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243 Results Found

  • Feature Paper
  • Article
  • Open Access
40 Citations
8,113 Views
12 Pages

Plant diseases caused by viral infection are affecting all major crops. Being an obligate intracellular organisms, chemical control of these pathogens is so far not applied in the field except to control the insect vectors of the viruses. Understandi...

(This article belongs to the Special Issue Proteomics in Plant–Environment Interactions)
  • Article
  • Open Access
1 Citations
997 Views
23 Pages

Time-Series Comparative Transcriptome Analyses of Two Potato Cultivars with Different Verticillium Wilt Resistance

  • Guoquan Fan,
  • Zhiguo Ren,
  • Yanling Gao,
  • Guili Di and ,
  • Peng Wang,
  • Shu Zhang,
  • Wei Zhang,
  • Min Tu,
  • Yin Li and
  • Shuxin Han
  • + 5 authors+ 0 author

21 December 2025

Comparative omics analysis offers one of the most direct and effective approaches to gain novel insights into crop traits, facilitating candidate gene identification and crop improvement. Verticillium dahliae causes one of the most globally devastati...

(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
  • Article
  • Open Access
10 Citations
3,718 Views
16 Pages

RNA-Seq Transcriptome Analysis of Potato with Differential Tolerance to Bentazone Herbicide

  • Jing Guo,
  • Xiuli Song,
  • Shiqi Sun,
  • Baihui Shao and ,
  • Bo Tao and
  • Lili Zhang
  • + 1 author+ 0 author

Potato (Solanum tuberosum), an important food crop worldwide, is threatened by broadleaf weeds. Bentazone is an effective herbicide for controlling weeds; however, as a photosynthesis inhibitor, it can also affect potato plants. Therefore, screening...

  • Article
  • Open Access
29 Citations
4,517 Views
19 Pages

Transcriptome and Metabolome Analyses Reflect the Molecular Mechanism of Drought Tolerance in Sweet Potato

  • Yumeng Yin,
  • Shouchen Qiao,
  • Zhihe Kang,
  • Feng Luo and ,
  • Qianqian Bian,
  • Guozheng Cao,
  • Guorui Zhao,
  • Zhihao Wu,
  • Guohong Yang and
  • Yufeng Yang
  • + 6 authors+ 1 author

24 January 2024

Sweet potato (Ipomoea batatas (L.) Lam.) is one of the most widely cultivated crops in the world, with outstanding stress tolerance, but drought stress can lead to a significant decrease in its yield. To reveal the response mechanism of sweet potato...

(This article belongs to the Section Plant Molecular Biology)
  • Article
  • Open Access
15 Citations
3,467 Views
21 Pages

A Genome-Wide View of the Transcriptome Dynamics of Fresh-Cut Potato Tubers

  • Li Wang,
  • Wanxing Wang,
  • Jianwei Shan,
  • Chengchen Li and ,
  • Haicui Suo,
  • Jitao Liu,
  • Kang An,
  • Xiaobo Li and
  • Xingyao Xiong
  • + 4 authors+ 0 author

10 January 2023

Fresh fruits and vegetable products are easily perishable during postharvest handling due to enzymatic browning reactions. This phenomenon has contributed to a significant loss of food. To reveal the physiological changes in fresh-cut potato tubers a...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
9 Citations
5,482 Views
15 Pages

Revealing Key Genes and Pathways in Potato Scab Disease Resistance through Transcriptome Analysis

  • Chuang Li,
  • Baoqi Yuan,
  • Chuan Zhang,
  • Qi Yao and ,
  • Hongxia He,
  • Qingfeng Wang,
  • Jinping Liang,
  • Nan Li,
  • Xu Zhu and
  • Zhongwei Wang
  • + 5 authors+ 0 author

28 January 2024

Potato scab, a global soil-borne disease caused by Streptomyces, is pivotal in developing resistant cultivars due to its complex resistance mechanisms. This study investigates the transcriptomic responses in potato to common scab using resistant vari...

(This article belongs to the Section Crop Breeding and Genetics)
  • Article
  • Open Access
3 Citations
2,545 Views
18 Pages

Genome and Transcriptome Analysis of NF-Y Transcription Factors in Sweet Potato under Salt Stress

  • Bei Liang,
  • Jiayun Wu,
  • Ye Chen,
  • Bei Wang and ,
  • Feiyan Gao,
  • Yongping Li and
  • Guopeng Zhu
  • + 2 authors+ 0 author

Nuclear factor Y (NF-Y) is a heterotrimeric complex composed of three unique subunits: NF-YA, NF-YB, and NF-YC. This transcription factor complex binds to the CCAAT box of eukaryotic promoters, playing a crucial role in various biological processes i...

(This article belongs to the Special Issue Horticultural Plants’ Response to Biotic and Abiotic Stresses)
  • Article
  • Open Access
12 Citations
3,962 Views
18 Pages

Combined Transcriptome and Metabolome Analysis Reveals Adaptive Defense Responses to DON Induction in Potato

  • Biao Zhao,
  • Hang Yu,
  • Dan Liu,
  • Jiaqi Wang and ,
  • Xu Feng,
  • Fumeng He,
  • Tianshuai Qi,
  • Chong Du,
  • Linlin Wang and
  • Fenglan Li
  • + 6 authors+ 1 author

Phytophthora infestans poses a serious threat to potato production, storage, and processing. Understanding plant immunity triggered by fungal elicitors is important for the effective control of plant diseases. However, the role of the potato stress r...

(This article belongs to the Special Issue Comparative Genomics and Functional Genomics Analysis of Horticulture Plants 2022)
  • Article
  • Open Access
15 Citations
4,088 Views
20 Pages

Transcriptome Analysis Reveals Novel Genes Potentially Involved in Tuberization in Potato

  • Meihua Zhang,
  • Hongju Jian,
  • Lina Shang,
  • Ke Wang and ,
  • Shiqi Wen,
  • Zihan Li,
  • Rongrong Liu,
  • Lijun Jia,
  • Zhenlin Huang and
  • Dianqiu Lyu
  • + 5 authors+ 0 author

11 March 2024

The formation and development of tubers, the primary edible and economic organ of potatoes, directly affect their yield and quality. The regulatory network and mechanism of tuberization have been preliminarily revealed in recent years, but plenty of...

(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
  • Article
  • Open Access
8 Citations
3,108 Views
30 Pages

Comprehensive Transcriptome and Proteome Analyses Reveal the Drought Responsive Gene Network in Potato Roots

  • Tianyuan Qin,
  • Yihao Wang,
  • Zhuanfang Pu,
  • Ningfan Shi and ,
  • Richard Dormatey,
  • Huiqiong Wang and
  • Chao Sun
  • + 2 authors+ 0 author

31 May 2024

The root system plays a decisive role in the growth and development of plants. The water requirement of a root system depends strongly on the plant species. Potatoes are an important food and vegetable crop grown worldwide, especially under irrigatio...

(This article belongs to the Topic Tolerance to Drought and Salt Stress in Plants, 2nd volume)
  • Article
  • Open Access
1,342 Views
16 Pages

Leaf color, as a key ornamental and quality trait in leafy vegetable sweet potato, is controlled by the coordinated regulation of multiple pigment metabolic pathways. To dissect the mechanisms underlying leaf color variation, the integrated transcrip...

(This article belongs to the Section Developmental Physiology, Biochemistry, and Molecular Biology)
  • Article
  • Open Access
1 Citations
849 Views
15 Pages

Comparative Transcriptome Analysis of Sprouting Capabilities of Sweet Potato Storage Roots with Low and High Virus Levels

  • Zhicheng Jiang,
  • Taifeng Du,
  • Yuanyuan Zhou,
  • Zhen Qin and ,
  • Aixian Li,
  • Qingmei Wang and
  • Fuyun Hou
  • + 2 authors+ 0 author

Sweet potato (Ipomoea batatas (L.) Lam.) is an important root crop in China, playing significant roles in ensuring national food security and increasing farmers’ income. The sprouting capability of sweet potato storage roots determines the qual...

(This article belongs to the Section Seed Science and Technology)
  • Article
  • Open Access
2 Citations
1,578 Views
16 Pages

Transcriptome Profiling Identifies Key Regulators of Tuber Skin Color in Potato

  • Boshu Li,
  • Shuo Wang,
  • Jun Hu,
  • Liping Jin and
  • Jianfei Xu

20 May 2025

The color of tuber skin exhibits remarkable diversity in potato (Solanum tuberosum L.) and is intricately associated with variance in anthocyanin accumulation across different varieties. The regulatory mechanisms governing this phenomenon are poorly...

(This article belongs to the Special Issue Genetics and Physiology of Tuber and Root Crops)
  • Article
  • Open Access
379 Views
15 Pages

Germplasm Screening and Transcriptome Profiling Identify Phenylpropanoid Biosynthesis-Related PAL Candidate Genes Associated with Freezing Tolerance in Potato

  • Yuwei Ge,
  • Qianqian Wang,
  • Yuying Fu,
  • Tingting Wang and ,
  • Huajun Liao and
  • Chongchong Yan
  • + 1 author+ 0 author

28 August 2026

Potato (Solanum tuberosum L.) seedlings are highly sensitive to freezing temperatures, which severely impairs growth and causes substantial losses in tuber yield and quality. This study aimed to screen freezing-tolerant potato germplasm accessions, i...

(This article belongs to the Special Issue Molecular Genomics for Plant Stress Resilience and Improvement)
  • Article
  • Open Access
1 Citations
1,638 Views
25 Pages

Comparative Transcriptome and Metabolome Profiling Revealed Molecular Cascade Events During the Enzymatic Browning of Potato Tubers After Cutting

  • Li Wang,
  • Jianwei Shan,
  • Jitao Liu,
  • Kang An and ,
  • Kun Yang,
  • Chengchen Li,
  • Xiaobo Li and
  • Xingyao Xiong
  • + 3 authors+ 0 author

13 June 2025

Enzymatic browning is a major issue in potato processing, causing a decline in both nutritional value and quality. Although there are numerous studies on the mechanism of enzymatic browning of potato tubers, few relevant reports are available on the...

(This article belongs to the Section Plant Development and Morphogenesis)
  • Article
  • Open Access
11 Citations
3,891 Views
17 Pages

Serial Transcriptome Analysis Reveals Genes Associated with Late Blight Resistance in Potato Cultivar Qingshu 9

  • Miaomiao He,
  • Yun Zhou,
  • Guangji Ye,
  • Jie Zheng and ,
  • Yuling Meng,
  • Jian Wang and
  • Weixing Shan
  • + 2 authors+ 0 author

25 September 2021

The late blight caused by Phytophthora infestans (P. infestans) has been a major constraint for worldwide sustainable potato production. Chinese potato cultivar Qingshu 9 has shown excellent field performance against late blight. To understand the me...

  • Article
  • Open Access
20 Citations
3,149 Views
17 Pages

Integrated Transcriptome and Metabolome Analyses Reveal Details of the Molecular Regulation of Resistance to Stem Nematode in Sweet Potato

  • Shouchen Qiao,
  • Jukui Ma,
  • Yannan Wang,
  • Jingwei Chen and ,
  • Zhihe Kang,
  • Qianqian Bian,
  • Jinjin Chen,
  • Yumeng Yin,
  • Guozheng Cao and
  • Yufeng Yang
  • + 8 authors+ 3 authors

22 May 2023

Stem nematode disease can seriously reduce the yield of sweet potato (Ipomoea batatas (L.) Lam). To explore resistance mechanism to stem nematode in sweet potato, transcriptomes and metabolomes were sequenced and compared between two sweet potato cul...

(This article belongs to the Section Plant Protection and Biotic Interactions)
  • Article
  • Open Access
14 Citations
4,765 Views
19 Pages

26 February 2019

Field co-infection of multiple viruses results in considerable losses in the yield and quality of storage roots in sweet potato. However, little is known about the molecular mechanisms underlying developmental disorders of sweet potato subjected to c...

(This article belongs to the Special Issue Plant Proteomic Research 2.0)
  • Article
  • Open Access
9 Citations
3,371 Views
20 Pages

Comparative Transcriptome Analysis of Deep-Rooting and Shallow-Rooting Potato (Solanum tuberosum L.) Genotypes under Drought Stress

  • Tianyuan Qin,
  • Chao Sun,
  • Ali Kazim,
  • Song Cui and ,
  • Yihao Wang,
  • Dormatey Richard,
  • Panfeng Yao,
  • Zhenzhen Bi,
  • Yuhui Liu and
  • Jiangping Bai
  • + 5 authors+ 0 author

3 August 2022

The selection and breeding of deep rooting and drought-tolerant varieties has become a promising approach for improving the yield and adaptability of potato (Solanum tuberosum L.) in arid and semiarid areas. Therefore, the discovery of root-developme...

  • Article
  • Open Access
4 Citations
2,397 Views
28 Pages

Integrated Transcriptome and Metabolome Analysis Provides Insights into the Low-Temperature Response in Sweet Potato (Ipomoea batatas L.)

  • Zhenlei Liu,
  • Jiaquan Pan,
  • Sitong Liu,
  • Zitong Yang and ,
  • Huan Zhang,
  • Tao Yu and
  • Shaozhen He
  • + 2 authors+ 0 author

28 July 2025

Background/Objectives: Sweet potato is a tropical and subtropical crop and its growth and yield are susceptible to low-temperature stress. However, the molecular mechanisms underlying the low temperature stress of sweetpotato are unknown. Methods: In...

(This article belongs to the Special Issue Genetic and Functional Genomics Insights into the Genetic Improvement of Stress Resistance in Economic Crops)
  • Communication
  • Open Access
9 Citations
2,688 Views
16 Pages

13 November 2023

M. incognita, a root-knot nematode (RKN), infects the roots of several important food crops, including sweet potato (Ipomoea batatas Lam.), and severely reduces yields. However, the molecular mechanisms underlying infection remain unclear. Previously...

(This article belongs to the Special Issue Genetic Regulation of Biotic Stress Responses)
  • Article
  • Open Access
390 Views
19 Pages

11 September 2026

Background/Objectives: Soil salinization threatens global potato production, yet the molecular mechanisms underlying salt tolerance remain poorly understood. This study aimed to elucidate dynamic transcriptomic responses to salt stress, identify key...

(This article belongs to the Section Genes & Environments)
  • Article
  • Open Access
3 Citations
3,295 Views
24 Pages

Comparative Transcriptome Profiling Reveals Potential Candidate Genes, Transcription Factors, and Biosynthetic Pathways for Phosphite Response in Potato (Solanum tuberosum L.)

  • Richard Dormatey,
  • Tianyuan Qin,
  • Yihao Wang,
  • Benjamin Karikari and ,
  • Simon Dontoro Dekomah,
  • Youfang Fan,
  • Zhenzhen Bi,
  • Panfeng Yao,
  • Kazim Ali and
  • Jiangping Bai
  • + 6 authors+ 1 author

1 August 2022

The study was conducted with C31 and C80 genotypes of the potato (Solanum tuberosum L.), which are tolerant and susceptible to phosphite (Phi, H2PO3), respectively. To decipher the molecular mechanisms underlying tolerance and susceptibility to Phi i...

(This article belongs to the Special Issue Genetic Diversity of Plant Tolerance to Environmental Restraints)
  • Article
  • Open Access
1 Citations
2,517 Views
27 Pages

Transcriptome Insights into Carbohydrate Metabolism and Frying Quality Traits in Waxy and Mealy Potatoes

  • Jeong-Jin Choi,
  • Do-Hee Kwon,
  • Jang-Gyu Choi,
  • Gyu-Bin Lee and ,
  • Jae-Youn Yi,
  • Hui-Tae Lee,
  • Hong-Sik Won,
  • Young-Eun Park,
  • Yong-Ik Jin and
  • Kwang-Soo Cho
  • + 6 authors+ 1 author

11 June 2025

The fried potato market is a high-value industry, exceeding USD 55 billion and still growing. However, the genetic mechanisms underlying key frying traits remain poorly understood. In this study, we conducted a transcriptome analysis on two types of...

(This article belongs to the Section Crop Breeding and Genetics)
  • Article
  • Open Access
5 Citations
2,215 Views
13 Pages

Melatonin-Induced Transcriptome Variation of Sweet Potato Under Heat Stress

  • Mengzhao Wang,
  • Yang Zhou,
  • Bei Liang,
  • Sunjeet Kumar and ,
  • Wenjie Zhao,
  • Tianjia Liu,
  • Yongping Li and
  • Guopeng Zhu
  • + 3 authors+ 0 author

1 February 2025

Melatonin (MT) has been widely recognized for its ability to mitigate the effects of abiotic stress and regulate plant development. In this study, we investigated the role of exogenous MT in enhancing heat tolerance in sweet potato, with a particular...

(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
  • Article
  • Open Access
5 Citations
3,930 Views
17 Pages

Integrating Genome-Wide Association Study with Transcriptomic Analysis to Predict Candidate Genes Controlling Storage Root Flesh Color in Sweet Potato

  • Yi Liu,
  • Rui Pan,
  • Wenying Zhang,
  • Jian Lei and ,
  • Lianjun Wang,
  • Shasha Chai,
  • Xiaojie Jin,
  • Chunhai Jiao and
  • Xinsun Yang
  • + 4 authors+ 0 author

20 April 2022

Sweet potato is a hexaploid heterozygote with a complex genetic background, self-pollination infertility, and cross incompatibility, which makes genetic linkage analysis quite difficult. Genome-wide association studies (GWAS) provide a new strategy f...

(This article belongs to the Special Issue Application of Molecular Marker Technology in Crop Breeding)
  • Article
  • Open Access
16 Citations
2,997 Views
15 Pages

Physiological, Photosynthetic, and Transcriptomics Insights into the Influence of Shading on Leafy Sweet Potato

  • Xiaojing Jing,
  • Peiru Chen,
  • Xiaojie Jin,
  • Jian Lei and ,
  • Lianjun Wang,
  • Shasha Chai and
  • Xinsun Yang
  • + 2 authors+ 0 author

22 November 2023

Leafy sweet potato is a new type of sweet potato, whose leaves and stems are used as green vegetables. However, sweet potato tips can be affected by pre-harvest factors, especially the intensity of light. At present, intercropping, greenhouse plantin...

(This article belongs to the Special Issue Genetics of Abiotic Stress Tolerance in Plants)
  • Article
  • Open Access
8 Citations
2,385 Views
18 Pages

Combined Metabolome and Transcriptome Analyses Reveals Anthocyanin Biosynthesis Profiles Between Purple and White Potatoes

  • Miaomiao He,
  • Xinping Ma,
  • Yun Zhou,
  • Fang Wang and ,
  • Guonan Fang and
  • Jian Wang
  • + 1 author+ 0 author

29 November 2024

Colored potatoes with red and purple skin or flesh possess significant nutritional value and health benefits due to their rich anthocyanin content. To investigate the genetic mechanisms underlying color formation, the high-anthocyanin-content purple-...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
7 Citations
2,836 Views
13 Pages

Transcriptomics Identifies Differentially Expressed Genes Inducing Tuber Formation in Early- and Late-Maturing Potatoes

  • Yongzhen Ma,
  • Mengtao Li,
  • Shujuan Wang,
  • Ke Deng and ,
  • Long Zhao,
  • Jia Luo,
  • Wenquan Wang,
  • Fang Wang and
  • Jian Wang
  • + 4 authors+ 0 author

8 July 2024

The timing of potato tuberization is affected by potato ripeness, environmental factors, and polygene regulation. The accurate control of the transition to tuberization has both scientific and practical production value, but the key factors regulatin...

(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
  • Article
  • Open Access
11 Citations
5,373 Views
20 Pages

Influence of Organic Farming on the Potato Transcriptome

  • Daniela Pacifico,
  • Chiara Onofri,
  • Bruno Parisi,
  • Paola Ostano and
  • Giuseppe Mandolino

Organic agriculture sparks a lively debate on its potential health and environmental benefits. Comparative studies often investigate the response of crops to organic farming through targeted approaches and within a limited experimental work. To clari...

(This article belongs to the Section Sustainable Agriculture)
  • Article
  • Open Access
10 Citations
2,850 Views
23 Pages

Exploring the Molecular Landscape of Nitrogen Use Efficiency in Potato (Solanum tuberosum L.) under Low Nitrogen Stress: A Transcriptomic and Metabolomic Approach

  • Rui Xie,
  • Xiaolei Jin,
  • Jing Fang,
  • Shuli Wei and ,
  • Jie Ma,
  • Ying Liu,
  • Yuchen Cheng,
  • Liyu Chen,
  • Jiawei Liu and
  • Zhanyuan Lu
  • + 11 authors+ 6 authors

2 September 2024

Enhancing crop nitrogen use efficiency (NUE) in agricultural sciences is a pivotal challenge, particularly for high-demand crops like potatoes (Solanum tuberosum L.), the world’s third most significant food crop. This study delves into the mole...

(This article belongs to the Section Plant-Crop Biology and Biochemistry)
  • Article
  • Open Access
6 Citations
2,222 Views
16 Pages

17 September 2024

Anthocyanins, flavonoid pigments, are responsible for the purple and red hues in potato tubers. This study analyzed tubers from four potato cultivars—red RR, purple HJG, yellow QS9, and white JZS8—to elucidate the genetic mechanisms under...

(This article belongs to the Special Issue Advances in Multi-Omics for Functional Genomics Studies and Molecular Breeding)
  • Article
  • Open Access
9 Citations
3,314 Views
18 Pages

Integrated Metabolomic and Transcriptomic Analyses Reveal the Basis for Carotenoid Biosynthesis in Sweet Potato (Ipomoea batatas (L.) Lam.) Storage Roots

  • Qingming Ren,
  • Xiaoxi Zhen,
  • Huiyu Gao,
  • Yinpei Liang and ,
  • Hongying Li,
  • Juan Zhao,
  • Meiqiang Yin,
  • Yuanhuai Han and
  • Bin Zhang
  • + 4 authors+ 0 author

23 October 2022

Carotenoids are important compounds of quality and coloration within sweet potato storage roots, but the mechanisms that govern the accumulation of these carotenoids remain poorly understood. In this study, metabolomic and transcriptomic analyses of...

(This article belongs to the Special Issue Plant Metabolic Genetic Engineering)
  • Article
  • Open Access
627 Views
24 Pages

Ionomic and Transcriptomic Reprogramming Reveal Contrasting Iron Deficiency and Excess Responses in Potato (Solanum tuberosum L.)

  • Xiangying Ma,
  • Yongzhen Ma,
  • Shenglong Yang,
  • Wang Su and ,
  • Miaomiao He,
  • Guonian Pu,
  • Guangji Ye and
  • Jian Wang
  • + 3 authors+ 0 author

Iron (Fe) is an essential micronutrient for plant growth, serving as a cofactor in chlorophyll synthesis, photosynthetic electron transport, and redox reactions. Both Fe deficiency and excess disrupt mineral nutrient homeostasis, but the ionomic and...

(This article belongs to the Collection The Correlation of Stress Response and Organ Development in Horticultural Crops)
  • Article
  • Open Access
7 Citations
2,896 Views
26 Pages

Comparative Transcriptome Analysis of Defense Response of Potato to Phthorimaea operculella Infestation

  • Chunyue Zhu,
  • Xiaocui Yi,
  • Miao Yang,
  • Yiyi Liu and ,
  • Yao Yao,
  • Shengjiang Zi,
  • Bin Chen and
  • Guanli Xiao
  • + 3 authors+ 0 author

29 August 2023

The potato tuber moth (PTM), Phthorimaea operculella Zeller (Lepidoptera: Gelechiidae), is one of the most destructive pests of potato crops worldwide. Although it has been reported how potatoes integrate the early responses to various PTM herbivory...

(This article belongs to the Special Issue Plant–Insect Interactions—2nd edition)
  • Article
  • Open Access
2,756 Views
20 Pages

Physiological and Transcriptomic Analyses of IAA-Induced Inhibition of Chlorophyll Formation in Potato Tubers Post-Harvest

  • Hongze Lv,
  • Fan Yang,
  • Bidan Shi,
  • Chuchu Zhang and ,
  • Hui Ma,
  • Jing Wang,
  • Ke Shi,
  • Guoqin Li,
  • Yi Wu and
  • Erihemu
  • + 6 authors+ 1 author

25 November 2025

Light exposure can induce post-harvest potato tubers to become green due to the accumulation of chlorophyll (Chl) and the formation of glycoside alkaloids, posing a potential risk to food safety. This study evaluated exogenous indole-3-acetic acid (I...

(This article belongs to the Section Food Packaging and Preservation)
  • Article
  • Open Access
2,794 Views
20 Pages

CRISPR/Cas9-Mediated pds Knockout in Potato Reveals Network-Level Transcriptomic Reorganization Beyond Pigment Loss

  • Xianjun Lai,
  • Yuxin Xiang,
  • Siqi Liu,
  • Yandan Zhang and ,
  • Yizheng Zhang,
  • Zihan Chen,
  • Shifeng Liu and
  • Lang Yan
  • + 3 authors+ 0 author

28 December 2025

Background: The phytoene desaturase gene is a classical visual marker for validating CRISPR/Cas9 genome editing in plants, as its loss of function produces a readily scorable albino phenotype. While the biochemical basis of pigment loss is well estab...

(This article belongs to the Section Plant Molecular Biology)
  • Article
  • Open Access
4 Citations
1,697 Views
26 Pages

Physiological, Biochemical, and Transcriptomic Responses to Iron Deficiency in Two Potato Varieties

  • Xiangying Ma,
  • Yanping Zhang,
  • Shenglong Yang,
  • Miaomiao He and ,
  • Yun Zhou,
  • Guangji Ye and
  • Jian Wang
  • + 2 authors+ 0 author

21 September 2025

This study aimed to elucidate the physiological, biochemical, and transcriptional regulatory responses of potato plants to iron deficiency stress. Two potato varieties were selected for analysis: 05P (high tuber iron content) and CI5 (low tuber iron...

(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
  • Article
  • Open Access
437 Views
24 Pages

Integrated Transcriptomic and Metabolomic Analysis of Starch Biosynthesis in Different Spatial Regions of Tetraploid Potato Tubers

  • Huanhuan Lian,
  • Chao Zhang,
  • Guangji Ye,
  • Wang Su and ,
  • Shenglong Yang,
  • Yun Zhou,
  • Yongzhen Ma and
  • Jian Wang
  • + 3 authors+ 0 author

18 September 2026

Potato tubers exhibit prominent spatial heterogeneity in starch accumulation across distinct anatomical zones, yet the underlying transcriptional and metabolic regulatory mechanisms remain unclear, especially the molecular basis for divergent starch...

(This article belongs to the Special Issue Advances in Plant Multi-Omics)
  • Article
  • Open Access
18 Citations
4,422 Views
29 Pages

3 March 2022

Potatoes are the world’s most produced non-grain crops and an important food source for billions of people. Potatoes are susceptible to numerous pathogens that reduce yield, including Potato virus Y (PVY). Genetic resistance to PVY is a sustain...

(This article belongs to the Section Viruses of Plants, Fungi and Protozoa)
  • Article
  • Open Access
9 Citations
2,599 Views
14 Pages

Transcriptome Analysis of Potato Leaves under Oxidative Stress

  • Juping Liu,
  • Xun Tang,
  • Huanhuan Zhang,
  • Meng Wei and ,
  • Ning Zhang and
  • Huaijun Si
  • + 1 author+ 0 author

Potato (Solanum tuberosum L.) is a major global food crop, and oxidative stress can significantly impact its growth. Previous studies have shown that its resistance to oxidative stress is mainly related to transcription factors, post-translational mo...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
20 Citations
4,658 Views
18 Pages

Transcriptome Analysis of Potato Infected with the Necrotrophic Pathogen Alternaria solani

  • Sophie M. Brouwer,
  • Maja Brus-Szkalej,
  • Ganapathi V. Saripella,
  • Dong Liang and ,
  • Erland Liljeroth and
  • Laura J. Grenville-Briggs
  • + 1 author+ 0 author

18 October 2021

Potato early blight is caused by the necrotrophic fungus Alternaria solani and can result in yield losses of up to 50% if left uncontrolled. At present, the disease is controlled by chemical fungicides, yet rapid development of fungicide resistance r...

(This article belongs to the Section Plant Protection and Biotic Interactions)
  • Article
  • Open Access
17 Citations
4,204 Views
15 Pages

2 September 2021

Sweet potato (Ipomoea batatas (L.) Lam.) is a commercially relevant food crop with high demand worldwide. This species belongs to the Convolvulaceae family and is native to tropical and subtropical regions. Storage temperature and time can adversely...

(This article belongs to the Special Issue Postharvest Management of Fruits and Vegetables)
  • Article
  • Open Access
8 Citations
2,407 Views
22 Pages

Transcriptomics Analysis Reveals a More Refined Regulation Mechanism of Methylation in a Drought-Tolerant Variety of Potato

  • Zhenzhen Bi,
  • Yihao Wang,
  • Pengcheng Li,
  • Chengju Li and ,
  • Yindu Liu,
  • Chao Sun,
  • Panfeng Yao,
  • Yuhui Liu,
  • Zhen Liu and
  • Jiangping Bai
  • + 5 authors+ 0 author

30 November 2022

Whether DNA methylation modification affects the gene transcription and expression of potatoes under drought stress is still unknown. In this study, we used comparative transcriptomics to explore the expression pattern of related genes of the drought...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
2 Citations
1,441 Views
19 Pages

Identification, Transcriptome, and Proteome Analysis of Expansin-like Subfamilies in the Storage Root Across I. trifida (2x), Wild (4x, 6x) and Cultivated Sweet Potatoes

  • Jingjing Li,
  • Zhiyu Zhang,
  • Qiuzhuo Li,
  • Chunli Geng and ,
  • Haoxi Huang,
  • Xiaojian Qin,
  • Yongshu Liang,
  • Wenbin Nan,
  • Hanma Zhang and
  • Ming Li
  • + 6 authors+ 1 author

20 January 2026

The expansin-like subfamilies (EXLA and EXLB) are vital for plant cell wall dynamics, but it remains uncharacterized in wild tetraploid and hexaploid Ipomoea batatas, and its role in the storage root (SR) development is poorly understood. In this wor...

(This article belongs to the Special Issue Transcriptome Analysis and Gene Regulation in Plant Growth Development, 3rd Edition)
  • Article
  • Open Access
6 Citations
1,087 Views
23 Pages

22 December 2025

This study investigated the mechanism by which combined vacuum packaging and 0.5% (w/v) ascorbic acid treatment (VP-AsA) preserves fresh-cut potatoes at 4 °C, integrating physiological and transcriptomic analyses. Transcriptome sequencing reveale...

(This article belongs to the Special Issue Technologies and Strategies to Improve the Quality and Extend the Shelf-Life of Post-Harvest Fruits and Vegetables)
  • Article
  • Open Access
1,362 Views
30 Pages

Potato tubers can be dormant for 1–15 weeks after harvest, and the germination of tuber eye-buds is suppressed by cold. Genetic mechanisms regulating bud dormancy at low temperatures are not completely understood. We performed RNA-seq to compar...

(This article belongs to the Section Propagation and Seeds)
  • Article
  • Open Access
6 Citations
2,115 Views
13 Pages

Transcriptome Analysis Reveals Co-Expression Regulation of Sugar Transport and Signaling Networks in Initiating Stolon-to-Tuber Transition in Potato

  • Jun Hu,
  • Jinxue Hu,
  • Shaoguang Duan,
  • Congchao Xiang and ,
  • Yanfeng Duan,
  • Shuqing Zhang and
  • Guangcun Li
  • + 2 authors+ 0 author

The network regulatory mechanism governing the dynamics of plant maturity and tuber development in potatoes (Solanum tuberosum L.) has remained a major focus in potato molecular biology research. In this study, three potato cultivars with different m...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
5 Citations
4,434 Views
19 Pages

Transcriptome Profiling of the Potato Exposed to French Marigold Essential Oil with a Special Emphasis on Leaf Starch Metabolism and Defense against Colorado Potato Beetle

  • Sofija Stupar,
  • Milan Dragićević,
  • Vele Tešević,
  • Jovana Stanković-Jeremić and ,
  • Vuk Maksimović,
  • Tatjana Ćosić,
  • Nina Devrnja,
  • Ljiljana Tubić,
  • Aleksandar Cingel and
  • Jelena Savić
  • + 7 authors+ 2 authors

18 January 2021

Flower strips of French Marigold are commonly used pest repellents in potato fields. However, the effect of French Marigold volatiles on potato metabolism, physiology and induced defense is unknown. Thus, a microarray transcriptome analysis was perfo...

  • Article
  • Open Access
385 Views
22 Pages

Time-Resolved Developmental and Transcriptomic Profiling of Potato Stolon Initiation from Basal Axillary Buds Following Soil Covering

  • Kaiyuan Zhao,
  • Baozhen Jiao,
  • Yuan Sun,
  • Tingting Wang and ,
  • Yongchao Wu and
  • Binquan Huang
  • + 1 author+ 0 author

26 August 2026

Potato stolon research has emphasized stolon-tip tuberization, leaving the transition of basal axillary buds into subterranean stolons poorly characterized. Using cv. Désirée, we characterized this transition at IS0 immediately before s...

(This article belongs to the Section Molecular Plant Sciences)

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