Fishes

We investigated reproductive behavior and sexual patterns in two odacid fish—Rainbow cale Heteroscarus acroptilus and Herring cale Olisthops cyanomelas—inhabiting temperate reefs in Australia on the basis of underwater observations and histological studies. The males of both species established a territory and continuously courted females they encountered in the territory. The males and females went up in the water column to release gametes in pairs. We found ovarian cavities in the gonadal tissue of H. acroptilus males, suggesting that protogynous sex change occurred in this species. Dichromatism is reported in O. cyanomelas, with males having a dark blue body color while females have a brown body color; however, we found small mature males also included among brown individuals. Furthermore, we diagnosed O. cyanomelas with gonochorism, which is rare in closely related labrids. We compared the similarities and differences in reproductive behavior and sexual patterns between the two species and with labrids. Full article

Candy darter Etheostoma osburni, a federally endangered non-game fish, has been extirpated from most of its historic range in Virginia and now occurs in four isolated populations in the New River drainage. Understanding of population genetic structure will provide insights into the recent natural history of the species and can inform conservation management. Our objectives were to: characterize population genetic structure, estimate and compare effective population sizes (N_e), and use this information to infer recent population history. Variation at mitochondrial cytochrome b sequences among 150 individuals showed 10 haplotypes separated by 1–14 mutational steps, some shared and some unique to particular populations. Variation at 12 microsatellite loci among 171 individuals showed lower variation in Dismal Creek than in other populations. All populations showed evidence of having experienced a genetic bottleneck and were highly differentiated from one another based on both types of DNA markers. Population genetic structure was related to stream position in regard to the New River, suggesting that populations were once connected. N_e estimates for all populations were less than the 500 recommended to maintain evolutionary potential, but most estimates were greater than the 100 needed for use as source populations. Our findings indicate that habitat management to allow expansion of populations, and translocations to exchange genetic material among populations, may be effective tactics to promote conservation of candy darter in Virginia. Full article

In light of the ongoing depletion of global fishery resources, there has been a growing trend towards increasing the scope of stock enhancement activities. The objective of these efforts is to replenish the diminishing fishery resources and restore the ecological balance within marine biological communities. Nevertheless, the efficacy of the stock enhancement project has been hindered by the differential growth and environmental adaptability of released species, which can be attributed to the influence of abundant food resources. As a consequence, the project has not yielded the anticipated outcomes. One useful strategy for enhancing the efficacy of stock enhancement is the deliberate allocation of appropriate habitats for diverse released organisms. Fatty acids were extracted by the Folch method and the composition and content of muscle fatty acids were determined by gas chromatography mass spectrometry. This study examines the fatty acid composition of four commercially important species, namely, little yellow croaker (Larimichthys polyactis), red sea bream (Pagrus major), swimming crab (Portunus trituberculatus), and ridgetail white prawn (Exopalaemon carinicauda). The sum of available docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) is employed as an indicator to assess the appropriateness of the marine environment for releasing these species (DE). The red sea bream exhibited the lowest DE value of 13.69% in the northern coastal water of the Bohai Sea, and the little yellow croaker displayed the lowest DE value of 10.91% in the southern coastal water of the Shandong Peninsula. Conversely, the DE values of other seas were comparable, averaging 20.16%. The range of the DE value of the swimming crab across various coastal waters was observed to be between 33.59% and 45.21%. The ridgetail white prawn had a DE value of 21.10% in the coastal water of Yancheng City, Jiangsu Province, as well as the southern coastal water of the Shandong Peninsula, and a DE value of 31.75% in the southern and central coastal waters of Zhejiang Province. The findings of the study indicate that the Bohai Sea and the northern region of the Yellow Sea are the appropriate stock enhancement areas for red sea bream. Similarly, the Yellow Sea and the northern part of the East China Sea are identified as suitable habitats for the little yellow croaker. The swimming crab, on the other hand, is adapted to be released in the Yellow Sea, the Bohai Sea, and the East China Sea. The north of the central part of the East China Sea is an appropriate release area for the ridgetail white prawn. Full article

The snail Bellamya purificata is recognized as a potential bio-remediation species, and is commonly employed in polyculture to enhance resource utilization efficiency and realize culture environment regulation. In order to enrich the microbiome studies on elucidating the ecological effects of snail B. purificata farming, we assessed the effect of B. purificata farming activities, at varying stocking densities, on the algal and fungal communities in sediment. Four experimental groups were established in our study, each corresponding to a different stocking density: 0, 234.38, 468.75, and 937.5 g/m², represented as CON, LD, MD, and HD, respectively. High-throughput sequencing based on ITS and 23S ribosomal RNA (rRNA) genes was employed to analyze the variations in algal and fungal communities under B. purificata farming activities at different stocking densities. B. purificata farming activities had no significant effect on the alpha diversities of fungal and algal communities, but significantly altered the compositions of fungal and algal communities in sediments, especially B. purificata farming activity at low stocking density. B. purificata farming activities at low stocking density could significantly increase the relative abundances of fungal genera Paraconiothyrium and Penicillium compared with the CON group. The promoting effect diminished with increasing density. B. purificata farming activities at low or medium stocking density also could enhance the relative abundances of algal genera Microchloropsis, Scenedesmus, and Auxenochlorella. Hence, B. purificata farming activity at low stocking density might be the optimum density to enhance resource utilization efficiency and minimize environmental pollution. Full article

Artemia (brine shrimp) holds significant value as a live feed for larval fish and crustaceans, owing to their distinctive dietary requirements. However, it is vital to acknowledge that Artemia also carries potential risk as a vector of infection. We conducted a metagenomic analysis to explore the virome present in Artemia cysts collected from inland salt lakes across four distinct regions in Kazakhstan. This study identified the presence of dsDNA phages and RNA virus sequences, with a predominant representation from the Reoviridae, Nodaviridae, Dicistroviridae, Picornaviridae, Astroviridae, Tombusviridae, and Solemoviridae families. In general, this study has significantly enhanced our understanding of the virome of Artemia cysts in the saline lakes of Kazakhstan; however, the interactions between these putative viruses and brine shrimp and other aquatic animals need further research. Full article

The interaction between climate warming and alien fish invasions could have severe consequences in inland waters, which represent isolated environments with high biodiversity richness. Due to the current climatic trend, increasing water temperatures and salinization, shorter ice cover period, and altered flow regimes are predicted for these environments. The aim of this review is to offer a comprehensive analysis at a global scale of the recent studies available in the literature, focused on the responses of invasive freshwater fish to the effects of climate change in both lotic and lentic environments. To achieve this purpose, we selected 34 relevant papers, using the Scopus and Google Scholar database. New alien species establishment, distribution range expansion of species already introduced, and exacerbating impacts on freshwater ecosystems and the native fish communities they host were included in the topics covered by the analyzed papers. Despite the uncertainties related to the unpredictability with which the effects of global warming will occur, the findings of the selected studies served as a support to evaluate conservation and management implications, with particular reference to possible mitigation strategies. Full article

Understanding the relationship between environmental temperature and the biological traits of organisms is fundamental to inferring the potential impacts of climate change. In the case of marine poikilotherm species, seawater temperature is one of the main driving forces of biological processes, with consequences at higher levels of organization such as population and ecosystem. In this study, we analysed differences in maximum carapace width (CWmax), size at maturation, relative size at maturation, and duration of the reproductive season for the green crab (Carcinus maenas) along a temperature gradient. An extensive review of bibliographic data was performed on studies published between 1962 and 2020, gathering C. maenas data from 55 different populations, spread over 20 degrees of latitude and 14.2 °C of sea surface temperature (SST). In addition, green crab data were collected at five different lagoons and estuaries along the continental Portuguese coast. The relationship between average SST and CWmax, age of maturation, reduction of size at maturation, and duration of egg bearing was analysed to understand the role of SST in driving variation in these C. maenas characteristics across a latitudinal gradient. There was a significant relationship between SST and CWmax for males and SST and CW of females at maturation, respectively. The results extrapolate for each local projected temperature increase caused by climate change and suggest an effect on the morphometric and reproductive traits of C. maenas across regions. These changes comprise an overall reduction in C. maenas body size, an enlargement of the reproductive season, a shortening in the duration of larval developmental time, and a decrease in the relative size of crabs at maturation. Secondary consequences on the fecundity and connectivity of populations are discussed. Full article

The razor clam Sinonovacula constricta is the first marine mollusk demonstrated to possess the complete long-chain polyunsaturated fatty acids (LC-PUFA) biosynthetic pathway. This study explored the impact of different microalgae on growth, Fad and Elovl expressions, and fatty acid (FA) profiles in juvenile S. constricta. Results revealed that juveniles fed with Isochrysis galbana (rich in DHA) or Chaetoceros calcitrans (rich in EPA) consistently exhibited higher growth than those fed Chlorella sp. (rich in LA and ALA), underscoring the importance of dietary LC-PUFA in S. constricta’s development. Expression of most Fad and Elovl in C. calcitrans and I. galbana-fed juveniles were initially up-regulated, then down-regulated, suggesting LC-PUFA demand for faster growth. Although Chlorella sp.-fed juveniles exhibited decreased mRNA levels for most genes, levels were notably higher lately compared to those fed C. calcitrans or I. galbana, hinting at potential LC-PUFA biosynthesis induction. FA profiles in S. constricta generally mirrored those in ingested microalgae, implying direct FA accumulation from diets. Some microalgal FA were absent in farmed S. constricta, while others emerged, indicating S. constricta’s ability to selectively accumulate and synthesize FA. This study enhances the understanding of dietary FA metabolism in S. constricta, valuable for selecting appropriate microalgae in its farming practices. Full article

The Japanese eel (Anguilla japonica) is the most prevalent freshwater eel species in Taiwan. However, its population has undergone a significant decline in recent decades due to factors such as overfishing, habitat destruction, and the effects of climate change. Urgent action is needed to conserve this species. Before implementing conservation measures, it is imperative to ascertain the distribution of Japanese eels in Taiwan’s rivers. This study’s primary objective was to assess the effectiveness of eDNA analysis as a method for detecting Japanese eels. To achieve this goal, we compared eDNA analysis data with results obtained from electrofishing, with the Fengshan and Shimen Rivers serving as our designated test sites. Additionally, we collected water samples from 34 other rivers across Taiwan to comprehensively assess the species’ wider distribution using eDNA analysis. Our findings demonstrated eDNA analysis’s viability for detecting Japanese eels. Of the 36 rivers tested, Japanese eel DNA was detected in samples from 21 rivers, scattered across northern, eastern, southern, and western Taiwan, with no specific concentration in any region. We also noted reduced detectability of Japanese eel DNA in highly polluted rivers, indicating that river pollution may have a potential impact on their population. In the future, expanding eDNA analysis to more rivers could identify additional rivers that Japanese eels inhabit. Subsequently, resource management and conservation efforts can be focused on these identified habitats. Furthermore, developing advanced eDNA-based methods for estimating the abundance or biomass of Japanese eels could enhance the flexibility of management and conservation measures. Full article

Jade perch (Scortum barcoo) has an XX/XY sex-determination system (SDS); however, its sex chromosomes and sex-determining region remain unknown. The recent availability of the jade perch chromosome-level genomic data provides a valuable resource for pinpointing the location of functional genes and the whole genomic structure. In this study, we conducted. In silico chromosome mapping of male-specific/linked loci of jade perch and identified a potential 11.18 Mb male-linked region localized on chromosome 19 (SBA19). Repeat annotations of the male-linked region revealed an abundance of transposable elements, particularly Ty3/Gypsy and novel repeats. Sequence analysis of this region identified a remnant of amh gene, which is considered a potential candidate for SDS in many teleosts. A duplicate copy of amh remnant was located at SBA6. These duplicated amh copies were highly similar to those of XX/XY SDS in teleosts, in which one copy of amh was identified on the Y sex chromosome. Taken all together, we hypothesize SBA19 as the putative sex chromosome and the 11.18 Mb male-linked region to be a potential male-determining region. Full article

Climate change is expected to affect freshwater water bodies worldwide, especially those located in semiarid and arid regions, including the Arabian Peninsula. Species distribution modeling has been widely used to predict the effects of climate changes on aquatic species. Occurrence records of the cichlid fish Nile tilapia, Oreochromis niloticus, were geographically mapped, followed by the implementation of species distribution models to delineate its range within the sensitive inland water system of the southeastern Arabian Peninsula. The analysis encompassed the examination of species presence data in the context of environmental variables, leading to the development of an ensemble model for habitat suitability, combining four distinct species distribution models. The findings indicated that the mean diurnal range and precipitation seasonality emerged as the most influential factors in predicting the suitability of habitats for O. niloticus. The response curve analysis indicated that the presence probability of O. niloticus decreased with increasing mean diurnal range and decreasing precipitation seasonality. The suitable distribution ranges for O. niloticus in the studied area were mainly distributed in the northeast of this region, where native/endemic fish diversity is high. The ensemble model results specified a significant impact of climate change on O. niloticus distribution, so highly suitable areas for this species will be reduced, while areas with low to moderate suitability increase slightly or remain unchanged. While O. niloticus is anticipated to display resilience and prosper under the influence of climate change, it remains paradoxical that its habitats are at risk of being compromised by climate-induced alterations. Consequently, even this resilient species stands susceptible to the repercussions of climate change. Due to the worldwide severe impacts of Nile tilapia, regular monitoring of freshwater ecosystems and fish fauna—especially in the northeast of the Arabian Peninsula, which has currently been invaded by this alien species—and protecting the region from key anthropogenic stressors are recommended to successfully conserve the freshwater fishes, which include about 22 recognized fish species in 16 genera, 10 families, 7 orders, and a class including 20 natives (7 endemic) species, out of which 13 species co-occur in sympatricity with O. niloticus. Full article

Cryopreservation and transplantation of spermatogonial stem cells (SSCs) offer new possibilities in the conservation of valuable genetic resources. Therefore, the present study developed a cryopreservation method for whole testicular tissue and for spermatogonial stem cells of jundia catfish (Rhamdia quelen) and developed an enriched germ cell transplantation of jundia catfish into depleted common carp (Cyprinus carpio) testes. Our findings from whole testes indicate that the cryoprotectants MeOH (1.3 M), DMSO (1.4 M), and EG (1.4 M) resulted in high cell viability rates of 67%, 62%, and 51.5%, respectively. Notably, in the case of enriched post-thaw SSCs, DMSO exhibited the highest cell viability at 27%, followed by EG at 16% and MeOH at 7%. Additionally, we observed the successful colonization and proliferation of jundia germ cells within the recipient gonads of common carp following transplantation. Notably, Sertoli cells were identified in the recipient gonads, providing support to the stained donor germ cells and indicated the formation of cysts. Our data suggest that cryopreserving entire testicular tissue presents a viable alternative to cryopreserving isolated testicular cells, and the spermatogonial cells isolated from testes of jundia retained transplantability characteristics. Nonetheless, more investigations are required to reach the goal of functional gamete and to assess the effectiveness of transplantation using these cryopreserved tissues. Taken together, proper cryopreservation methodology and transplantation technology could aid the preservation practice of fish genetic resources. Full article

In this study, we developed a novel method for the detection of Vibrio alginolyticus, utilizing the specific recognition of an aptamer for V. alginolyticus and signal amplification via hybridization chain reaction (HCR) and horseradish-peroxidase-conjugated streptavidin. The proposed HCR-based multivalent aptamer (multi-Apt) amplifier allows for sensitive detection of V. alginolyticus in a linear range from 10 to 10⁷ CFU/mL. The linear equation is y = 747.5x + 126.2, R² = 0.986, and the limit of detection (LOD) is 3 CFU/mL. Seawater and freshwater samples were utilized in the spike recovery experiment, yieldng a recovery rates ranging from 94.3% to 108.8%. The relative standard deviation (RSD) for all samples is below 6.73%. Taken together, the proposed method has great potential for application in monitoring of V. alginolyticus in aquaculture environments. Full article

This study investigated the leap characteristics of rainbow trout (also known as steelhead) (Oncorhynchus mykiss) present in the Laurentian Great Lakes. To aid in the collection and annotation of leaps, a custom web application was developed and through the labeling of key markers, the launch speed, launch angle, and length of the fish were calculated. Data collection took place during migratory runs in the spring of 2022 and 2023 that resulted in 173 total leaps annotated with mean launch angles of 58.73 and 68.2 degrees, in 2022 and 2023, respectively. The mean launch speed normalized by body length was consistent across years at 8.6 body lengths per second. The integration of leaping data with computational fluid dynamics simulations revealed steelhead launch angle aligns closely with the water velocity direction as the velocity magnitude increases. Applications of this study include hazard analyses for unintended escapement and informed design of intelligent migratory barriers such as those to be developed at FishPass, an instream research facility under design for the Boardman (Ottaway) River in Traverse City, MI, USA. Full article

Fish–parasite systems could be subject to two scenarios under climate change: (i) increased water temperature might enhance parasite metabolism, allowing the parasite to spread rapidly; (ii) parasitism could decrease if the optimal temperature for growth and transmission is exceeded. Sea lice are parasitic copepods commonly found on marine fish in tropical regions, yet their biology remains poorly investigated. In this study, we analyzed the changes in infection levels and the transcriptomic response of the tropical sea louse Caligus confusus to two seasonal seawater temperatures (30 °C, “warm”, and 21 °C, “cold”). The prevalence of C. confusus was significantly higher in the colder water. A de novo transcriptomic analysis of C. confusus, the first for a tropical sea louse, revealed 426 over-expressed and 1402 down-expressed transcripts at the lower temperature. In particular, we observed over-expression of transcripts encoding vitellogenins (vit-1, vit-2, vit-4, and vit-6) and matrix metalloproteinases (mmp-2 and mmp-9), which are involved in reproduction and development. These results suggest that the cold tropical season physiologically favors C. confusus and that low temperature favors embryo development, which might ultimately lead to a higher prevalence. It is possible, therefore, that climate change could reduce some tropical sea lice populations during extreme warming events. Full article

The Rio Doce basin is situated in a biodiversity hotspot, with some fish groups still superficially known. The intense process of habitat loss and water contamination justifies efforts to speed up the pace of describing fish species diversity. Herein, we focus on a clade of trichomycterine catfishes, subgenus Psammocambeva, genus Trichomycterus, performing a multigene phylogenetic analysis, which integrated to a comparative morphological analysis corroborates monophyly and relationships of four species complexes. Five new species are recognised and described. Species distribution patterns support the recognition of five areas of endemism for trichomycterines, most of which are well-known biodiversity centres: Serra do Espinhaço, Serra do Brigadeiro, Serra do Caparaó, Serra do Castelo, and upper-middle Rio Doce. Trichomycterine diversity in the Rio Doce basin, with 16 species, of which 15 belong to Psammocambeva, is lower than in the smaller neighbouring Rio Paraíba do Sul basin, with 21 species in five subgenera. Data suggest that species diversification in the former basin is relatively younger, following the initial diversification of Psammocambeva in the Miocene, whereas diversification in the latter basin has been estimated to have occurred during the Oligocene. This study reinforces the importance of naming new taxa and delimitating areas of endemism as primary tools for conservation strategies. Full article

Intestinal bacterial communities play an important role in the growth and health of aquatic animal hosts and have drawn increasing attention. However, the role of the intestinal microbiota in the growth of freshwater prawns remains unclear. Here, the intestinal microbiota of freshwater prawns (Macrobrachium rosenbergii) at different life stages (one, two, and three months old) were investigated using 16S rRNA sequencing. The results showed that community richness and diversity increased with growth, which might be one of the reasons that the prawns maintained a fast growth rate before sexual maturation. Three core phyla were identified in the one-month-old group, namely, Firmicutes (79.24%), Proteobacteria (17.09%) and Actinobacteriota (2.01%). Five core phyla were identified in the two-month-old group, including Firmicutes (47.84%), Proteobacteria (44.22%), Actinobacteriota (1.83%), Acidobacteriota (1.66%) and Bacteroidota (1.24%), and the core phyla in the three-month-old group were similar, except for Acidobacterota, which was not identified. A total of 12 core genera were identified in all samples, and significant differences were observed in the relative abundance of gut microbiota between the three groups (p < 0.05). Exiguobacterium, Lactococcus and Shewanella were the three most significantly differentially abundant genera between stages. In addition, Candidatus Hepatoplasma was detected only in the two- and three-month-old prawn groups. This study provides information on the differences in the intestinal microbiota in different developmental stages, which contribute to adaptation to salinity in the early developmental stage and digestive ability to meet the growth needs of Macrobrachium rosenbergii. Full article