mechanisms: the Des. system showed significant inhibition of growth and sulfate reduction with decreasing pH, while the SRB system maintained superior SO42− removal efficiency through three synergistic adjustments: (1) physiological regulation (enhanced H+-ATPase activity, stress protein production, and cell membrane cyclopropane fatty acid content); (2) microbial community restructuring (enrichment of acid-resistant Bacillus and Clostridium); and (3) functional gene upregulation (sulfate import, dissimilar sulfate reduction, sulfide oxidation, and SOx system-related genes, p < 0.05). This study links physiological responses to metagenomic functional shifts under acid stress, providing critical theoretical support for applying sulfate-reducing consortia in acidic sulfate-containing wastewater remediation.

16 March 2026

The physiological responses of microorganisms in Des. and SRB systems under different pH conditions (n = 3, mean ± SD; different letters indicate significant differences at p &lt; 0.05). (a) Cell membrane permeability; (b) H+-ATPase activity; (c) Intracellular ATP concentration; (d) The content of intracellular protein; (e) The content of capsular polysaccharide; (f) The unsaturation degree and carbon chain lengths of the cell membrane in SRB system; (g) The distribution of saturated fatty acids in SRB system; (h) The distribution of unsaturated fatty acids in SRB system.

Mitochondrial ROS in Retinal Neurodegeneration: Thresholds, Quality Control Failure, and Precision Therapeutic Windows

  • Snježana Kaštelan,
  • Antonela Gverović Antunica and
  • Mira Ivanković
  • + 8 authors

Mitochondrial reactive oxygen species (mtROS) play a dual role in retinal physiology, acting as essential redox signalling mediators under homeostatic conditions but driving oxidative damage and neurodegeneration once regulatory thresholds are exceeded. Owing to the exceptionally high energetic demands of retinal neurons and supporting cells, even subtle perturbations in mitochondrial redox balance can precipitate progressive retinal dysfunction. Increasing evidence indicates that retinal neurodegenerative diseases, including glaucoma, diabetic retinopathy (DR), age-related macular degeneration (AMD), and inherited optic neuropathies, are characterised not by uniform oxidative stress, but by disease- and stage-specific mtROS signatures shaped by mitochondrial quality control capacity. This review synthesises current insights into the sources, regulation, and signalling functions of mtROS in the retina, with particular emphasis on threshold-dependent redox transitions, reverse electron transport, and the progressive failure of mitochondrial quality control mechanisms, including mitophagy, mitochondrial dynamics, and redox-responsive transcriptional networks. The limitations of non-selective antioxidant strategies are critically examined, highlighting why indiscriminate ROS suppression has yielded limited clinical benefit. In contrast, emerging therapeutic approaches aimed at recalibrating mitochondrial redox homeostasis, rather than abolishing physiological signalling, are discussed in the context of disease stage, metabolic state, and mitochondrial competence. By integrating redox biology with mitochondrial quality control and precision medicine concepts, this review proposes a unifying framework in which retinal neurodegeneration is governed by regulated mtROS signalling and the progressive exhaustion of mitochondrial resilience. This model defines critical therapeutic windows for mitochondria-targeted intervention and provides a framework for biomarker-guided patient stratification.

16 March 2026

Disease-specific mtROS sources and signalling pathways in ocular neurodegeneration. The figure highlights the spatial and temporal distribution of mtROS across major ocular diseases, integrating complex I/III-derived ROS, lipid peroxidation burden, mitophagy failure, and neurovascular stress. It contrasts RGC-predominant vulnerability in glaucoma and LHON with RPE-centric oxidative injury in AMD and neurovascular disruption in DR. Together, these patterns illustrate how distinct pathological triggers converge on a common axis of mtROS amplification and mitochondrial quality control failure. mtROS: Mitochondrial reactive oxygen species; AMD: Age-related macular degeneration; DR: Diabetic retinopathy; LHON: Leber’s hereditary optic neuropathy; RPE: Retinal pigment epithelium; ETC: electron transport chain; OXPHOS: oxidative phosphorylation; RGCs: Retinal ganglion cells; PUFA: Polyunsaturated fatty acids.

Major trauma induces innate immune suppression, yet the underlying mechanisms are poorly understood. Resistin is an immunosuppressive molecule that is systemically elevated post-injury. However, its role in trauma-induced immune dysfunction and clinical outcomes is poorly defined. Here, we acquired blood samples from 147 adult trauma patients (≤1, 4–12, 48–72 h post-injury) and 95 burns patients (days 1, 3, 7, 14, 28 post-burn). We measured plasma resistin concentrations, studied resistin gene expression in peripheral blood mononuclear cells (PBMCs) and neutrophils, and measured resistin production by lipopolysaccharide (LPS)-challenged whole blood leukocytes. To identify potential novel triggers of resistin secretion by immune cells, we examined the effect that stimulation with mitochondrial-derived damage-associated molecular patterns (mtDAMPs) had on resistin production by neutrophils isolated from healthy donors. We also treated neutrophils, from healthy donors, and THP-1 cells with resistin prior to stimulation with Phorbol 12-myristate-13-acetate (PMA) or LPS to study its effects on reactive oxygen species (ROS) and cytokine production, respectively. Injured patients presented with significantly elevated circulating resistin concentrations and increased resistin gene expression in PBMCs and neutrophils. LPS and mtDAMP stimulation promoted resistin secretion by whole blood leukocytes and neutrophils. Plasma resistin concentrations were negatively associated with PMA-induced ROS generation by neutrophils, and LPS-induced cytokine production by monocytes. Resistin-treated THP-1 cells and neutrophils exhibited impaired functional responses upon secondary stimulation with LPS or PMA, respectively. Trauma patients who developed multiple organ dysfunction syndrome (MODS) presented with significantly elevated resistin concentrations, which at 48–72 h post-injury showed good performance as a predictor of post-traumatic MODS (AUROC, 0.796). Hyperresistinemia is an immediate and persistent feature of the inflammatory response to injury that may contribute to the development of innate immune dysfunction.

16 March 2026

Traumatic and thermal injury results in elevated circulating concentrations of resistin. (A) Comparison of resistin concentrations in platelet-free plasma collected from healthy controls (HCs) and major trauma patients at three post-injury timepoints (≤1, 4–12, and 48–72 h). ** p &lt; 0.005, **** p &lt; 0.0001 vs. HCs. The number of samples analysed are stated below each study time-point. (B) Repeated measures analyses comparing resistin concentrations in platelet-free plasma obtained from major trauma patients (n = 88) at three post-injury timepoints (≤1, 4–12, and 48–72 h). **** p &lt; 0.0001 vs. ≤1 h. (C) Comparison of resistin concentrations in platelet-free plasma collected from healthy controls (HCs) and thermally-injured patients at five post-burn timepoints (days 1, 3, 7, 14, and 28). ** p &lt; 0.005, **** p &lt; 0.0001 vs. HCs. The number of samples analysed are stated below each study time-point. (D) Repeated measures analyses comparing resistin concentrations in platelet-free plasma obtained from burns patients (n = 48) at days 1, 3, 7, 14, and 28 post-injury. a p &lt; 0.0005 vs. D1, b p &lt; 0.01 vs. D3, c p &lt; 0.0001 vs. D7, d p &lt; 0.0001 vs. D14.

In Situ XRPD Investigation of Relative Humidity-Induced Lattice Responses in Tetragonal Hen Egg-White Lysozyme

  • Marios Konstantopoulos,
  • Stamatina Kafetzi and
  • Irene Margiolaki
  • + 10 authors

Protein crystals are intrinsically hydrated systems, and their structural integrity is strongly influenced by environmental humidity. Understanding the effects of relative humidity (RH) variation on crystal stability is therefore essential for both fundamental research and applied studies. In this work, the structural response of tetragonal hen egg-white lysozyme (HEWL) to controlled RH variation was investigated using in situ X-ray powder diffraction (XRPD). Polycrystalline HEWL samples were subjected to systematic gradual dehydration and rehydration cycles, as well as to non-gradual RH variation protocols. Pawley analysis of the XRPD data enabled monitoring of the evolution of unit cell parameters and unit cell volume as a function of RH. Under all experimental conditions, the tetragonal polymorph (space group P43212; a = 79.105 (4) Å, c = 38.231 (2) Å) was preserved. RH variation induced smooth, continuous and anisotropic lattice changes, characterized by a decrease in the a (=b)-axis and a concomitant increase in the c-axis upon dehydration, while rehydration resulted in the opposite behavior. The overall magnitude of lattice variation remained limited (within ±2%), indicating a high degree of structural stability. Partial degradation of crystallinity was observed only after prolonged exposure to low RH levels. These findings demonstrate the remarkable structural resilience of tetragonal HEWL and highlight the effectiveness of in situ XRPD as a powerful tool for probing hydration-driven lattice responses in protein crystals under realistic environmental conditions.

15 March 2026

Optical microscopy images of representative HEWL polycrystalline samples: (a) Series 3, (b) Series 4 and (c) Series 5.

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Biomolecules - ISSN 2218-273X