Biology

18 pages, 6635 KiB

Open AccessArticle

Ferroptotic Pathway Activation in Spermatogonia: A Novel Mechanism of Busulfan-Induced Testicular Injury

by Huanhuan Hu, Wenzheng Yuan, Yulin Wang, Zimei Dong and Guangwen Chen

Biology 2025, 14(6), 594; https://doi.org/10.3390/biology14060594 - 23 May 2025

Busulfan (BU) is a widely used chemotherapy drug that has been shown to cause reproductive functional impairment in humans and model animals. However, the precise mechanisms underlying testicular injury induced by BU exposure have not been fully elucidated. Ferroptosis is a form of [...] Read more.

Busulfan (BU) is a widely used chemotherapy drug that has been shown to cause reproductive functional impairment in humans and model animals. However, the precise mechanisms underlying testicular injury induced by BU exposure have not been fully elucidated. Ferroptosis is a form of programmed cell death mediated by iron-dependent lipid peroxidation. The aim of the current study was to determine whether ferroptosis was involved in BU-induced testicular injury. We demonstrated that exposure to BU led to an increase in iron content in the testes of mice. Subsequent western blotting and reverse transcription quantitative PCR, as well as staining of testicular tissue sections, confirmed that ferroptosis mediated BU-induced testicular injury. Consistent with our in vivo findings, we found that ferroptosis, including iron metabolism and the solute carrier family 7 member 11/glutathione peroxidase 4 (xCT/GPX4) signaling pathway, may play a key role in mediating BU-induced injury to GC-1 spg cells in vitro. Treatment with ferroptosis inhibitors slowed cell death caused by BU exposure. Specifically, we found that the administration of zinc protoporphyrin IX (ZnPP), a heme oxygenase 1 (HO1) inhibitor, rescued BU-induced cell death. In conclusion, our in vivo and in vitro findings confirmed that BU exposure led to testicular ferroptosis in mice via the iron intake pathway and the HO1 signaling pathway. Full article

(This article belongs to the Section Developmental and Reproductive Biology)

► Show Figures

Figure 1

19 pages, 463 KiB

Open AccessFeature PaperReview

Gut Microbiome, Neuroinflammation, and Fetal Alcohol Spectrum Disorders: Insights from Rodent Models

by Abdulrahman M. Busayli, Wenhua Xu, Ghaidaa A. Raffah and Gang Chen

Biology 2025, 14(6), 593; https://doi.org/10.3390/biology14060593 - 23 May 2025

Abstract

Fetal alcohol spectrum disorder (FASD) is a significant public health issue that affects children. It results from ethanol exposure during pregnancy, leading to considerable physical, neurodevelopmental, behavioral, and cognitive deficits. The exact mechanism is not well understood. Recently, considerable attention has been focused [...] Read more.

Fetal alcohol spectrum disorder (FASD) is a significant public health issue that affects children. It results from ethanol exposure during pregnancy, leading to considerable physical, neurodevelopmental, behavioral, and cognitive deficits. The exact mechanism is not well understood. Recently, considerable attention has been focused on the influence of gut microbiome on brain development through the gut–brain axis. Changes in the gut microbiome resulting from ethanol exposure may contribute to the pathology of FASD, potentially involving neuroinflammation. This literature review summarizes the existing research and primary animal studies on the impact of early ethanol exposure on the gut microbiome, neuroinflammation, brain development, and behavioral consequences. The evidence suggests that early ethanol exposure alters the gut microbiome, which may induce neuroinflammation, brain damage, and cognitive impairment. However, a clear causal relationship among these factors remains to be fully elucidated. Full article

(This article belongs to the Special Issue Animal Models for Disease Mechanisms)

► Show Figures

Figure 1

16 pages, 2651 KiB

Open AccessArticle

Comparative Analysis of Letrozole and Estradiol Valerate PCOS Models: Reproductive and Metabolic Outcomes with and Without High-Fat Diet

by Xóchitl Acuña Escalona, Rocio Sarahy Ayala, Karla Cortez, Sophie Fernández Sánchez, Teresa Tomé-Dehesa, Verónica Díaz-Hernández, Carlos Larqué and Rene Escalona

Biology 2025, 14(6), 592; https://doi.org/10.3390/biology14060592 - 23 May 2025

Abstract

Polycystic ovary syndrome (PCOS) is a prevalent endocrine disorder in reproductive-aged women, characterized by hyperandrogenism, oligoanovulation, and polycystic ovarian morphology. Despite its classification as a reproductive disorder, PCOS is closely associated with metabolic dysregulation, including insulin resistance and obesity. An ideal animal model [...] Read more.

Polycystic ovary syndrome (PCOS) is a prevalent endocrine disorder in reproductive-aged women, characterized by hyperandrogenism, oligoanovulation, and polycystic ovarian morphology. Despite its classification as a reproductive disorder, PCOS is closely associated with metabolic dysregulation, including insulin resistance and obesity. An ideal animal model for PCOS should replicate both reproductive and metabolic features of the condition. In this study, we compared two widely used postnatal PCOS models (letrozole and estradiol valerate [EV]) administered alone or in combination with a high-fat diet (HFD), assessing their ability to induce both the reproductive and metabolic features. Letrozole treatment led to significant weight gain and increased visceral adiposity, effects that were amplified by HFD. Conversely, EV treatment showed a tendency toward reduced body mass. While neither model significantly altered fasting glucose levels, letrozole combined with HFD impaired glucose tolerance, supporting its role in metabolic dysfunction. Hyperandrogenism was more consistently induced by letrozole compared to EV, aligning with clinical PCOS phenotypes. Both treatments disrupted estrous cyclicity and induced polycystic ovarian morphology, though metabolic disturbances were more pronounced in the letrozole model. These findings suggest that letrozole, particularly in combination with HFD, provides a more consistent model for studying both the reproductive and metabolic facets of PCOS. Full article

(This article belongs to the Special Issue Animal Models of Metabolic Diseases)

► Show Figures

Figure 1

20 pages, 5008 KiB

Open AccessArticle

Integration of Transcriptomics and Metabolomics Reveals Mechanisms of High-Temperature Stress Tolerance in the Hepatopancreas of Penaeus monodon

by Li Liu, Peng Zhao, Lishi Yang, Yundong Li, Zhong Huang, Qibin Yang, Yukai Yang, Jianzhi Shi, Yibiao Chen and Jianhua Huang

Biology 2025, 14(6), 591; https://doi.org/10.3390/biology14060591 - 23 May 2025

Abstract

High temperatures in summer often trigger disease outbreaks in shrimp, resulting in significant economic losses. To investigate the heat tolerance mechanisms of Penaeus monodon, juvenile tiger shrimp were subjected to a high-temperature stress of 38 °C for 144 h. The cumulative survival [...] Read more.

High temperatures in summer often trigger disease outbreaks in shrimp, resulting in significant economic losses. To investigate the heat tolerance mechanisms of Penaeus monodon, juvenile tiger shrimp were subjected to a high-temperature stress of 38 °C for 144 h. The cumulative survival rate of shrimp sharply decreased to 5.29% in the later 144 h. The heat-sensitive shrimps (S group) were collected in the first 24 h, while those that survived beyond 120 h were collected as the heat-tolerant group (T group). The hepatopancreas of two groups was subjected to transcriptomic and metabolomic analysis. The results revealed that, compared to the S group, the T group exhibited a total of 3527 DEGs, including 2199 upregulated and 1328 downregulated genes. Additionally, 353 DAMs were identified in the T group, with 75 metabolites showing increased levels and 278 metabolites displaying decreased levels. The results revealed that the mechanisms of heat tolerance involve energy supply strategies, immune system regulation, amino acid metabolism, and glutathione metabolism. Energy supply strategies include the digestion and absorption of carbohydrates and proteins, glycolysis/gluconeogenesis, fructose and mannose metabolism, and pyruvate metabolism, all of which collectively meet energy demands in high-temperature environments. The immune system is regulated by C-type lectin receptor pathways and IL-17 signaling pathways, which together coordinate innate immunity to prevent pathogen invasion. In amino acid metabolism, various glycogenic amino acids, such as histidine, phenylalanine, valine, and serine, are metabolized for energy, while excess ammonia is converted to γ-glutamyl-glutamate and L-glutamate to mitigate ammonia accumulation. Combined transcriptomic and metabolomic analyses further indicate that glutathione metabolism plays a crucial role in the adaptation of P. monodon to high-temperature environments. This study explains the high-temperature tolerance mechanism of P. monodon from the aspects of gene expression regulation and material metabolism regulation and also provides a scientific basis and basic data for the selection and breeding of new varieties of P. monodon with a high-temperature tolerance. Full article

► Show Figures

Figure 1

22 pages, 6009 KiB

Open AccessFeature PaperArticle

Spatio-Temporal Projections of the Distribution of the Canopy-Forming Algae Sargassum in the Western North Pacific Under Climate Change Scenarios Using the MAXENT Model

by Sun Kyeong Choi, Young Baek Son, Hyun Woo Jeong, Seonggil Go and Sang Rul Park

Biology 2025, 14(6), 590; https://doi.org/10.3390/biology14060590 - 22 May 2025

Abstract

Canopy-forming algae play an important role in coastal ecosystems because these species are highly productive and provide habitats and shelter for numerous marine organisms. Sargassum is the main genus of canopy-forming algae in the western North Pacific, but despite the importance of their [...] Read more.

Canopy-forming algae play an important role in coastal ecosystems because these species are highly productive and provide habitats and shelter for numerous marine organisms. Sargassum is the main genus of canopy-forming algae in the western North Pacific, but despite the importance of their ecological role, studies on the changes in their distribution are still scarce. Based on the present distribution of four Sargassum species, this study predicted the geographic distribution of future habitats (2030s, 2060s, and 2090s) under three Shared Socioeconomic Pathway (SSP) scenarios. The environmental variables predicted from the sixth phase of the coupled model intercomparison project (CMIP6) had different impacts depending on the species, with current velocity and water temperature showing high contributions in all four species. According to the projections, three Sargassum species (S. horneri, S. macrocarpum, and S. patens) are expected to maintain a higher habitat suitability index (HSI) and suitable habitat (MAXENT ≥ 0.4) through the 2090s under the SSP1-1.9 scenario. However, under the SSP2-4.5 and SSP5-8.5 scenarios, the HSI of the species is projected to gradually decrease in the southern coastal waters of the Korean peninsula and increase in the East Sea (North Korea), with these results intensifying under the SSP5-8.5 scenario. On the other hand, S. piluliferum was found to increase its HSI and habitat under the highest emission scenarios. All Sargassum species are predicted to shift northward from 0.8° N to 3.8° N by the 2090s under the SSP5-8.5 scenario. Although many marine protected areas exist off the coasts of South Korea and Japan, suitable Sargassum habitats were found to be located within protected reserves between 47.1% and 61.2%, depending on the scenario. These findings on Sargassum provide distributional predictions for ecological conservation strategies and provide new evidence for the need for climate change efforts. Full article

(This article belongs to the Special Issue Advances in Aquatic Ecological Disasters and Toxicology)

► Show Figures

Figure 1

32 pages, 14162 KiB

Open AccessArticle

Periplaneta americana (L.) Extract PAS840 Promotes Ischemic Stroke Recovery by Inhibiting Inflammasome Activation

by Xin Yang, Canhui Hong, Tangfei Guan, Chenggui Zhang, Yongshou Yang, Peiyun Xiao, Huai Xiao and Zhengchun He

Biology 2025, 14(6), 589; https://doi.org/10.3390/biology14060589 - 22 May 2025

Abstract

Ischemic stroke (IS) is a high-mortality, multi-complication cardiovascular disease. Reducing brain injury and promoting neuronal repair after IS onset remain important challenges for current treatments. Our team previously found that PAS840, an extract from Periplaneta americana (L.), protects nerve function; this study further [...] Read more.

Ischemic stroke (IS) is a high-mortality, multi-complication cardiovascular disease. Reducing brain injury and promoting neuronal repair after IS onset remain important challenges for current treatments. Our team previously found that PAS840, an extract from Periplaneta americana (L.), protects nerve function; this study further uses LC-MS/MS and peptidomics to analyze PAS840’s components and network pharmacology to predict its ischemic stroke (IS) therapeutic targets. We then employed Transwell, a biochemical kit, real-time quantitative polymerase chain reaction (RT-qPCR), and transcriptomics to investigate PAS840’s effects on migration ability, oxidative stress levels, and cellular pathways in mouse microglial cells (BV-2) following oxygen–glucose deprivation/reoxygenation (OGD/R) injury. Finally, using Evans blue staining, immunohistochemical analysis, and RT-qPCR, we investigated PAS840’s effects on the blood–brain barrier, inflammation pathways, and neural function in a transient middle cerebral artery occlusion (tMCAO) rat model. PAS840 components target multiple IS pathways, effectively inhibit NF-κB/NLRP3/Caspase-1/IL-1β inflammasome pathway activation in BV-2 cells following OGD/R, reduce cellular oxidative stress, inflammation, and pyroptosis, and improve cell viability and migration ability. PAS840 decreases NF-κB/NLRP3/Caspase-1/IL-1β inflammasome pathway expression in tMCAO rat brains, reduces inflammation, activates BDNF/VGF/NGR1/Erbb4 neurotrophic factor and vascular endothelial growth factor pathways, enhances neuronal cell viability, and effectively protects and repairs the blood–brain barrier. Full article

► Show Figures

Graphical abstract

29 pages, 1163 KiB

Open AccessReview

Osthole: A Coumarin with Dual Roles in Biology and Chemistry

by Min Lv, Haixia Ding and Hui Xu

Biology 2025, 14(6), 588; https://doi.org/10.3390/biology14060588 - 22 May 2025

Abstract

Osthole is a natural coumarin-like compound isolated from the Fructus cnidii. In the last few years, this plant-derived product and its derivatives have aroused much attention for their interesting biological activities, including anticancer, anti-inflammatory, neuroprotective, and insecticidal effects. This review summarizes the [...] Read more.

Osthole is a natural coumarin-like compound isolated from the Fructus cnidii. In the last few years, this plant-derived product and its derivatives have aroused much attention for their interesting biological activities, including anticancer, anti-inflammatory, neuroprotective, and insecticidal effects. This review summarizes the recent progress on the biological activities of osthole and its derivatives from 2018 to early 2025, with a focus on their total synthesis, structural modifications, and mechanisms of action. Additionally, structure–activity relationships (SARs) of osthole derivatives are presented. This review aims to serve as a comprehensive reference for future research on osthole and its derivatives in both medicinal and agricultural applications. Full article

(This article belongs to the Topic Research on Natural Bioactive Product-Based Pesticidal Agents—2nd Edition)

11 pages, 488 KiB

Open AccessArticle

Role of ACE1, ACE2, and CCR5-Δ32 Polymorphisms in the Transmission of SARS-CoV-2 to Intimate Contacts

by Maria Pina Dore, Alessandra Errigo, Elettra Merola and Giovanni Mario Pes

Biology 2025, 14(6), 587; https://doi.org/10.3390/biology14060587 - 22 May 2025

Abstract

Background. Despite the high transmissibility of SARS-CoV-2, some individuals remain uninfected despite prolonged exposure to a high viral load, suggesting the involvement of an innate resistance mechanism, possibly underpinned by the host’s genetic factors. The angiotensin-converting enzyme-1 (ACE1), ACE2, and [...] Read more.

Background. Despite the high transmissibility of SARS-CoV-2, some individuals remain uninfected despite prolonged exposure to a high viral load, suggesting the involvement of an innate resistance mechanism, possibly underpinned by the host’s genetic factors. The angiotensin-converting enzyme-1 (ACE1), ACE2, and C-C Chemokine Receptor 5 (CCR5) polymorphisms have been shown to influence susceptibility to the infection. In this study, the role of ACE1, ACE2, and CCR5 gene polymorphisms in modulating susceptibility to SARS-CoV-2 infection within the context of intimate contact was evaluated. Methods. A cohort of heterosexual couples from Northern Sardinia, characterized by a homogenous genetic background, was recruited during the initial pandemic wave (March–June 2020). In each couple, one partner (index case) tested positive for SARS-CoV-2 by at least two consecutive independent molecular tests (real-time polymerase chain reaction: RT-PCR) on nasopharyngeal swabs. Bed-sharing partners of SARS-CoV-2 positive index cases, resistant and susceptible to the infection, were genotyped for ACE1 287 bp Alu repeat insertion/deletion (I/D) polymorphism, ACE2 G8790A (rs2285666) variant, and a 32-base pair deletion (Δ32) of CCR5. Resistant and susceptible partners to the infection were compared for polymorphisms. Results. Out of 63 couples, 30 partners acquired SARS-CoV-2 infection, while 33 remained uninfected despite intimate exposure. Clinical history was minimal for current or past illnesses. SARS-CoV-2-infected index spouses and partners who acquired the infection developed a mild disease, not requiring hospitalization. The observed distribution of ACE1 I/D and ACE2 G8790A genotypes was consistent with previously reported frequencies in Sardinia and across European populations. None of the study participants carried the CCR5-Δ32 variant. No statistically significant differences (p > 0.05) in the allelic or genotypic frequencies of these polymorphisms were observed between the infected and resistant partners. Conclusions. No differences in the distribution of ACE1, ACE2, and CCR5 polymorphisms between the two groups were detected. These findings suggest that resistance is likely multifactorial, involving a complex interplay of genetic, immunological, and environmental factors. Full article

(This article belongs to the Section Infection Biology)

16 pages, 4133 KiB

Open AccessProtocol

The Optimization of a Protocol for the Directed Differentiation of Induced Pluripotent Stem Cells into Liver Progenitor Cells and the Delivery of Transgenes

by Irina Panchuk, Valeriia Kovalskaia, Natalia Balinova, Oxana Ryzhkova and Svetlana Smirnikhina

Biology 2025, 14(6), 586; https://doi.org/10.3390/biology14060586 - 22 May 2025

Abstract

The liver plays a pivotal role in metabolism, detoxification, and protein synthesis and comprises several cell types, including hepatocytes and cholangiocytes. Primary human hepatocytes in 2D cultures rapidly dedifferentiate and lose their function, making their use as a reliable cell model challenging. Therefore, [...] Read more.

The liver plays a pivotal role in metabolism, detoxification, and protein synthesis and comprises several cell types, including hepatocytes and cholangiocytes. Primary human hepatocytes in 2D cultures rapidly dedifferentiate and lose their function, making their use as a reliable cell model challenging. Therefore, developing robust three-dimensional cell culture models is crucial, especially for diseases lacking reliable animal models. The aim of this study was to optimize a protocol for the directed differentiation of induced pluripotent stem cells into liver progenitor cells, achieving the high-level expression of specific markers. As a result, we established a 2D culture of liver progenitor cells capable of differentiating into three cell types: a 3D organoid culture containing hepatocyte- and cholangiocyte-like cells and a 2D cell culture comprising stellate-like cells. To evaluate gene delivery efficiency, liver progenitor cells were transduced with various rAAV serotypes carrying an eGFP reporter cassette at different multiplicities of infection (MOIs). Our results revealed that rAAV serotype 2/2 at MOI of 100,000 achieved the highest transduction efficiency of 93.6%, while electroporation demonstrated a plasmid delivery efficiency of 54.3%. These findings suggest that liver progenitor cells are a promising tissue-like cell model for regenerative medicine and demonstrate high amenability to genetic manipulation, underscoring their potential in gene therapy and genome editing studies. Full article

(This article belongs to the Section Cell Biology)

► Show Figures

Graphical abstract

23 pages, 1452 KiB

Open AccessFeature PaperArticle

Effect of Two Different Pretreatments of Brewers Spent Grain Used as Feed Ingredient on Nutritional, Immunological, and Metabolical Parameters in Gilthead Seabream (Sparus aurata)

by Francisca P. Martínez-Antequera, Paula Simó-Mirabet, Verónica de las Heras, Marta Román, Juan Miguel Mancera, Juan Antonio Martos-Sitcha and Francisco J. Moyano

Biology 2025, 14(6), 585; https://doi.org/10.3390/biology14060585 - 22 May 2025

Abstract

Brewer’s spent grain (BSG), the primary byproduct generated by the brewing industry, holds significant potential as an ingredient in aquafeeds. However, its high content of non-starch polysaccharides (NSP) restricts the amount that can be incorporated into fish diets. To address these limitations, various [...] Read more.

Brewer’s spent grain (BSG), the primary byproduct generated by the brewing industry, holds significant potential as an ingredient in aquafeeds. However, its high content of non-starch polysaccharides (NSP) restricts the amount that can be incorporated into fish diets. To address these limitations, various pretreatment methods (physical, chemical, or enzymatic) can be applied prior to its inclusion in feed formulations. The objectives of the present study were (i) to optimize the conditions for enzymatic or microwave pretreatments to enhance the nutritional and functional profile of BSG, (ii) to determine the bioaccessibility and availability of specific nutrients and antioxidant compounds in diets including a high amount of BSG (pretreated or not) using an in vitro assay simulating the digestion of the gilthead seabream (Sparus aurata), and (iii) to evaluate the effect of such diet pretreatments on growth, metabolism, intestinal microbiota, and oxidative status in live fish. For this study, three experimental diets were formulated: one containing 20% untreated BSG (C) and two containing the same amount of BSG pretreated either enzymatically (H) or with microwave heating (MW). Each diet was administered ad libitum to triplicate groups of 22 juvenile sea bream (mean weight 60 g) over a period of three months. The results indicated that the microwave-treated BSG led to improved growth (0.69 ± 0.02%) and feed efficiency (0.80 ± 0.02 weight gain/total feed intake) and enhanced immune status (alkaline phosphatase activity = 11,811.68 ± 3426.92 U/mg SP), compared to the control diet (SGR = 0.59 ± 0.06%; FE: 0.68 ± 0.03 weight gain/total feed intake; alkaline phosphatase activity = 8590.29 ± 3663.44 U/mg SP). Moreover, fish fed on both pretreated BSG diets exhibited significant differences in metabolic parameters and functional profile of their intestinal microbiota when compared to the control group. Consequently, the findings suggest that the pretreatment of BSG, whether by enzymatic or microwave methods, results in notable differences in its nutritional value and the bioavailability of functional components, which, in turn, have a substantial impact on the growth and metabolism of gilthead seabream. Full article

(This article belongs to the Special Issue Aquatic Animal Nutrition and Feed)

► Show Figures

Figure 1

10 pages, 1221 KiB

Open AccessFeature PaperArticle

Evaluating a Rapid Immunity Test to Predict Dairy Calf Mortality Risk

by Ansley M. Roper, Caroline Guzi Savegnago, Thiago N. Marins, Jing Gao, Rui Xie, Sha Tao and Qun Huo

Biology 2025, 14(6), 584; https://doi.org/10.3390/biology14060584 - 22 May 2025

Abstract

The study objective was to compare the ability of Brix values and the D2Dx immunity test to predict the mortality risk of calves under 30 days of age. Heifer calves at 2–3 days of age were enrolled from two farms: Farm A, which [...] Read more.

The study objective was to compare the ability of Brix values and the D2Dx immunity test to predict the mortality risk of calves under 30 days of age. Heifer calves at 2–3 days of age were enrolled from two farms: Farm A, which has a low calf mortality rate (n = 849, 2.9% mortality), and Farm B, which has a high calf mortality rate (n = 698, 11.7% mortality). Serum samples were collected from the calves when they were 2–3 days of age. The D2Dx scores and Brix values of serum samples were compared between calves that died or survived between 3–30 days of age. For both farms, calves that survived their first 30 days of life had greater serum Brix values (9.05 vs. 8.48, p = 0.002 for Farm A; 9.26 vs. 8.99, p = 0.05 for Farm B) and D2Dx scores (0.0281 vs. 0.0036, p < 0.001 for Farm A; 0.0342 vs. 0.0286, p = 0.05 for Farm B) at 2–3 days of age compared with calves that died. On Farm A, the D2Dx score shows significantly better sensitivity (96% vs. 48%) and Area Under the Curve (0.87 vs. 0.69) than the Brix value in predicting calf mortality. However, similar results were not observed for the high-mortality farm (Farm B) due to other factors in addition to calf immune status that influenced calf survival. This study concludes that the D2Dx immunity test can be used to identify newborn dairy calves with low immunity and increased mortality risk; however, the prediction is most effective if no other risk factors are involved. Full article

(This article belongs to the Special Issue Immune Response Regulation in Animals)

► Show Figures

Figure 1

12 pages, 1422 KiB

Open AccessArticle

Sources of the Deposition of Submicron Soot Particles on Plant Leaves

by Qingyang Liu

Biology 2025, 14(6), 583; https://doi.org/10.3390/biology14060583 - 22 May 2025

Abstract

Submicron soot particles (with an aerodynamic diameter of less than 1.0 μm) are found to be one of the major factors resulting in global warming and health burdens. However, research on the biomonitoring of submicron soot particles and their associated sources using tree [...] Read more.

Submicron soot particles (with an aerodynamic diameter of less than 1.0 μm) are found to be one of the major factors resulting in global warming and health burdens. However, research on the biomonitoring of submicron soot particles and their associated sources using tree leaves has not been comprehensively conducted. This study investigated the seasonal trends of submicron soot particles on the leaves of seven tree types collected from four individual seasons across two years in Nanjing, in the Yangtze River Delta region of China, and performed source apportionment using stable carbon isotope analysis. Significant seasonal variations in submicron soot particles were observed on tree leaves of seven tree types, with average levels of 0.3 to 0.5 mg m⁻² during summer and 0.5 to 1.3 mg m⁻² during winter. The levels of submicron soot particles varied significantly across various tree types. In contrast, the levels of δ¹³C were not found to change significantly across different types. The levels of δ¹³C ranged from −26.3‰ to −20.9‰ in winter and from −24.0‰ to −18.1‰ in summer, with fossil fuels accounting for 56% and 78% of submicron soot in winter and summer on average, respectively. These results demonstrate that tree leaves can serve as a low-cost and effective biomonitoring tool for assessing the source status of submicron soot. Full article

(This article belongs to the Section Ecology)

► Show Figures

Figure 1

13 pages, 885 KiB

Open AccessArticle

Humulus lupulus Promoting Osteoblast Activity and Bone Integrity: Effects and Mechanisms

by Nahuel Ezequiel Wanionok, Germán Andrés Colareda and Juan Manuel Fernandez

Biology 2025, 14(5), 582; https://doi.org/10.3390/biology14050582 - 21 May 2025

Abstract

Osteoporosis is characterized by an imbalance between bone formation and resorption, leading to decreased bone mass and an increased fracture risk, mainly associated with aging. Current treatments include anti-resorptive and anabolic drugs. However, these often have side effects, leading many patients to seek [...] Read more.

Osteoporosis is characterized by an imbalance between bone formation and resorption, leading to decreased bone mass and an increased fracture risk, mainly associated with aging. Current treatments include anti-resorptive and anabolic drugs. However, these often have side effects, leading many patients to seek natural biological alternatives. We have demonstrated previously that hops extract, rich in compounds with estrogenic activity classified as phytoestrogens, exerts osteogenic effects by promoting the osteoblastic differentiation of bone marrow stem cells (BMSCs) while inhibiting osteoclast activity in vitro. In our study, young male Sprague Dawley rats were randomized into two groups: one received hops extract (LPL, 1% w/v in drinking water) for two months, and the other drank water alone (C). The rats were euthanized, and their femurs were dissected and processed for static histomorphometry and bone biomechanics. Additionally, BMSCs were isolated from the humeri to evaluate their osteogenic potential. Our result demonstrated that LPL treatment enhanced the osteogenic potential of humeral BMSCs in ex vivo assays, upregulating osteogenic genes and downregulating pro-resorptive markers. These findings correlated with improved femoral bone microarchitecture and biomechanical parameters. In conclusion, a two-month treatment with LPL enhanced the osteogenic capacity of BMSCs, improving bone microarchitecture and biomechanical properties. These results suggest its potential as a natural alternative for promoting bone health. Full article

(This article belongs to the Special Issue Osteoblast Differentiation in Health and Disease)

► Show Figures

Figure 1

15 pages, 3646 KiB

Open AccessArticle

Changes in the Distribution Range of the Genus Cardiocrinum in China Under Climate Change and Human Activities

by Yuxin Zhang, Shujian Zhang, Haiyan Xiao, Heng Li, Da Liao, Yuxi Xue, Xinyi Huang, Qitao Su and Yian Xiao

Biology 2025, 14(5), 581; https://doi.org/10.3390/biology14050581 - 21 May 2025

Abstract

Cardiocrinum are perennial herbaceous plants of the Liliaceae family with high ornamental, nutritional, and medicinal value. However, critical knowledge gaps remain regarding the following: (1) the fine-scale habitat preferences of Cardiocrinum; (2) the key ecological drivers influencing their growth and distribution. The [...] Read more.

Cardiocrinum are perennial herbaceous plants of the Liliaceae family with high ornamental, nutritional, and medicinal value. However, critical knowledge gaps remain regarding the following: (1) the fine-scale habitat preferences of Cardiocrinum; (2) the key ecological drivers influencing their growth and distribution. The MaxEnt software 3.4.1 was used to simulate the current and future suitable habitats of Cardiocrinum, evaluate the impacts of environmental changes on its distribution, and determine the distribution changes under climate change scenarios. The AUC value of the model used in the current study was >0.98, which indicates that the model had good accuracy. The results show that as a typical understory herb, precipitation in the warmest quarter (bio18) and temperature seasonality (bio04) are the main factors affecting the distribution of Cardiocrinum. In addition, Cardiocrinum giganteum and Cardiocrinum giganteum var. yunnanense are also affected by slope and human activity. Under the SSP126, SSP245, and SSP585 climate scenarios, the suitable habitat areas of Cardiocrinum cathayanum and C. giganteum showed an increasing trend. The suitable habitat area of C. giganteum var. yunnanense increased under the SSP126 climate scenario; however, it substantially declined in SSP245 and SSP585 scenarios. The distribution area of Cardiocrinum shifted to higher latitudes. The centroid of C. cathayanum shifted more than 5 degrees of latitude during SSP585 2081s, while the centroid of C. giganteum and C. giganteum var. yunnanense did not shift more than 2 degrees of latitude. In addition, the centroid longitudes of C. giganteum and C. giganteum var. yunnanense shifted westward under the three climate scenarios. There is ecological niche differentiation among C. cathayanum and others, whilst C. giganteum and C. giganteum var. yunnanense have overlapping ecological niches. In the future, we will strengthen the protection of wild Cardiocrinum resources in accordance with environmental factors and suitable habitats for Cardiocrinum. Full article

► Show Figures

Figure 1

16 pages, 2895 KiB

Open AccessArticle

Genome-Wide-Association-Analysis-Based Identification of Genetic Loci and Candidate Genes Associated with Cold Germination in Sweet Corn

by Changjin Wang, Yulin Yu, Jie Liu, Ahmad Rizwan, Zain Abbas, Haibing Yu and Xinxin Cheng

Biology 2025, 14(5), 580; https://doi.org/10.3390/biology14050580 - 21 May 2025

Abstract

Sweet corn is highly susceptible to low temperatures, especially during seed germination, which severely affects plant growth and crop yield. This study used 100 sweet corn micro-core germplasms to evaluate two key germination traits under cold stress: seed storage material utilization efficiency (SRUE) [...] Read more.

Sweet corn is highly susceptible to low temperatures, especially during seed germination, which severely affects plant growth and crop yield. This study used 100 sweet corn micro-core germplasms to evaluate two key germination traits under cold stress: seed storage material utilization efficiency (SRUE) and mobilization weight (WMSR). To investigate the genetic basis of cold germination in sweet corn, we selected the BLINK model for GWAS due to its ability to minimize false positives. A total of nine SNPs were found to be significantly associated with cold germination. These SNPs explained between 9.8% and 17.2% of the phenotypic variance (PVE). Within the confidence interval, 63 functionally annotated genes were identified. Fourteen candidate genes associated with cold germination were identified through GO functional analysis and the functional expression of homologous genes. A literature analysis indicated that these genes are primarily involved in seed germination, cold tolerance, and responses to other abiotic stresses. These findings enhance our understanding of the genetic and molecular mechanisms underlying cold germination, establishing a theoretical foundation for breeding cold-tolerant sweet corn varieties. Full article

(This article belongs to the Section Plant Science)

► Show Figures

Figure 1

20 pages, 8218 KiB

Open AccessArticle

Integrative Transcriptomic Profiling Identifies TNF and IL1B as Candidate Key Early-Response Genes in Macrophages Infected with Smooth Brucella Using a Comprehensive Bioinformatic Approach

by Xiaoyu Yang and Qiang Chen

Biology 2025, 14(5), 579; https://doi.org/10.3390/biology14050579 - 21 May 2025

Abstract

Smooth Brucella are the main pathogenic bacteria that threaten human health and food safety. The early stage of smooth Brucella and macrophage interaction is an important phase, and smooth Brucella species elicit a dramatic transcriptional response in infected macrophages. However, the key transcriptional [...] Read more.

Smooth Brucella are the main pathogenic bacteria that threaten human health and food safety. The early stage of smooth Brucella and macrophage interaction is an important phase, and smooth Brucella species elicit a dramatic transcriptional response in infected macrophages. However, the key transcriptional events are still obscure. This study aimed to identify key candidate response pathways and genes in macrophages infected with smooth Brucella at the early interaction stage. Three gene expression profiles including GSE21117, GSE5202, and GSE8385 were retrieved from the NCBI GEO database, and were integrated using comprehensive bioinformatics methods including gene set enrichment analysis, differentially expressed gene analysis, protein and protein interaction (PPI) network construction, and transcription factor prediction. The results showed that 16 up-regulated and 22 down-regulated pathways were identified, including six up-regulated immune-related pathways. A total of 41 up-regulated and four down-regulated genes were identified, and a PPI network including 31 nodes and 134 edges was constructed based on the interactive information of 45 dysregulated genes. A highly correlated module comprising 19 nodes and 103 edges was identified based on the topological features of the whole PPI network. Seven centrality analyses revealed that Tnf and Il1b were essential genes in the highly correlated module, and that the two essential genes were simultaneously enriched in eight significantly up-regulated pathways (including two immune-related pathways). Bcl3 was predicted as a transcription factor in the highly correlated module, and may play regulatory roles in the transcription of Tnf and Il1b genes. The present study identified Tnf and IL1b as candidate key response genes in infected macrophages at the early stage of smooth Brucella and macrophage interaction, which contributes to a deeper understanding of the early key transcriptional events in macrophages infected with smooth Brucella species. Full article

(This article belongs to the Special Issue Zoonotic Diseases)

► Show Figures

Figure 1

21 pages, 2608 KiB

Open AccessArticle

Phytoplankton Structure and Ecological Niche Differentiation of Dominant Species in Tahe Bay, China

by Yanrong Zhang, Zengqiang Yin, Yinghai Du, Xiangxu Wei, Yikai Lan, Quan Yu, Yan Wang, Tao Tian, Lei Chen and Jun Yang

Biology 2025, 14(5), 578; https://doi.org/10.3390/biology14050578 - 21 May 2025

Abstract

Phytoplankton serve as crucial producers in marine ecosystems, and their community composition and populations’ dispersion directly or indirectly influence the productivity of marine waters via the trophic cascade effect within the food chain. A survey was undertaken in September 2021 and March, April, [...] Read more.

Phytoplankton serve as crucial producers in marine ecosystems, and their community composition and populations’ dispersion directly or indirectly influence the productivity of marine waters via the trophic cascade effect within the food chain. A survey was undertaken in September 2021 and March, April, and November 2022 to examine the phytoplankton structure and the environmental variables influencing ecological niche differentiation in the waters of Tahe Bay in Lushun, Dalian city, China. The findings indicated that there are 83 species representing forty-one genera and six phyla, with an annual mean abundance of 22.13 × 10⁴ ind·m⁻³, predominantly represented by Bacillariophyta (65 species, constituting 78.31% of the total species). The phytoplankton richness indices varied from 0.83 to 4.99, diversity indices ranged from 2.03 to 2.80, and evenness indices spanned from 0.28 to 0.84. Pearson’s correlation between phytoplankton abundance and community diversity with environmental parameters, including water temperature, salinity, pH, DO, NH₃-N, and NO₃-N, was substantial in Tahe Bay’s waters. The dominant species, comprising 20 species across three phyla, primarily include broad-niche species, with Paralia sulcata being the most prevalent species, except during summer. The extent of ecological niche overlap among the dominant species varied by season, exhibiting 40.0% severe overlap in September 2021, 100.0% severe overlap in March 2022, 93.0% severe overlap in April 2022, and 58.0% severe overlap in November 2022. The findings of redundancy analysis (RDA) and canonical correspondence analysis (CCA) revealed that COD, water temperature, NO₃-N, DIP, NO₂-N, and NH₃-N are the primary environmental variables influencing the ecological niche differentiation of dominant species of phytoplankton. The results of the study elucidate the alteration rules of dominant species and the stability of the community structure of the phytoplankton community in this sea area, thereby offering a theoretical foundation for the scientific assessment of the ecological health of the area and the sustainable utilization of marine biological resources. Full article

(This article belongs to the Special Issue Global Fisheries Resources, Fisheries, and Carbon-Sink Fisheries)

► Show Figures

Figure 1

16 pages, 3478 KiB

Open AccessArticle

The Population Density, Interspecific Territoriality, and Philopatry of Shrikes (Laniidae) and Bushshrikes (Malaconotidae) in a Mosaic of Natural and Human-Modified Acacia Savanna

by Grzegorz Kopij

Biology 2025, 14(5), 577; https://doi.org/10.3390/biology14050577 - 20 May 2025

Abstract

In avian behavioural and spatial ecology, issues related to population density, territoriality, and philopatry are especially important. These are often interrelated. The aim of this study was to analyse these behaviours in shrikes inhabiting an acacia savanna in northern Namibia (400 ha). Population [...] Read more.

In avian behavioural and spatial ecology, issues related to population density, territoriality, and philopatry are especially important. These are often interrelated. The aim of this study was to analyse these behaviours in shrikes inhabiting an acacia savanna in northern Namibia (400 ha). Population densities of one shrike and four bushshrike species were studied by means of the territory mapping method. About half of the study area had been modified by humans into cultivated fields, orchards, sport fields, and human settlements. This study was conducted in 2012/2013, 2017/2018, and 2019/2020. The most common species were the Black-backed Puffback (2.5 pairs/100 ha) and Crimson-breasted Shrike (1.9); the least common were the Southern White-crowned Shrike (0.8) and Brubru (1.0). Statistics for the Brown-crowned Tchagra indicated a density of 1.5 pairs/100 ha. While the density of the Brown-crowned Tchagra and Brubru remained stable over the years, the population densities of the Black-backed Shrike, Crimson-breasted Shrike, and Southern White-crowned Shrike showed a remarkable increase over the years 2012–2020. All bushshrike species showed a preference for patches of natural savanna vegetation. This was especially evident in the Crimson-breasted Shrike and the Brubru. However, the Southern White-crowned Shrike from the shrike family did not show this preference. The presented studies showed marked interspecific differences in territoriality and philopatry. Furthermore, even within the same species, marked temporal differences were shown in population density, probably also in philopatry. Within families, these behaviours may shape both resource competition and mate competition, while between families, these behaviours only shape resource competition. Full article

(This article belongs to the Special Issue Bird Biology and Conservation)

► Show Figures

Figure 1

18 pages, 2559 KiB

Open AccessArticle

Unveiling Prophage Diversity and Host Interactions in Liberibacter: Genomic Insights for Phage Therapy Against Citrus Huanglongbing

by Hui Yin, Jiaxing Wan, Siyu Zhang, Zhuozhuo Wu, Wanshan Zhang and Yuxia Gao

Biology 2025, 14(5), 576; https://doi.org/10.3390/biology14050576 - 20 May 2025

Abstract

HLB is a severe and devastating disease affecting citrus plants, for which no cure is currently available. The pathogen CLas is an unculturable, phloem-limited α-proteobacterium associated with HLB. Phages, known for their ability to directly lyse pathogenic bacteria, have been widely recognized as [...] Read more.

HLB is a severe and devastating disease affecting citrus plants, for which no cure is currently available. The pathogen CLas is an unculturable, phloem-limited α-proteobacterium associated with HLB. Phages, known for their ability to directly lyse pathogenic bacteria, have been widely recognized as effective control agents in both medical and agricultural fields. In this study, we identified 191 prophages across 48 Liberibacter genomes using comparative genomics and phylogenetic methods. These prophages were classified into 17 distinct types, with 13 novel types, named NF1 to NF13. Diversity analysis revealed that the number of prophages per genome ranged from one to eight, with an average of four. Annotation showed that the genome sizes of NF1–NF13 ranged from 10,160 bp to 72,736 bp, with an average size of 27,616 bp, containing between 7 and 66 genes (average: 27 genes). Further functional enrichment of the sequences within 5 kb upstream and downstream of the integration site identified six main aspects, involving four core biological processes: genome structure modification, gene expression regulation, stress response activation, and metabolic pathway modulation. It is speculated that the insertion of the prophage significantly impacts the host. Six virulence factors, including carB, clpC, flhA, algW, rffG, and IlpA, were identified in the prophages. Interestingly, prophages containing carB or clpC are predominantly found in CLas, which may contribute to the global colonization of CLas. Notably, among the 35 identified Type 4 prophages, 19 were found to be active. Type 4 is the only active prophage type, making it a promising candidate for developing phage therapy against CLas. This study is significant for a deeper understanding of the diversity of Liberibacter and the interactions between prophages and their hosts. Full article

► Show Figures

Figure 1

Journal Description

Biology

Latest Articles

Journal Menu

Journal Browser

Highly Accessed Articles

Latest Books

E-Mail Alert

News

Topics

Conferences

Special Issues

Topical Collections

Further Information

Guidelines

MDPI Initiatives

Follow MDPI