Biology

23 pages, 1882 KiB

Open AccessReview

Epigenetic Drivers of Chemoresistance in Nucleobase and Nucleoside Analog Therapies

by John Kaszycki and Minji Kim

Biology 2025, 14(7), 838; https://doi.org/10.3390/biology14070838 (registering DOI) - 9 Jul 2025

Nucleobase and nucleoside analogs are critical components of antimetabolite chemotherapy treatments used to disrupt DNA replication and induce apoptosis in rapidly proliferating cancer cells. However, the development of resistance to these agents remains a major clinical challenge. This review explores the epigenetic mechanisms [...] Read more.

Nucleobase and nucleoside analogs are critical components of antimetabolite chemotherapy treatments used to disrupt DNA replication and induce apoptosis in rapidly proliferating cancer cells. However, the development of resistance to these agents remains a major clinical challenge. This review explores the epigenetic mechanisms that contribute to acquired chemoresistance, focusing on DNA methylation, histone modifications, and non-coding RNAs (ncRNAs). These epigenetic alterations regulate key processes such as DNA repair, drug metabolism, cell transport, and autophagy, enabling cancer cells to survive and resist therapeutic pressure. We highlight how dysregulation of DNA methyltransferases (DNMTs) and histone acetyltransferases (HATs) modulates expression of transporters (e.g., hENT1, ABCB1), DNA repair enzymes (e.g., Polβ, BRCA1/2), and autophagy-related genes (e.g., CSNK2A1, BNIP3). Furthermore, emerging roles for long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) in regulating nucleoside export and DNA damage response pathways underscore their relevance as therapeutic targets. The interplay of these epigenetic modifications drives resistance to agents such as gemcitabine and 5-fluorouracil across multiple tumor types. We also discuss recent progress in therapeutic interventions, including DNMT and HDAC inhibitors, RNA-based therapeutics, and CRISPR-based epigenome editing. Full article

(This article belongs to the Section Immunology)

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2 pages, 182 KiB

Open AccessCorrection

Correction: Qi et al. Recent Progress in Rice–Xanthomonas oryzae Interactions. Biology 2025, 14, 471

by Yuting Qi, Qiong Rao, Chenglong Lu, Junyi Gong and Yuxuan Hou

Biology 2025, 14(7), 837; https://doi.org/10.3390/biology14070837 (registering DOI) - 9 Jul 2025

Abstract

Errors in Table 1 [...] Full article

(This article belongs to the Special Issue Regulatory Mechanisms of Plant Stress Response)

29 pages, 8095 KiB

Open AccessArticle

Revealing the Improving Effect and Molecular Mechanism of L-Clausenamide in Combating the Acute Lung Injury: Insights from Network Pharmacology, Molecular Docking, and In Vitro Validation

by Yu Fu, Nannan Wang, Jinhai Luo, Yanyi Huang, Baoning Liu, Charles S. Brennan, Baojun Xu and Jincan Luo

Biology 2025, 14(7), 836; https://doi.org/10.3390/biology14070836 (registering DOI) - 9 Jul 2025

Abstract

Acute lung injury is a severe disease with a high mortality rate, which can result in increased oxidative stress and further mitochondrial damage and cell apoptosis. L-Clausenamide is an amide from the fruit wampee. This study combined network pharmacology, molecular docking, and [...] Read more.

Acute lung injury is a severe disease with a high mortality rate, which can result in increased oxidative stress and further mitochondrial damage and cell apoptosis. L-Clausenamide is an amide from the fruit wampee. This study combined network pharmacology, molecular docking, and in vitro study to elucidate the effect of combating acute lung injury and the underlying mechanism of L-Clausenamide. Network pharmacology indicated that the 152 targets can treat acute lung injury through regulating oxidative stress. Based on PPI analysis and screening of the central target, AKT1 is the key target of the underlying mechanism. KEGG and GO enrichment analysis demonstrated that apoptosis is an important pathway for this curing effect. In the in vitro study, treatment with L-Clausenamide alleviates intracellular ROS accumulation, mitochondrial membrane potential loss, mitochondrial morphological distortion, ATP decrease, and the CASP3 activity. The SPR analysis was performed to validate the binding between AKT1 and L-Clausenamide. The Western blot result showed that L-Clausenamide increases the phosphorylation of Akt and decreases cleavage of CASP3. L-Clausenamide can alleviate lipopolysaccharide (LPS)-induced acute lung injury through targeting AKT1 and show an improvement in mitochondrial abnormality and inhibition against ROS-activated caspase-3-dependent apoptosis activation. Full article

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14 pages, 1182 KiB

Open AccessArticle

Endocranial Morphology in Metopism

by Silviya Nikolova, Diana Toneva and Gennady Agre

Biology 2025, 14(7), 835; https://doi.org/10.3390/biology14070835 (registering DOI) - 9 Jul 2025

Abstract

Comparative investigations on homogenous cranial series have demonstrated that metopism is linked to a specific configuration of the cranial vault; however, there are no comparative data concerning the endocranial morphology in this condition. This study aimed to compare the endocranial space in metopic [...] Read more.

Comparative investigations on homogenous cranial series have demonstrated that metopism is linked to a specific configuration of the cranial vault; however, there are no comparative data concerning the endocranial morphology in this condition. This study aimed to compare the endocranial space in metopic and control crania using morphometric analysis and machine learning algorithms. For this purpose, a series of 230 (184 control and 46 metopic) dry crania of contemporary adult Bulgarian males were scanned using an industrial µCT system. The 3D coordinates of 47 landmarks were collected on the endocranial surface. All possible measurements between the landmarks were calculated as Euclidean distances. The resultant 1081 measurements represented the initial dataset, which was reduced to smaller datasets applying different criteria. The derived datasets were used for learning a set of classification models by machine learning algorithms. The morphometric analysis showed that in the metopic crania some segments of the anterior and middle cranial fossae were significantly longer, and the landmark endobregma was significantly closer to the anterior and middle sections of the cranial base. The most accurate model, with a classification accuracy of 85%, was the Naive Bayes one learned on a dataset of 69 attributes assembled after an attribute selection procedure. Full article

(This article belongs to the Section Medical Biology)

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15 pages, 1792 KiB

Open AccessArticle

The Enhancement of Immunity Gained from Feline Trivalent Vaccines in Mice Using Feline IL-15, IL-23 and Metabolic Regulatory Molecules

by Ruichen Gao, Wei Sun, Danning Zhang, Linhan Zhang, Dafang He, Mengxi Li, Yi Wei, Junjie Peng and Gang Wang

Biology 2025, 14(7), 834; https://doi.org/10.3390/biology14070834 (registering DOI) - 9 Jul 2025

Abstract

The feline calicivirus, herpesvirus, and panleukopenia viruses are major infections that cause serious diseases in cats; however, current trivalent vaccines have limitations in immune efficacy and their duration of protection. This study assesses the immune-enhancing effects of novel adjuvants (feline IL-15, IL-23, and [...] Read more.

The feline calicivirus, herpesvirus, and panleukopenia viruses are major infections that cause serious diseases in cats; however, current trivalent vaccines have limitations in immune efficacy and their duration of protection. This study assesses the immune-enhancing effects of novel adjuvants (feline IL-15, IL-23, and metabolic modulators) on vaccine responses. Forty mice were randomly assigned to four groups: Group A (composite adjuvants), Group B (metabolic regulatory molecules and Mn adjuvant), Group C1 (Mn adjuvant), and Group C2 (a blank commercial vaccine). The results showed that Group A had significantly higher neutralizing antibody titers against calicivirus post-booster immunization, while both Groups A and B exhibited enhanced antibody responses against the herpesvirus and panleukopenia viruses. Notably, Group A displayed increased proportions of memory T cells, follicular B cells, and activated B cells. These findings suggest that the combination of feline IL-15, IL-23, and metabolic modulators are safe and effective immunoadjuvants for trivalent feline vaccines to promote immune cell differentiation and antibody production, thus representing a promising strategy to optimize vaccine efficacy. Full article

(This article belongs to the Special Issue Immune Response Regulation in Animals)

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13 pages, 3979 KiB

Open AccessArticle

Comparative Histopathological and Morphometric Analysis of Lung Tissues in Stillborn Cubs of South China Tiger and Amur Tiger

by Le Zhang, Jincheng Yang, Fengping He, Yaohua Yuan, Zhaoyang Liu, Guangyao Geng, Kaixiong Lin, Qunxiu Liu, Dan Liu, Tianlong Liu and Yanchun Xu

Biology 2025, 14(7), 833; https://doi.org/10.3390/biology14070833 - 8 Jul 2025

Abstract

This study aimed to determine whether the fetuses experienced hypoxic distress or intra-partum death due to compromised oxygen supply by quantitatively analyzing the lung structures of deceased captive South China Tiger (Panthera tigris amoyensis, SCT) cubs. Furthermore, it investigated the etiology [...] Read more.

This study aimed to determine whether the fetuses experienced hypoxic distress or intra-partum death due to compromised oxygen supply by quantitatively analyzing the lung structures of deceased captive South China Tiger (Panthera tigris amoyensis, SCT) cubs. Furthermore, it investigated the etiology and mechanisms of asphyxia in the deceased cubs and explored potential factors contributing to the high mortality rate of SCT cubs. The research focused on three deceased SCT cubs, using three deceased neonatal Amur Tigers (P. t. altaica, AT) with no inbreeding background as controls. Histological analysis of the cubs’ lungs was conducted using hematoxylin–eosin (H&E) and special staining techniques. The possible causes of death in SCT cubs were evaluated by comparing pulmonary pathological changes and morphological parameters, including alveolar space (P(ASP)) values, mean alveolar linear intercept (L_m), and mean thickness of alveolar septa (Tas). Our research reveals that hypoxia is one of the most significant factors contributing to the mortality of tiger cubs. Additionally, we hypothesize that inbreeding depression may lead to abnormal lung development (e.g., thickening of lung tissue) in SCT cubs. This study lays the foundation for comprehensive investigations into the mortality of highly inbred SCT cubs. Full article

(This article belongs to the Section Zoology)

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21 pages, 612 KiB

Open AccessArticle

Increased Temporal Variability of Gait in ASD: A Motion Capture and Machine Learning Analysis

by Katharine Goldthorp, Benn Henderson, Pratheepan Yogarajah, Bryan Gardiner, Thomas Martin McGinnity, Brad Nicholas and Dawn C. Wimpory

Biology 2025, 14(7), 832; https://doi.org/10.3390/biology14070832 - 8 Jul 2025

Abstract

Motor deficits, including atypical gait, are common in individuals with autism spectrum disorder (ASD), although the precise nature and cause of this co-occurrence is unclear. Because walking is a natural activity and gait timing is a metric that is relatively accessible to measurement, [...] Read more.

Motor deficits, including atypical gait, are common in individuals with autism spectrum disorder (ASD), although the precise nature and cause of this co-occurrence is unclear. Because walking is a natural activity and gait timing is a metric that is relatively accessible to measurement, we explored whether autistic gait could be described solely in terms of the timing of gait parameters. The aim was to establish whether temporal analysis, including machine learning models, could be used as a group classifier between ASD and typically developing (TD) individuals. Thus, we performed a high-resolution temporal analysis of gait on two age-matched groups of male participants: one group with high-functioning ASD and a comparison TD group (each N = 16, age range 7 to 35 years). The primary data were collected using a VICON^® 3D motion analysis system. Significant increased temporal variability of all gait parameters tested was observed for the ASD group compared to the TD group (p < 0.001). Further machine learning analysis showed that the temporal variability of gait could be used as a group classifier for ASD. Of the twelve models tested, the best-fitting model type was random forest. The temporal analysis of gait with machine learning algorithms may be useful as a future ASD diagnostic aid. Full article

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45 pages, 25464 KiB

Open AccessArticle

Exploring the Efficacy and Potential Mechanisms of Topical Periplaneta americana (L.) Extract in Treating Androgenetic Alopecia in a Mouse Model: A Systems Pharmacology and Skin Microbiome Analysis

by Tangfei Guan, Xin Yang, Canhui Hong, Peiyun Xiao, Yongshou Yang, Chenggui Zhang and Zhengchun He

Biology 2025, 14(7), 831; https://doi.org/10.3390/biology14070831 (registering DOI) - 8 Jul 2025

Abstract

Androgenetic alopecia (AGA), the most prevalent form of hair loss worldwide, faces significant therapeutic challenges due to high costs and limited efficacy of current interventions, necessitating safer and more effective solutions. Periplaneta americana (L.)-derived PA-011, endowed with anti-inflammatory and antioxidant properties, has demonstrated [...] Read more.

Androgenetic alopecia (AGA), the most prevalent form of hair loss worldwide, faces significant therapeutic challenges due to high costs and limited efficacy of current interventions, necessitating safer and more effective solutions. Periplaneta americana (L.)-derived PA-011, endowed with anti-inflammatory and antioxidant properties, has demonstrated notable hair growth-promoting effects in AGA mouse models. This study employed LC-MS/MS, peptidomics, and network pharmacology to characterize PA-011’s chemical composition and predict its potential targets in AGA pathogenesis. Using Western blot and RT-qPCR, PA-011 intervention significantly inhibited inflammatory responses and oxidative stress levels in mouse skin tissues. Concurrently, PA-011 activated the proliferative potential of hair follicle stem cells, as demonstrated by upregulated expression of the cell proliferation marker Ki67, and activated the Wnt/β-catenin signaling pathway in DHT-induced AGA mice. Transcriptomic and metabolomic analyses revealed multi-target effects of PA-011, including modulation of PI3K-Akt/MAPK pathways, pentose phosphate metabolism, and amino acid biosynthesis. 16S rRNA sequencing and metagenomic analysis showed that AGA disrupts skin microbial homeostasis, while PA-011 intervention normalized the microbiota composition. Topical application of PA-011 promoted robust hair regrowth without detectable toxicity in safety assessments. This preclinical study establishes PA-011 as a promising candidate for AGA therapy, warranting further translational investigation. Full article

(This article belongs to the Section Medical Biology)

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31 pages, 9276 KiB

Open AccessArticle

Annotation of the Extracellular Enveloped Form of Monkeypox Virus for the Design, Screening, Validation, and Simulation of a Chimeric Vaccine Construct

by Mohammad Asrar Izhari, Essa Ajmi Alodeani, Siraj B. Alharthi, Ahmad H. A. Almontasheri, Foton E. Alotaibi, Rakan E. Alotaibi, Wael A. Alghamdi, Osama Abdulaziz, Fahad Alghamdi, Ali Alisaac, Mansoor Alsahag and Ahmed R. A. Gosady

Biology 2025, 14(7), 830; https://doi.org/10.3390/biology14070830 - 8 Jul 2025

Abstract

Recent outbreaks caused by hMPXV, especially hMPXV lineages/sub-lineages, represent public health threats necessitating stringent prophylactic measures to ameliorate their colossal impact. The current study annotated the EEV form of hMPXV’s target proteins to formulate a reverse vaccinology-dependent hMPXV multiepitope vaccine. Epitope determination, followed [...] Read more.

Recent outbreaks caused by hMPXV, especially hMPXV lineages/sub-lineages, represent public health threats necessitating stringent prophylactic measures to ameliorate their colossal impact. The current study annotated the EEV form of hMPXV’s target proteins to formulate a reverse vaccinology-dependent hMPXV multiepitope vaccine. Epitope determination, followed by vaccine formulation, was undertaken. The promising formulation was validated for its potential to trigger immune responses immunoinformatically. The MPXV-1-Beta formulation was characterised as a promising candidate based on antigenicity score, physicochemical properties, solubility score, ProSA Z-score, and Ramachandran plot. Docking, normal mode analysis, and molecular dynamic simulation of MPXV-1-Beta with TLRs and MHCs authenticated rigid docking and its efficacy in enhancing immune receptor activation under physiological conditions. MPXV-1-Beta was discerned to trigger a sustained immune response (IR) with a broader average population coverage of 97.526, SD = 12.44. The proposed MPXV-1-Beta candidate showed significant potential. The findings of this study provide a preliminary framework for developing an efficacious hMPXV vaccine; however, extensive in vitro, in vivo, and clinical evaluations are required to substantiate the computational insights. Full article

(This article belongs to the Special Issue Artificial Intelligence Research for Complex Biological Systems)

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17 pages, 3094 KiB

Open AccessArticle

Urolithin A Protects Ovarian Reserve Via Inhibiting PI3K/Akt Signaling and Preventing Chemotherapy-Induced Follicle Apoptosis

by Weiyong Wang, Ren Zhou, Yong Ruan and Shuhao Fan

Biology 2025, 14(7), 829; https://doi.org/10.3390/biology14070829 - 8 Jul 2025

Abstract

Urolithin A, which is a natural gut microbial metabolite, exerts multiple beneficial effects upon supplementation, including prolonging lifespan, mitigating diseases, restoring the quality of aged oocytes and alleviating drug toxicity. The study aims to investigate the ovarian protective role of Urolithin A using [...] Read more.

Urolithin A, which is a natural gut microbial metabolite, exerts multiple beneficial effects upon supplementation, including prolonging lifespan, mitigating diseases, restoring the quality of aged oocytes and alleviating drug toxicity. The study aims to investigate the ovarian protective role of Urolithin A using a neonatal mouse ovarian in vitro culture and chemotherapy model, with a particular focus on its mechanisms for inhibiting primordial follicle activation and mitigating cyclophosphamide (CY) or 4-hydroperoxy (4-HC)-induced follicle apoptosis. The results showed that Urolithin A significantly decreased the number of growing follicles and downregulated the expression of oocyte growth-related genes (Gdf9 and Zp3) and protein (DDX4), as well as Ki-67 and BrdU-positive signals. Further studies revealed that Urolithin A significantly downregulated the levels of phosphorylated Akt and FOXO3a and decreased the percentage of oocytes with FOXO3a nuclear export. Molecular docking showed a strong binding ability between Urolithin A and its downregulated gene Pik3cg. Moreover, Urolithin A significantly decreased CY- and 4-HC-induced increases in cleaved Caspase-3- and PARP1-positive signals. Meanwhile, RNA-seq analysis indicated that Urolithin A significantly downregulated CY-induced expression of DNA damage-related genes (Trp73 and Trim29). In short, Urolithin A inhibits primordial follicle activation by reducing PI3K/Akt signaling reactivity. Furthermore, Urolithin A prevents CY-induced follicle apoptosis. The study provides valuable insights into Urolithin A treatment for chemotherapy-induced infertility. Full article

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20 pages, 5104 KiB

Open AccessArticle

Effects of the Invasive Common Myna (Acridotheres tristis) on Nest Site Competition and Predation in Native Birds: A Before-After-Control-Impact Study

by Iris Fortoune Engel, Ido Izhaki and Motti Charter

Biology 2025, 14(7), 828; https://doi.org/10.3390/biology14070828 - 8 Jul 2025

Abstract

Despite concerns about invasive Common Mynas (Acridotheres tristis), few studies have experimentally demonstrated their impact on native birds. Using a Before-After-Control-Impact (BACI) design with 142 nest boxes, we assessed how Myna presence affected House Sparrows (Passer domesticus) and Great [...] Read more.

Despite concerns about invasive Common Mynas (Acridotheres tristis), few studies have experimentally demonstrated their impact on native birds. Using a Before-After-Control-Impact (BACI) design with 142 nest boxes, we assessed how Myna presence affected House Sparrows (Passer domesticus) and Great Tits (Parus major) before (2009–2010) and after (2020–2021) their arrival in 2015. Half the boxes had large entrances accessible to all three species; half had small entrances accessible only to Great Tits. In a 2022 field experiment, we manipulated nest box entrances and used cameras to study Myna predation and nest usurpation. Following the establishment of Myna, House Sparrow breeding declined by 68.1%. Great Tits increased use of small entrance boxes by 59.9% and decreased use of large entrance boxes by 45.4%. Although overall Great Tit breeding increased, fledging success declined in large entrance boxes, but not small entrance ones. In the 2022 experiment, 46% (n = 26) of Great Tit nests were predated; Common Mynas were responsible for 50% of these cases and subsequently bred in the usurped nests. This study experimentally demonstrates that House Sparrow breeding numbers decrease and that Great Tits change their nesting behavior after the appearance of the Common Myna. Additionally, this research found that Common Mynas impact native species by predating and usurping nests. Installing small-entrance boxes can help manage Great Tit populations. Further research should explore nest box designs for House Sparrows and their impacts on other cavity-nesting and non-cavity-nesting bird species. Full article

(This article belongs to the Section Conservation Biology and Biodiversity)

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18 pages, 3350 KiB

Open AccessArticle

Distribution of Summer Zooplankton in the Waters off the Kuril Islands (Northwest Pacific) in Relationship with Environmental Conditions

by Valentina Kasyan

Biology 2025, 14(7), 827; https://doi.org/10.3390/biology14070827 - 8 Jul 2025

Abstract

This study covers a large area around the Kuril Islands, one of the longest island arcs in the world, crossing several climatic zones, which allows for observations of longitudinal shifts in planktonic species’ ranges following shifts in the boundaries between the climatic zones. [...] Read more.

This study covers a large area around the Kuril Islands, one of the longest island arcs in the world, crossing several climatic zones, which allows for observations of longitudinal shifts in planktonic species’ ranges following shifts in the boundaries between the climatic zones. We analyzed spatial and vertical changes in the zooplankton community structure and the associated environmental factors from Yuri Island to Onekotan Island both in Pacific and Sea of Okhotsk waters, which are influenced by cold and warm water masses. Species diversity in the Pacific waters was higher than in the Sea of Okhotsk waters, with a peak of diversity recorded from warm waters off the southern Kuril Islands associated with the Soya Current and the Kuroshio Extension. Zooplankton abundance and biomass above the thermocline were higher in the Pacific waters compared to the Sea of Okhotsk area, showing a tendency to increase with higher latitude and lower water temperatures and generally to decline with depth. The water temperature and salinity below the thermocline were the most important explanatory environmental variables responsible for zooplankton abundance variations. The distribution patterns of the large-sized copepods were strongly correlated with temperature and salinity, as well as with dissolved oxygen and chlorophyll a levels. In contrast, small-sized copepods were adapted to or thrived in the areas with elevated temperature and salinity values and a reduced chlorophyll a concentration. Full article

(This article belongs to the Special Issue Living Resources of the Deep Sea: Biological Profiles and Environmental Linkages)

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31 pages, 14137 KiB

Open AccessArticle

Unraveling the Role of Spicules in Shaping Sponge Body Structure: Evidence from the Early Cambrian Shuijingtuo Formation

by Xinyi Ren, Yazhou Hu, Luke C. Strotz, Mei Luo, Caibin Zhang and Zhifei Zhang

Biology 2025, 14(7), 826; https://doi.org/10.3390/biology14070826 - 7 Jul 2025

Abstract

In most cases, sponge fossils are preserved as isolated spicules, with complete sponge body fossils largely confined to Konservat-Lagerstätten. Although the classification and diversity of sponges and their isolated spicules have been extensively studied, no systematic attempts have been made to define the [...] Read more.

In most cases, sponge fossils are preserved as isolated spicules, with complete sponge body fossils largely confined to Konservat-Lagerstätten. Although the classification and diversity of sponges and their isolated spicules have been extensively studied, no systematic attempts have been made to define the relationship between fossil spicules and the sponge body plan. By utilizing relatively well-preserved sponge fossils from the black shales of the Shuijingtuo Formation (South China) in conjunction with isolated spicules from the same locality, we assess spicule morphology to identify the potential functional roles of spicules and chart their arrangement within the sponge body. The elemental distribution and three-dimensional morphology of the examined sponge body fossil (likely a hexactinelid) are assessed using both micro-XRF and micro-CT. Tetractine, stauractine and pentactine spicules are the most abundant spicule types, both in the body fossil and in acid residues, with an additional spicule type (monaxons) also present. The larger pentactine spicules (five-ray spicules) frame the structure, whereas the smaller tetractines and stauractines (four-ray spicules), along with smaller pentactines, are arranged along the branches of the larger spicules. Based on the arrangement of the different spicules, it is proposed that each of the spicule types represents a discrete functional form: monaxons support the overall sponge body plan, pentactines construct the framework of the parietal gaps, and the smaller pentactines or tetractines stabilize the framework of the parietal gaps. These results provide a new understanding of sponge morphology, spicule function and the relationship between isolated fossil spicules and associated sponge body fossils. Full article

(This article belongs to the Section Evolutionary Biology)

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21 pages, 1654 KiB

Open AccessArticle

Circulating Antimicrobial Peptides as Biomarkers of Inflammation and Airway Dysfunction After Marathon Running

by Marie-Therese Lingitz, Hannes Kühtreiber, Lisa Auer, Michael Mildner, Claus G. Krenn, Clemens Aigner, Bernhard Moser, Christine Bekos and Hendrik Jan Ankersmit

Biology 2025, 14(7), 825; https://doi.org/10.3390/biology14070825 - 7 Jul 2025

Abstract

Marathon running exerts physical stress and may lead to transient immune dysregulation, increasing susceptibility to airway inflammation and exercise-induced bronchoconstriction (EIB). This study investigated systemic levels of antimicrobial peptides in athletes and their association with EIB. Serum concentrations of angiogenin, human beta-defensin 2 [...] Read more.

Marathon running exerts physical stress and may lead to transient immune dysregulation, increasing susceptibility to airway inflammation and exercise-induced bronchoconstriction (EIB). This study investigated systemic levels of antimicrobial peptides in athletes and their association with EIB. Serum concentrations of angiogenin, human beta-defensin 2 (hBD-2), major basic protein (MBP), S100A8, and S100A8/A9 were measured in 34 marathoners and 36 half-marathoners at baseline, immediately after a race, and seven days postrace using enzyme-linked immunosorbent assays and compared with 30 sedentary controls. Lung function was assessed by spirometry to identify bronchoconstriction. Levels of hBD-2 and S100A8/A9 were significantly elevated postrace in runners compared to baseline and controls, returning to baseline during recovery. During recovery, S100A8 levels remained slightly elevated in marathoners with EIB. Similarly, human beta-defensin 2 was modestly increased in runners who developed bronchoconstriction. Notably, S100A8 levels correlated negatively with lung function parameters, including forced expiratory volume and mid-expiratory flows. These findings suggest that endurance running induces systemic inflammatory responses and modulates innate immune peptides, particularly in individuals prone to bronchoconstriction. These peptides may serve as biomarkers of respiratory stress and help guide personalized strategies in endurance sports. Full article

(This article belongs to the Section Biochemistry and Molecular Biology)

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16 pages, 1041 KiB

Open AccessArticle

Isolation and Characterization of Cultivable Microbes from the Gut of Zophobas atratus (Coleoptera: Tenebrionidae) Larvae Reared on Two Types of Artificial Diets

by Vladislava Baklanova, Alexander Kuprin, Ivan Baklanov and Vadim Kumeiko

Biology 2025, 14(7), 824; https://doi.org/10.3390/biology14070824 - 7 Jul 2025

Abstract

Gut microbes are important for saproxylophagous insects, but little is known about the specific types of microbes that we can grow in the lab and how their diet affects them. We characterized aerobic culturable microbes from the superworm Zophobas atratus larvae reared on [...] Read more.

Gut microbes are important for saproxylophagous insects, but little is known about the specific types of microbes that we can grow in the lab and how their diet affects them. We characterized aerobic culturable microbes from the superworm Zophobas atratus larvae reared on a standard diet (SD) and a fungal-based diet (FD) using the selective plating and 16S rRNA sequencing of isolates. Five functional groups were cultured: amino acid autotrophs, enterobacteria, yeasts, cellulolytic bacteria, and molds. A quantitative assessment revealed distinct diet-dependent patterns: SD-fed larvae showed the dominance of enterobacteria and amino acid autotrophs, while FD-fed larvae exhibited a higher abundance of enterobacteria and yeasts. Mold populations remained minimal under both diets. A phylogenetic analysis of bacterial isolates showed four core bacterial phyla (Pseudomonadota, Actinobacteria, Bacillota, and Bacteroidota) with diet-sensitive genus-level variations. Pseudomonadota dominated both diets, but certain genera were associated with different diets: Micrococcus and Brucella in the SD versus Citrobacter and Pseudomonas in the FD. Shared genera (Klebsiella, Enterobacter, and Bacillus) may represent a core culturable community. These findings demonstrate the influence of diet on culturable gut microbes while highlighting the need for complementary molecular approaches to study unculturable taxa. The isolated strains provide resources for investigating microbial functions in insect nutrition. Full article

(This article belongs to the Special Issue Feeding Biology and Nutrition in Insects)

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14 pages, 3516 KiB

Open AccessArticle

pH-Sensitive TRPC5 Is Differentially Expressed in Various Common Skin Tumors

by Lara Hopmann, Judith Heider, Dennis Niebel, Katja Evert, Florian Zeman, Christoph M. Hammers, Tobias Ettl, Christoph Brochhausen and Stephan Schreml

Biology 2025, 14(7), 823; https://doi.org/10.3390/biology14070823 - 7 Jul 2025

Abstract

Transient receptor potential classical or cation channels (TRPCs) are integral to tumor biology, particularly in maintaining Ca²⁺ homeostasis within cancer cells. TRPC5, a pH-sensitive member of this family, may act as a signaling molecule in the altered microenvironment of solid tumors, which [...] Read more.

Transient receptor potential classical or cation channels (TRPCs) are integral to tumor biology, particularly in maintaining Ca²⁺ homeostasis within cancer cells. TRPC5, a pH-sensitive member of this family, may act as a signaling molecule in the altered microenvironment of solid tumors, which are characterized by an inverted pH-gradient—with decreased extracellular and increased intracellular pH—that promotes tumor progression. This study addresses a gap in the field, as there is currently limited research on TRPC5, particularly regarding its potential role as a tumor marker. While TRPCs are known to be involved in cancer biology, the specific role of TRPC5 in solid tumors, including its potential role as a diagnostic marker, remains largely unexplored. This study is the first to examine TRPC5 expression profiles in common skin cancers, including basal cell carcinoma (BCC), squamous cell carcinoma (SCC), malignant melanoma (MM), and nevus cell nevi (NCN). Our findings reveal that the frequency of TRPC5 expression in BCC is significantly lower compared to SCC and epidermal portions of NCN and MM. These results suggest that TRPC5 could serve as an immunohistochemical marker to distinguish SCC from BCC. Additionally, this study lays the groundwork for future research into the role of TRPC5 in tumor progression and metastasis, especially since BCCs, which rarely metastasize, are predominantly negative for TRPC5. Full article

(This article belongs to the Special Issue Ion Channels in Cancer Progression)

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16 pages, 8964 KiB

Open AccessArticle

The Regulatory Role of EvfG Through Coordinated Control of Flagellar Biosynthesis and Energy Metabolism in Porcine Extraintestinal Pathogenic Escherichia coli (ExPEC)

by Bingbing Zong, Peiyi Wang, Wei Liu, Aihua Wu, Yong Xiao, Shulin Fu, Yinsheng Qiu, Yanyan Zhang and Wentong Liu

Biology 2025, 14(7), 822; https://doi.org/10.3390/biology14070822 - 7 Jul 2025

Abstract

In this study, we found that the deletion of the gene evfG in the type VI secretion system (T6SS) gene cluster significantly affected the motility of porcine extraintestinal pathogenic Escherichia coli (ExPEC) strain PCN033. Furthermore, the bacterial motility assay showed that ΔevfG [...] Read more.

In this study, we found that the deletion of the gene evfG in the type VI secretion system (T6SS) gene cluster significantly affected the motility of porcine extraintestinal pathogenic Escherichia coli (ExPEC) strain PCN033. Furthermore, the bacterial motility assay showed that ΔevfG mutants exhibited reduced motility compared to the parental strain. Transmission electron microscopy (TEM) showed a significant reduction in the number of flagella in the mutant ΔevfG when compared with PCN033. To further explore the reasons why the deletion of evfG affects the motility of PCN033, transcriptomic and metabolomic analyses were conducted. The omics analyses showed that 134 differentially accumulated metabolites and 2236 differentially expressed genes were identified between the mutant ΔevfG and the parental strain PCN033. The metabolome profile and functional annotation analyses indicated that the impaired motility of ΔevfG was connected to the downregulation of the expression levels of genes associated with the energy metabolism pathway and flagellar assembly. Our study provides a new insight into the diminished PCN033 motility induced by evfG deletion. Moreover, the candidate genes and metabolites regulated by the gene evfG in the T6SS, which was involved in the motility of PCN033, were reported in this study. Full article

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20 pages, 1312 KiB

Open AccessArticle

Comparison of Environmental DNA Metabarcoding and Underwater Visual Census for Assessing Macrobenthic Diversity

by Zifeng Zhan, Weiwei Huo, Shangwei Xie, Wandong Chen, Xinming Liu, Kuidong Xu and Yanli Lei

Biology 2025, 14(7), 821; https://doi.org/10.3390/biology14070821 - 6 Jul 2025

Abstract

The rapid advancement of environmental DNA (eDNA) technology has transformed ecological research, particularly in aquatic ecosystems. However, the optimal sampling matrix (e.g., water or sediment) and the potential for eDNA to replace or complement traditional underwater visual census (UVC) remain unclear. Here, we [...] Read more.

The rapid advancement of environmental DNA (eDNA) technology has transformed ecological research, particularly in aquatic ecosystems. However, the optimal sampling matrix (e.g., water or sediment) and the potential for eDNA to replace or complement traditional underwater visual census (UVC) remain unclear. Here, we integrate water eDNA, sediment eDNA, and UVC approaches to systematically compare the diversity of benthic macrofauna in the subtidal zones of the Nanji Islands, China. Our results show that sediment eDNA samples exhibited the highest species richness, while UVC had the lowest. Each method revealed distinct species profiles, with relatively few shared taxa at the order level and below. Environmental eDNA showed significant advantages in detecting key phyla such as Annelida and Arthropoda. In contrast, traditional UVC was crucial for identifying certain taxa, such as Bryozoa, which were undetectable by eDNA methods. The low overlap in species detected by these methods underscores their complementary nature, highlighting the necessity of integrating multiple approaches to achieve a more comprehensive and accurate biodiversity assessment. Future research should focus on refining eDNA techniques, such as developing more universal primers, to further enhance their applicability in biodiversity monitoring. Full article

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23 pages, 12935 KiB

Open AccessArticle

Effects of Bacillus subtilis and Rhodotorula Yeast Culture on the Growth Performance, Meat Quality, Antioxidant Capacity, and Serum Metabolites in Yellow-Feathered Broilers

by Ke Wang, Xiangtan Su, Xinyu Lu, Guang Yang, Gaowei Zhang, Jiwei Chen, Jiale Sun and Aiqin Gao

Biology 2025, 14(7), 820; https://doi.org/10.3390/biology14070820 - 5 Jul 2025

Abstract

This study aimed to investigate the effects of dietary supplementation with Bacillus subtilis (BS) and Rhodotorula yeast culture (RYC) used as feed additives to study their effects on growth performance, meat quality, antioxidant capacity, and serum metabolomics in yellow-feathered broilers. A total of [...] Read more.

This study aimed to investigate the effects of dietary supplementation with Bacillus subtilis (BS) and Rhodotorula yeast culture (RYC) used as feed additives to study their effects on growth performance, meat quality, antioxidant capacity, and serum metabolomics in yellow-feathered broilers. A total of 192 one-day-old healthy yellow-feathered broilers were randomly divided into four treatment groups. The CON group was fed a basal diet, whereas the BS, RYC, and MIX groups were fed diets supplemented with 5 × 10⁹ CFU/kg BS, 5000 mg/kg RYC, and a combination of both, respectively. The experimental period comprised 56 days. In the initial stage of growth, compared with the CON group, the body weight and average daily gain of broilers in the BS group were significantly increased (p < 0.05). The BS group increased the activity of CAT and SOD in broilers at 28 days, and the activity of CAT in RYC and MIX group were also significantly increased (p < 0.05). BS could increase GSH-Px activity significantly in broilers at 56 days (p < 0.05). Moreover, in comparison with the CON group, the MIX group decreased shear force and drip loss significantly (p < 0.05). Serum metabolome analysis showed that the addition of BS or RYC alone had the greatest difference in the abundance of D-amino acid metabolism and lysine metabolism, while the combined addition of BS and RYC found that glycerophospholipid metabolism and tryptophan metabolism had the greatest difference. In conclusion, dietary addition of BS and RYC could improve the meat quality of yellow-feathered broilers. Full article

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