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5,539 Results Found

  • Article
  • Open Access
1 Citations
1,986 Views
13 Pages

Liver Transcriptome Analysis Reveals the Mechanisms of Metabolic Adaptation of Xizang Sheep to Seasonal Changes

  • Jianzhao Cui,
  • Junru Pan,
  • Fengbo Sun,
  • Nan Zhang and ,
  • Jiacuo Jinmei,
  • Yang Zhen,
  • Ciren Puchi,
  • Luo Snag,
  • Zengqiang Liu and
  • Yangzong Zhaxi
  • + 6 authors+ 1 author

19 November 2024

Background/Objectives: The Xizang sheep is a unique breed of sheep in the highland regions of China that has gradually developed physiological characteristics adapted to the plate environment through long-term natural selection and artificial breedin...

(This article belongs to the Special Issue Metabolites in Ruminant Health)
  • Article
  • Open Access
3 Citations
2,469 Views
14 Pages

Transcriptomic Analysis of Flower Color Changes in Impatiens uliginosa in Response to Copper Stress

  • Yi Tan,
  • Xiaoli Zhang,
  • Qinmei Li,
  • Xinyi Li and ,
  • Liang Luo,
  • Haihao He,
  • Guangrong Liang,
  • Haiquan Huang and
  • Meijuan Huang
  • + 4 authors+ 0 author

Impatiens uliginosa is a native and potential water body-restoring ornamental plant. In this study, RNA-Seq technology was used to analyze the transcriptome of its floral organs. Candidate genes related to flower color changes under copper stress wer...

(This article belongs to the Special Issue Physiological and Molecular Biology Research on Ornamental Flower)
  • Article
  • Open Access
2 Citations
5,162 Views
11 Pages

15 February 2019

Poplars are widely distributed in the northern hemisphere and have good adaptability to different living environments. The accumulation of genome and transcriptome data provides a chance to conduct comparative genomics and transcriptomics analyses to...

(This article belongs to the Special Issue Effects of Climate Change and Air Pollutants on Forest Tree Species)
  • Article
  • Open Access
29 Citations
6,178 Views
29 Pages

Estradiol-17β-Induced Changes in the Porcine Endometrial Transcriptome In Vivo

  • Piotr Kaczynski,
  • Stefan Bauersachs,
  • Monika Baryla,
  • Ewelina Goryszewska and ,
  • Jolanta Muszak,
  • Waldemar J. Grzegorzewski and
  • Agnieszka Waclawik
  • + 2 authors+ 0 author

Estradiol-17β (E2) is a key hormone regulating reproductive functions in females. In pigs, E2, as the main conceptus signal, initiates processes resulting in prolonged corpus luteum function, embryo development, and implantation. During early pr...

(This article belongs to the Special Issue Embryo-Maternal Interactions Underlying Reproduction in Mammals)
  • Article
  • Open Access
3 Citations
4,605 Views
11 Pages

Vitellogenesis in Blue Gourami is Accompanied by Brain Transcriptome Changes

  • Gad Degani,
  • Amir Alon,
  • Akram Hajouj and
  • Ari Meerson

29 October 2019

The blue gourami (Trichogaster trichopterus) is a model for hormonal control of reproduction in Anabantidae fish, but also relevant to other vertebrates. We analyzed the female blue gourami brain transcriptome in two developmental stages: pre-vitello...

  • Article
  • Open Access
9 Citations
4,419 Views
17 Pages

Peppers in Diet: Genome-Wide Transcriptome and Metabolome Changes in Drosophila melanogaster

  • Carlos Lopez-Ortiz,
  • Mary Edwards,
  • Purushothaman Natarajan,
  • Armando Pacheco-Valenciana and ,
  • Padma Nimmakayala,
  • Donald A. Adjeroh,
  • Cristian Sirbu and
  • Umesh K. Reddy
  • + 3 authors+ 0 author

1 September 2022

The habanero pepper (Capsicum chinense) is an increasingly important spice and vegetable crop worldwide because of its high capsaicin content and pungent flavor. Diets supplemented with the phytochemicals found in habanero peppers might cause shifts...

(This article belongs to the Special Issue Role of Drosophila in Human Disease Research 3.0)
  • Communication
  • Open Access
43 Citations
6,032 Views
12 Pages

Pain-Associated Transcriptome Changes in Synovium of Knee Osteoarthritis Patients

  • Anna Bratus-Neuenschwander,
  • Francesc Castro-Giner,
  • Mojca Frank-Bertoncelj,
  • Sirisha Aluri and ,
  • Sandro F. Fucentese,
  • Ralph Schlapbach and
  • Haiko Sprott
  • + 2 authors+ 0 author

4 July 2018

Joint pain causes significant morbidity in osteoarthritis (OA). The aetiology of joint pain in OA is not well understood. The synovial membrane as an innervated joint structure represents a potential source of peripheral pain in OA. Here we analyse,...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
11 Citations
3,961 Views
24 Pages

Transcriptome Changes in Glioma Cells Cultivated under Conditions of Neurosphere Formation

  • Natalia S. Vasileva,
  • Elena V. Kuligina,
  • Maya A. Dymova,
  • Yulya I. Savinovskaya and ,
  • Nikita D. Zinchenko,
  • Alisa B. Ageenko,
  • Sergey V. Mishinov,
  • Anton S. Dome,
  • Grigory A. Stepanov and
  • Dmitry V. Semenov
  • + 6 authors+ 1 author

2 October 2022

Glioma is the most common and heterogeneous primary brain tumor. The development of a new relevant preclinical models is necessary. As research moves from cultures of adherent gliomas to a more relevant model, neurospheres, it is necessary to underst...

(This article belongs to the Section Cellular Neuroscience)
  • Article
  • Open Access
3 Citations
2,224 Views
15 Pages

Induction of Triploid Grass Carp (Ctenopharyngodon idella) and Changes in Embryonic Transcriptome

  • Zixuan E,
  • Han Wen,
  • Yingshi Tang,
  • Mingqing Zhang and ,
  • Yaorong Wang,
  • Shujia Liao,
  • Kejun Chen,
  • Danqi Lu,
  • Haoran Lin and
  • Shuisheng Li
  • + 8 authors+ 3 authors

22 July 2025

Grass carp is an economically important cultured species in China. Triploid embryo production is widely applied in aquaculture to achieve reproductive sterility, improve somatic growth, and reduce ecological risks associated with uncontrolled breedin...

(This article belongs to the Section Aquatic Animals)
  • Article
  • Open Access
6 Citations
2,049 Views
17 Pages

A Preliminary Exploration of Transcriptome and Proteomic Changes During the Young and Harvest Periods in Morchella sextelata

  • Weilin Feng,
  • Zier Guo,
  • Qunli Jin,
  • Fei Xu and ,
  • Yingyue Shen,
  • Tingting Song,
  • Mei Wang,
  • Jun Zhang,
  • Lijun Fan and
  • Weiming Cai
  • + 6 authors+ 1 author

2 March 2025

Based on transcriptome and proteome sequencing technologies, this study aims to preliminarily reveal the molecular mechanisms of growth and development and related metabolic regulation in Morchella sextelat. A total of 42.31 GB of Clean Data was acqu...

(This article belongs to the Special Issue Breeding and Metabolism of Edible Fungi)
  • Article
  • Open Access
12 Citations
9,272 Views
30 Pages

Transcriptome Changes during the Life Cycle of the Red Sponge, Mycale phyllophila (Porifera, Demospongiae, Poecilosclerida)

  • Fan Qiu,
  • Shaoxiong Ding,
  • Huilong Ou,
  • Dexiang Wang and ,
  • Jun Chen and
  • Michael M. Miyamoto
  • + 1 author+ 0 author

20 October 2015

Sponges are an ancient metazoan group with broad ecological, evolutionary, and biotechnological importance. As in other marine invertebrates with a biphasic life cycle, the developing sponge undergoes a significant morphological, physiological, and e...

(This article belongs to the Section Population and Evolutionary Genetics and Genomics)
  • Review
  • Open Access
37 Citations
6,838 Views
10 Pages

25 November 2016

Hypertension originates from early-life insults by so-called “developmental origins of health and disease” (DOHaD). Studies performed in the previous few decades indicate that fructose consumption is associated with an increase in hypertension rate....

(This article belongs to the Special Issue Dietary Fructose and Glucose: The Multifacetted Aspects of their Metabolism and Implication for Human Health)
  • Article
  • Open Access
9 Citations
4,252 Views
15 Pages

Adverse Effects of Methylglyoxal on Transcriptome and Metabolic Changes in Visceral Adipose Tissue in a Prediabetic Rat Model

  • Martina Hüttl,
  • Irena Markova,
  • Denisa Miklankova,
  • Pavol Makovicky and ,
  • Terezie Pelikanova,
  • Ondrej Šeda,
  • Lucie Šedová and
  • Hana Malinska
  • + 3 authors+ 0 author

31 August 2020

Excessive methylglyoxal (MG) production contributes to metabolic and vascular changes by increasing inflammatory processes, disturbing regulatory mechanisms and exacerbating tissue dysfunction. MG accumulation in adipocytes leads to structural and fu...

(This article belongs to the Special Issue Reactive Carbonyl Species and Protein Adducts: Identification Strategies, Biological Mechanisms and Molecular Approaches for Their Detoxification)
  • Article
  • Open Access
953 Views
20 Pages

Bronchial Thermoplasty Induced Changes in Blood Transcriptome Profile of Patients with Severe Asthma

  • Sofi M. Vassileva,
  • Jelle M. Blankestijn,
  • Annika W. M. Goorsenberg,
  • Shahriyar Shahbazi Khamas and ,
  • Stefania Principe,
  • Mahmoud I. Abdel-Aziz,
  • Abilash Ravi,
  • Lizan D. Bloemsma,
  • Els J. M. Weersink and
  • Peter I. Bonta
  • + 9 authors+ 4 authors

Bronchial thermoplasty (BT) is a non-pharmacological treatment for severe asthma. The working mechanism and response determinants of BT remain partly unknown. This study aims to investigate whether a systemic transcriptomic response to BT can be dete...

(This article belongs to the Special Issue Understanding Allergy and Asthma at the Molecular Level)
  • Article
  • Open Access
4 Citations
3,270 Views
15 Pages

Endocrine and Transcriptome Changes Associated with Testicular Growth and Differentiation in Atlantic Salmon (Salmo salar L.)

  • Vetle Skjold,
  • Sergey Afanasyev,
  • Erik Burgerhout,
  • Lene Sveen and ,
  • Kjell-Arne Rørvik,
  • Vasco Felipe Cardoso Neves Mota,
  • Jens-Erik Dessen and
  • Aleksei Krasnov
  • + 3 authors+ 0 author

Sexual maturation of Atlantic salmon males is marked by dramatic endocrine changes and rapid growth of the testes, resulting in an increase in the gonad somatic index (GSI). We examined the association of gonadal growth with serum sex steroids, as we...

(This article belongs to the Section Biochemistry, Molecular and Cellular Biology)
  • Article
  • Open Access
11 Citations
5,217 Views
11 Pages

Liver Transcriptome Changes of Hyla Rabbit in Response to Chronic Heat Stress

  • Zhou-Lin Wu,
  • Xue Yang,
  • Shi-Yi Chen,
  • Fei-Long Deng and ,
  • Xian-Bo Jia,
  • Shen-Qiang Hu,
  • Jie Wang and
  • Song-Jia Lai
  • + 3 authors+ 0 author

13 December 2019

Rabbit is an economically important farm animal in China and also is a widely used animal model in biological researches. Rabbits are very sensitive to the environmental conditions, therefore we investigated the liver transcriptome changes in respons...

(This article belongs to the Special Issue Disease and Immunology of Rabbits)
  • Article
  • Open Access
14 Citations
4,559 Views
16 Pages

9 September 2022

Phalaenopsis orchids are popular worldwide due to their high ornamental and economic value; the spike and inflorescence formation of their flowers could be efficiently controlled under proper conditions. In this study, transcriptomic profiles and end...

(This article belongs to the Special Issue From Functional Genomics to Biotechnology in Ornamental Plant)
  • Article
  • Open Access
6 Citations
2,975 Views
19 Pages

Relative Availability of Nitrogen and Calcium Regulates the Growth of Poplar Seedlings Due to Transcriptome Changes

  • Xiaohang Weng,
  • Hui Li,
  • Yongbin Zhou,
  • Chengshuai Ren and ,
  • Songzhu Zhang and
  • Liying Liu
  • + 1 author+ 0 author

18 September 2023

The concentrations of exogenous nitrogen and calcium can significantly regulate plant growth and photosynthesis and mutually affect their absorption and utilization. However, whether there is an optimal nitrogen–calcium ratio (N:Ca ratio) in po...

(This article belongs to the Section Genetics and Molecular Biology)
  • Article
  • Open Access
6 Citations
3,402 Views
13 Pages

Folic Acid Induces Intake-Related Changes in the Mammary Tissue Transcriptome of C57BL/6 Mice

  • Mark A. Burton,
  • Elie Antoun,
  • Reyna S. Penailillo,
  • Graham C. Burdge and
  • Karen A. Lillycrop

15 September 2020

Folic acid (FA) intake has been associated with increased breast cancer risk in some studies. Although underlying mechanisms are unknown, epigenetic modifications that persistently alter transcription have been suggested. We tested the hypothesis tha...

(This article belongs to the Section Micronutrients and Human Health)
  • Article
  • Open Access
10 Citations
3,205 Views
14 Pages

Transcriptome Characterization and Gene Changes Induced by Fusarium solani in Sweetpotato Roots

  • Chengling Zhang,
  • Qinchuan Luo,
  • Wei Tang,
  • Jukui Ma and ,
  • Dongjing Yang,
  • Jingwei Chen,
  • Fangyuan Gao,
  • Houjun Sun and
  • Yiping Xie
  • + 4 authors+ 0 author

25 April 2023

Sweetpotato (Ipomoea batatas) is an important root crop that is infected by Fusarium solani in both seedling and root stages, causing irregular black or brown disease spots and root rot and canker. This study aims to use RNA sequencing technology to...

(This article belongs to the Special Issue Sweet Potato Genetics and Genomics)
  • Article
  • Open Access
1,086 Views
20 Pages

Genome and Comparative Transcriptome Analysis of Growth and Developmental Changes in the Pileus of the Cyclocybe chaxingu

  • Liyuan Luo,
  • Shiqi Wan,
  • Yuling Zhou,
  • Chezhao Wang and ,
  • Chunyan Yang,
  • Wenqi Huang,
  • Ling Chen,
  • Zhiting Yu,
  • Sihan Li and
  • Xinrui Liu
  • + 6 authors+ 1 author

13 January 2026

Cyclocybe chaxingu is a well-known edible fungus in China, in which pileus size and color are key traits determining its commercial value. However, the molecular genetic mechanisms underlying the morphological development of its pileus remains limite...

(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
  • Article
  • Open Access
3 Citations
2,544 Views
17 Pages

BIO 300 Attenuates Whole Blood Transcriptome Changes in Mice Exposed to Total-Body Radiation

  • Artur A. Serebrenik,
  • Oluseyi O. Fatanmi,
  • Stephen Y. Wise,
  • Sarah A. Petrus and ,
  • Michael D. Kaytor and
  • Vijay K. Singh
  • + 1 author+ 0 author

13 August 2024

Development of radiation medical countermeasures under the U.S. Food and Drug Administration Animal Rule requires the capability to translate an effective animal-to-human drug dose. One method of human dose translation is using a biomarker and determ...

(This article belongs to the Collection Feature Papers Collection in Biochemistry)
  • Article
  • Open Access
5 Citations
3,874 Views
24 Pages

Unraveling Transcriptome Profile, Epigenetic Dynamics, and Morphological Changes in Psoriasis-like Keratinocytes: “Insights into Similarity with Psoriatic Lesional Epidermis”

  • Ameneh Ghaffarinia,
  • Szilárd Póliska,
  • Ferhan Ayaydin,
  • Aniko Goblos and ,
  • Shahram Parvaneh,
  • Máté Manczinger,
  • Fanni Balogh,
  • Lilla Erdei,
  • Zoltán Veréb and
  • Lajos Kemény
  • + 7 authors+ 2 authors

12 December 2023

Keratinocytes are one of the primary cells affected by psoriasis inflammation. Our study aimed to delve deeper into their morphology, transcriptome, and epigenome changes in response to psoriasis-like inflammation. We created a novel cytokine mixture...

(This article belongs to the Special Issue Roles of Cytokines in Skin Inflammation)
  • Article
  • Open Access
10 Citations
5,171 Views
17 Pages

25 December 2020

Pseudomonas putida’s versatility and metabolic flexibility make it an ideal biotechnological platform for producing valuable chemicals, such as medium-chain-length polyhydroxyalkanoates (mcl-PHAs), which are considered the next generation biopl...

(This article belongs to the Section Molecular Microbiology)
  • Article
  • Open Access
8 Citations
3,377 Views
17 Pages

Changes in the Histology of Walnut (Juglans regia L.) Infected with Phomopsis capsici and Transcriptome and Metabolome Analysis

  • Leming Zhou,
  • Tianhui Zhu,
  • Shan Han,
  • Shujiang Li and ,
  • Yinggao Liu,
  • Tiantian Lin and
  • Tianmin Qiao
  • + 2 authors+ 0 author

Phomopsis capsici (P. capsici) causes branch blight of walnuts, which leads to significant economic loss. The molecular mechanism behind the response of walnuts remains unknown. Paraffin sectioning and transcriptome and metabolome analyses were perfo...

(This article belongs to the Special Issue Power Up Plant Genetic Research with Genomic Data)
  • Article
  • Open Access
10 Citations
4,717 Views
22 Pages

Redox and Hormonal Changes in the Transcriptome of Grape (Vitis vinifera) Berries during Natural Noble Rot Development

  • Miklós Pogány,
  • Tamás Dankó,
  • Júlia Hegyi-Kaló,
  • Evelin Kámán-Tóth and ,
  • Dorottya Réka Szám,
  • Kamirán Áron Hamow,
  • Balázs Kalapos,
  • Levente Kiss,
  • József Fodor and
  • Balázs Barna
  • + 7 authors+ 2 authors

24 March 2022

Noble rot is a favorable form of the interaction between grape (Vitis spp.) berries and the phytopathogenic fungus Botrytis cinerea. The transcriptome pattern of grapevine cells subject to natural noble rot development in the historic Hungarian Tokaj...

(This article belongs to the Section Plant Protection and Biotic Interactions)
  • Article
  • Open Access
28 Citations
6,942 Views
14 Pages

Comparative Transcriptome Analysis Provides Novel Insight into Morphologic and Metabolic Changes in the Fat Body during Silkworm Metamorphosis

  • Jian Peng,
  • Zheng Li,
  • Yan Yang,
  • Peng Wang and ,
  • Xuan Zhou,
  • Tujing Zhao,
  • Mengpei Guo,
  • Meng Meng,
  • Tianlei Zhang and
  • Ping Zhao
  • + 8 authors+ 3 authors

9 November 2018

The fat body plays key roles in energy storage and utilization as well as biosynthetic and metabolic activities in insects. During metamorphosis from larva to pupa, the fat body undergoes dramatic changes in morphology and metabolic processes. Howeve...

(This article belongs to the Section Biochemistry)
  • Article
  • Open Access
7 Citations
2,573 Views
13 Pages

22 September 2023

Drought has become a serious environmental factor that affects the growth and yield of plants. Fructan, as an important storage compound in garlic, plays an important role in drought tolerance. Genomic changes in plants under drought stress clarify t...

(This article belongs to the Special Issue Plant Metabolic Responses to Biotic and Abiotic Stress)
  • Article
  • Open Access
1 Citations
2,344 Views
17 Pages

BCG Vaccination Potentially Modulates the Transcriptome of Infant CD4 T Cells in Addition to Age-Dependent Immune Ontogeny-Associated Changes

  • Vidya Vijayan Karuvan Kandiyil,
  • Eunchong Kang,
  • Emily Coates,
  • Portia Kamthunzi and ,
  • Gerald Tegha,
  • Mina Hosseinipour,
  • Di Wu,
  • Fei Zou and
  • Kristina De Paris
  • + 4 authors+ 0 author

29 June 2025

Background: The Bacille Calmette–Guérin (BCG) vaccine is part of the Extended Programme on Immunization (EPI) and as such is generally administered at birth. The global introduction of BCG not only protected many vaccinated infants again...

(This article belongs to the Section Vaccine Design, Development, and Delivery)
  • Article
  • Open Access
3 Citations
2,836 Views
14 Pages

Comparative Transcriptome Analysis Reveals Changes in Gene Expression Associated with Anthocyanin Metabolism in Begonia semperflorens under Light Conditions

  • Kunkun Zhao,
  • Airong Liu,
  • Yuanbing Zhang,
  • Weixin Liu and ,
  • Zhimin Zhao and
  • Shuyue Yang
  • + 1 author+ 0 author

Anthocyanins, recognized as stress indicators, particularly under high-light conditions, play a pivotal role in plant stress responses. The advent of transcriptomics has opened avenues to elucidate the mechanisms underlying high light-induced anthocy...

(This article belongs to the Special Issue Innovation in Propagation and Cultivation of Ornamental Plants)
  • Article
  • Open Access
5 Citations
3,693 Views
18 Pages

Childhood Obesity-Related Mechanisms: MicroRNome and Transcriptome Changes in a Nested Case-Control Study

  • Jin Hee Kim,
  • Da Hae Kim,
  • Youn-Hee Lim,
  • Choong Ho Shin and ,
  • Young Ah Lee,
  • Bung-Nyun Kim,
  • Johanna Inhyang Kim and
  • Yun-Chul Hong
  • + 3 authors+ 0 author

Childhood obesity could contribute to adulthood obesity, leading to adverse health outcomes in adults. However, the mechanisms for how obesity is developed are still unclear. To determine the epigenome-wide and genome-wide expression changes related...

(This article belongs to the Special Issue MicroRNAs, tRNA Fragments, and Circular RNAs: Pivotal Regulators of Gene Expression and Their Roles in Human Diseases)
  • Article
  • Open Access
14 Citations
5,627 Views
24 Pages

Comparative Transcriptome Analysis Unveils the Molecular Mechanism Underlying Sepal Colour Changes under Acidic pH Substratum in Hydrangea macrophylla

  • Razieh Rahmati,
  • Rasmieh Hamid,
  • Zahra Ghorbanzadeh,
  • Feba Jacob and ,
  • Pezhman Azadi,
  • Mehrshad Zeinalabedini,
  • Laleh Karimi Farsad,
  • Mehrbano Kazemi,
  • Mohammad Ali Ebrahimi and
  • Mohammad Reza Hajirezaei
  • + 8 authors+ 3 authors

6 December 2022

The hydrangea (Hydrangea macrophylla (Thunb). Ser.), an ornamental plant, has good marketing potential and is known for its capacity to change the colour of its inflorescence depending on the pH of the cultivation media. The molecular mechanisms caus...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
9 Citations
3,229 Views
15 Pages

9 August 2022

Plants repair their mechanical wounds by reprogramming secondary metabolism. However, which genes are reprogrammed during this repair process in Aquilaria sinensis has rarely been studied. Here, we used high-throughput RNA sequencing to explore the c...

(This article belongs to the Special Issue Functional Genomics of Forest Trees)
  • Article
  • Open Access
21 Citations
4,924 Views
20 Pages

Transcriptome and Metabolome Analysis of Color Changes during Fruit Development of Pepper (Capsicum baccatum)

  • Yu Zhang,
  • Huangying Shu,
  • Muhammad Ali Mumtaz,
  • Yuanyuan Hao and ,
  • Lin Li,
  • Yongjie He,
  • Weiheng Jin,
  • Caichao Li,
  • Yan Zhou and
  • Zhiwei Wang
  • + 7 authors+ 2 authors

19 October 2022

Fruit color is one of the most critical characteristics of pepper. In this study, pepper (Capsicum baccatum L.) fruits with four trans-coloring periods were used as experimental materials to explore the color conversion mechanism of pepper fruit. By...

(This article belongs to the Special Issue New Horizons in Vegetable Genetics and Genetic Breeding)
  • Article
  • Open Access
1 Citations
2,089 Views
16 Pages

17 April 2024

Osmanthus fragrans, belonging to the family Oleaceae, is listed as one of the most important traditional ornamental plant species in China. A new cultivar O. fragrans ‘Wucaigui’ has a very diversified form in terms of leaf colors, in whic...

(This article belongs to the Section Genetics and Molecular Biology)
  • Article
  • Open Access
5 Citations
3,487 Views
27 Pages

Transcriptome Changes in Glioma Cells upon Infection with the Oncolytic Virus VV-GMCSF-Lact

  • Dmitriy V. Semenov,
  • Natalia S. Vasileva,
  • Maya A. Dymova,
  • Sergey V. Mishinov and ,
  • Yulya I. Savinovskaya,
  • Alisa B. Ageenko,
  • Anton S. Dome,
  • Nikita D. Zinchenko,
  • Grigory A. Stepanov and
  • Elena V. Kuligina
  • + 7 authors+ 2 authors

12 November 2023

Oncolytic virotherapy is a rapidly evolving approach that aims to selectively kill cancer cells. We designed a promising recombinant vaccinia virus, VV-GMCSF-Lact, for the treatment of solid tumors, including glioma. We assessed how VV-GMCSF-Lact aff...

  • Article
  • Open Access
1 Citations
983 Views
26 Pages

Identification of Changes in the Transcriptome Profile of Human Hepatoma HepG2 Cells Exposed to Combined Sorafenib and Cannabis Treatment

  • Krittakarn Udomkritayachai,
  • Theeraphat Thiamsuk,
  • Takdanai Jarujamrat,
  • Panaphas Kudikhong and ,
  • Sira Raksakhom,
  • Phitsamai Suphattana,
  • Natthanan Khankham,
  • Palapoom Thanawong and
  • Supakit Khacha-ananda
  • + 4 authors+ 0 author

Cannabis-derived compounds are increasingly used as adjuncts in cancer therapy due to their reported antiproliferative and pro-apoptotic effects. However, potential drug–herb interactions with standard anticancer agents—namely sorafenib&m...

(This article belongs to the Section Bioactives and Nutraceuticals)
  • Article
  • Open Access
3 Citations
3,788 Views
12 Pages

9 August 2022

The autosomal dominant inherited spinocerebellar ataxias (SCAs) are a group of neurodegenerative disorders characterized by cerebellar atrophy and loss of Purkinje neurons. Spinocerebellar ataxia type 14 (SCA14) is a rare variant of SCAs caused by mi...

(This article belongs to the Special Issue Advances of Brain Transcriptomics)
  • Article
  • Open Access
14 Citations
4,110 Views
24 Pages

Genome-Wide DNA Methylation and Transcriptome Integration Associates DNA Methylation Changes with Bovine Subclinical Mastitis Caused by Staphylococcus chromogenes

  • Mengqi Wang,
  • Nathalie Bissonnette,
  • Mario Laterrière,
  • David Gagné and ,
  • Pier-Luc Dudemaine,
  • Jean-Philippe Roy,
  • Marc-André Sirard and
  • Eveline M. Ibeagha-Awemu
  • + 3 authors+ 0 author

Staphylococcus chromogenes (SC) is a common coagulase-negative staphylococcus described as an emerging mastitis pathogen and commonly found in dairy farms. This study investigated the potential involvement of DNA methylation in subclinical mastitis c...

(This article belongs to the Special Issue Animal Genomes and Epigenomes)
  • Article
  • Open Access
12 Citations
4,718 Views
10 Pages

A Spatial Transcriptome Reveals Changes in Tumor and Tumor Microenvironment in Oral Cancer with Acquired Resistance to Immunotherapy

  • Yoh-ichiro Iwasa,
  • Tomoyuki Nakajima,
  • Kentaro Hori,
  • Yoh Yokota and ,
  • Ryosuke Kitoh,
  • Takeshi Uehara and
  • Yutaka Takumi
  • + 2 authors+ 0 author

22 November 2023

Although anti-programmed death-1 (PD-1) antibody therapy improves the prognosis in patients with head and neck squamous cell carcinoma (HNSCC), some patients exhibit disease progression even after showing a good response to the treatment initially be...

(This article belongs to the Special Issue Cancer Immunotherapy and the PD-1/PD-L1 Checkpoint Pathway)
  • Article
  • Open Access
11 Citations
4,391 Views
12 Pages

6 September 2022

Yarrowia lipolytica is an oleaginous yeast for the production of oleochemicals and biofuels. Nitrogen deficiency is beneficial to lipids biosynthesis in Y. lipolytica. Target of rapamycin (TOR) regulates the utilization of nutrients, which is inhibit...

(This article belongs to the Special Issue Fungal Applications in Bioenergy, Bioremediation, Biomedicine, Biocontrol, and Biomaterials)
  • Article
  • Open Access
24 Citations
4,729 Views
21 Pages

Transcriptome Analysis Reveals Key Gene Expression Changes in Blue Catfish Sperm in Response to Cryopreservation

  • Haolong Wang,
  • Helen R. Montague,
  • Hana N. Hess,
  • Ying Zhang and ,
  • Gavin L. Aguilar,
  • Rex A. Dunham,
  • Ian A. E. Butts and
  • Xu Wang
  • + 3 authors+ 0 author

The hybrids of female channel catfish (Ictalurus punctatus) and male blue catfish (I. furcatus) account for >50% of US catfish production due to superior growth, feed conversion, and disease resistance compared to both parental species. However, t...

(This article belongs to the Section Molecular Biology)
  • Article
  • Open Access
2 Citations
1,709 Views
18 Pages

Identification of Key Genes Controlling Flavor Changes During Jujube Fruit Development by Integrating Transcriptome and Metabolome Analysis

  • Xin Zhang,
  • Xurui Wen,
  • Wendi Xu,
  • Yufeng Ren and ,
  • Tianjun Wei,
  • Hui Li,
  • Jun Zhou and
  • Zhanlin Bei
  • + 3 authors+ 0 author

29 May 2025

To elucidate the molecular mechanisms that underlie jujube (Ziziphus jujuba) flavor synthesis, we integrated transcriptomic and metabolomic analyses on the ‘Lingwuchangzao’ cultivar across seven developmental stages. Our multi-omics appro...

(This article belongs to the Topic Advances in Industrial Crops Physioecology and Sustainable Cultivation)
  • Article
  • Open Access
3 Citations
2,558 Views
17 Pages

Transcriptome Changes of Hematopoietic Stem and Progenitor Cells in the Peripheral Blood of COVID-19 Patients by scRNA-seq

  • Jinfu Zhang,
  • Xin Shu,
  • Rong Deng,
  • Zihao Yang and ,
  • Manling Shu,
  • Xiangying Ou,
  • Xuan Zhang,
  • Zhenyu Wu,
  • Huihong Zeng and
  • Lijian Shao
  • + 5 authors+ 0 author

Coronavirus disease 2019 (COVID-19) threatens public health all over the world. It is well-accepted that the immune cells in peripheral blood are widely involved in the pathological process of COVID-19. However, hematopoietic stem and progenitor cell...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
8 Citations
4,714 Views
33 Pages

Changes in Biceps femoris Transcriptome along Growth in Iberian Pigs Fed Different Energy Sources and Comparative Analysis with Duroc Breed

  • Rita Benítez,
  • Yolanda Núñez,
  • Miriam Ayuso,
  • Beatriz Isabel and ,
  • Miguel A. Fernández-Barroso,
  • Eduardo De Mercado,
  • Emilio Gómez-Izquierdo,
  • Juan M. García-Casco,
  • Clemente López-Bote and
  • Cristina Óvilo
  • + 5 authors+ 0 author

8 December 2021

This experiment was conducted to investigate the effects of developmental stage, breed, and diet energy source on the genome-wide expression, meat quality traits, and tissue composition of biceps femoris muscle in growing pure Iberian and Duroc pigs....

(This article belongs to the Special Issue Transcriptomics in Autochthonous Breeds or Populations of Livestock and Aquaculture Species)
  • Article
  • Open Access
7 Citations
3,676 Views
20 Pages

Age and Sex-Related Changes in Human First-Trimester Placenta Transcriptome and Insights into Adaptative Responses to Increased Oxygen

  • Fulin Liu,
  • Christelle Simasotchi,
  • Françoise Vibert,
  • Wencan Zhu and ,
  • Sophie Gil,
  • Séverine A. Degrelle and
  • Thierry Fournier
  • + 2 authors+ 0 author

Physiological oxygen tension rises dramatically in the placenta between 8 and 14 weeks of gestation. Abnormalities in this period can lead to gestational diseases, whose underlying mechanisms remain unclear. We explored the changes at mRNA level by c...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
11 Citations
5,022 Views
26 Pages

Transcriptome Changes in Three Brain Regions during Chronic Lithium Administration in the Rat Models of Mania and Depression

  • Dawid Szczepankiewicz,
  • Piotr Celichowski,
  • Paweł A. Kołodziejski,
  • Ewa Pruszyńska-Oszmałek and ,
  • Maciej Sassek,
  • Przemysław Zakowicz,
  • Ewa Banach,
  • Wojciech Langwiński,
  • Kosma Sakrajda and
  • Aleksandra Szczepankiewicz
  • + 12 authors+ 7 authors

24 January 2021

Lithium has been the most important mood stabilizer used for the treatment of bipolar disorder and prophylaxis of manic and depressive episodes. Despite long use in clinical practice, the exact molecular mechanisms of lithium are still not well ident...

(This article belongs to the Special Issue Molecular Mechanisms of Mood Stabilizers)
  • Article
  • Open Access
11 Citations
9,043 Views
15 Pages

4 February 2022

The porcine estrous cycle is influenced by reproductive hormones, which affect porcine reproduction and result in physiological changes in the reproductive organs. The ovary is involved in ovulation, luteinization, corpus luteum development, and lute...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
14 Citations
4,449 Views
13 Pages

Transcriptome Analysis Reveals the Gene Expression Changes in the Silkworm (Bombyx mori) in Response to Hydrogen Sulfide Exposure

  • Rui Zhang,
  • Yu-Yao Cao,
  • Juan Du,
  • Kiran Thakur and ,
  • Shun-Ming Tang,
  • Fei Hu and
  • Zhao-Jun Wei
  • + 2 authors+ 0 author

13 December 2021

Hydrogen sulfide (H2S) has been recognized for its beneficial influence on physiological alterations. The development (body weight) and economic characteristics (cocoon weight, cocoon shell ratio, and cocoon shell weight) of silkworms were increased...

(This article belongs to the Special Issue Silkworm and Silk: Traditional and Innovative Applications)
  • Article
  • Open Access
2 Citations
2,848 Views
25 Pages

1 August 2024

Lyme disease, caused by infection with members of the Lyme borreliosis group of Borrelia spirochete bacteria, is increasing in frequency and distribution worldwide. Epigenetic interactions between the mammalian host, tick, and bacterial pathogen are...

(This article belongs to the Section Microbial Genetics and Genomics)

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