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575 Results Found

  • Concept Paper
  • Open Access
10 Citations
5,371 Views
17 Pages

Open Access to the Digital Biodiversity Database: A Comprehensive Functional Model of the Natural History Collections

  • Bogdan Jackowiak,
  • Marcin Lawenda,
  • Maciej M. Nowak,
  • Paweł Wolniewicz,
  • Jerzy Błoszyk,
  • Michał Urbaniak,
  • Piotr Szkudlarz,
  • Damian Jędrasiak,
  • Justyna Wiland-Szymańska and
  • Rafał Bajaczyk
  • + 1 author

27 July 2022

The Natural History Collections of Adam Mickiewicz University (AMUNATCOLL) in Poznań contain over 2.2 million specimens. Until recently, access to the collections was limited to specialists and was challenging because of the analogue data files....

  • Article
  • Open Access
9 Citations
4,371 Views
16 Pages

24 November 2022

Achieving accurate STR genotyping by using next-generation sequencing data has been challenging. To provide the forensic genetics community with a reliable open-access STR database, we conducted a comprehensive genotyping analysis of a set of STRs of...

  • Review
  • Open Access
6 Citations
13,779 Views
15 Pages

Mammography Datasets for Neural Networks—Survey

  • Adam Mračko,
  • Lucia Vanovčanová and
  • Ivan Cimrák

Deep neural networks have gained popularity in the field of mammography. Data play an integral role in training these models, as training algorithms requires a large amount of data to capture the general relationship between the model’s input a...

  • Communication
  • Open Access
4 Citations
3,116 Views
8 Pages

An Extensive Field-Scale Dataset of Topsoil Organic Carbon Content Aimed to Assess Remote Sensed Datasets and Data-Derived Products from Modeling Approaches

  • Ahmed Laamrani,
  • Paul R. Voroney,
  • Daniel D. Saurette,
  • Aaron A. Berg,
  • Line Blackburn,
  • Adam W. Gillespie and
  • Ralph C. Martin

2 November 2022

The geosciences suffer from a lack of large georeferenced datasets that can be used to assess and monitor the role of soil organic carbon (SOC) in plant growth, soil fertility, and CO2 sequestration. Publicly available, large field-scale georeference...

  • Article
  • Open Access
7 Citations
2,742 Views
11 Pages

ScorpDb: A Novel Open-Access Database for Integrative Scorpion Toxinology

  • Masoumeh Baradaran,
  • Fatemeh Salabi,
  • Masoud Mahdavinia,
  • Elaheh Mohammadi,
  • Babak Vazirianzadeh,
  • Ignazio Avella,
  • Seyed Mahdi Kazemi and
  • Tim Lüddecke

18 November 2024

Scorpion stings are a significant public health concern globally, particularly in tropical and subtropical regions. Scorpion venoms contain a diverse array of bioactive peptides, and different scorpion species around the world typically exhibit varyi...

  • Article
  • Open Access
7 Citations
13,515 Views
12 Pages

Although theoretically the patent system is meant to bolster innovation, the current United States Patent and Trademark Office (USPTO) is cumbersome and involves a significant time investment to locate inactive patents less than 20 years old. This ar...

  • Data Descriptor
  • Open Access
1 Citations
3,285 Views
16 Pages

A Compendium of Chemical Class and Use Type Open Access Databases

  • Niklas Heinemann,
  • Sascha Bub,
  • Jakob Wolfram,
  • Sebastian Stehle,
  • Lara L. Petschick and
  • Ralf Schulz

4 December 2020

With an ever-increasing production and registration of chemical substances, obtaining reliable and up to date information on their use types (UT) and chemical class (CC) is of crucial importance. We evaluated the current status of open access chemica...

  • Feature Paper
  • Article
  • Open Access
7 Citations
4,794 Views
21 Pages

15 July 2020

Highly fragmented land property hinders the planning and management of single species tree plantations. In such situations, acquiring information about the available resources is challenging. This study aims to propose a method to locate and characte...

  • Communication
  • Open Access
12 Citations
3,463 Views
12 Pages

7 April 2022

The availability of a high-quality genome sequence of Brassica campestris ssp. chinensis NHCC001 has paved the way for deep mining of genome data. We used the B. campestris NHCC001 draft genome to develop a comprehensive database, known as the non-he...

  • Article
  • Open Access
13 Citations
4,809 Views
24 Pages

28 January 2020

Digital evolution underwent great progress in the late 20th century, democratizing the use of the Internet and, therefore, access to public sources of information. This technological shift caused great impacts on different fields, including Industria...

  • Article
  • Open Access
9 Citations
5,297 Views
14 Pages

Northwest Native Plants: A Digital Space for Paleoethnobotanical Knowledges and Biocultural Heritage

  • Molly Carney,
  • Melanie Diedrich,
  • John C. Blong,
  • Jade d’Alpoim Guedes,
  • Tiffany J. Fulkerson,
  • Tiffany Kite,
  • Katy Leonard-Doll,
  • Joyce LeCompte-Mastenbrook,
  • Mario Zimmermann and
  • Shannon Tushingham

26 January 2022

Biocultural heritage preservation relies on ethnobotanical knowledge and the paleoethnobotanical data used in (re)constructing histories of human–biota interactions. Biocultural heritage, defined as the knowledge and practices of Indigenous and...

  • Commentary
  • Open Access
27 Citations
10,131 Views
9 Pages

Open Access Data Sharing in Genomic Research

  • Stacey Pereira,
  • Richard A. Gibbs and
  • Amy L. McGuire

29 August 2014

The current emphasis on broad sharing of human genomic data generated in research in order to maximize utility and public benefit is a significant legacy of the Human Genome Project. Concerns about privacy and discrimination have led to policy respon...

  • Systematic Review
  • Open Access
7 Citations
6,602 Views
18 Pages

28 November 2022

Bangladesh is at the ecological transition between the Indo-Himalayan and Indo-Chinese subregions. The country also has one of the highest human population densities in the world and only 6% remaining natural habitat, putting much of its biodiversity...

  • Article
  • Open Access
91 Citations
8,259 Views
45 Pages

A Decade with VAMDC: Results and Ambitions

  • Damien Albert,
  • Bobby K. Antony,
  • Yaye Awa Ba,
  • Yuri L. Babikov,
  • Philippe Bollard,
  • Vincent Boudon,
  • Franck Delahaye,
  • Giulio Del Zanna,
  • Milan S. Dimitrijević and
  • Brian J. Drouin
  • + 63 authors

21 October 2020

This paper presents an overview of the current status of the Virtual Atomic and Molecular Data Centre (VAMDC) e-infrastructure, including the current status of the VAMDC-connected (or to be connected) databases, updates on the latest technological de...

  • Review
  • Open Access
137 Citations
11,700 Views
40 Pages

Data Needs for Modeling Low-Temperature Non-Equilibrium Plasmas: The LXCat Project, History, Perspectives and a Tutorial

  • Emile Carbone,
  • Wouter Graef,
  • Gerjan Hagelaar,
  • Daan Boer,
  • Matthew M. Hopkins,
  • Jacob C. Stephens,
  • Benjamin T. Yee,
  • Sergey Pancheshnyi,
  • Jan van Dijk and
  • Leanne Pitchford

24 February 2021

Technologies based on non-equilibrium, low-temperature plasmas are ubiquitous in today’s society. Plasma modeling plays an essential role in their understanding, development and optimization. An accurate description of electron and ion collisions wit...

  • Article
  • Open Access
1 Citations
2,109 Views
27 Pages

22 March 2025

For decades, thousands of scientific institutions worldwide have been digitizing collections documenting biodiversity. The advantages and benefits of this process are widely described. In this study, we test the hypothesis that digital data from loca...

  • Article
  • Open Access
13 Citations
5,408 Views
19 Pages

23 February 2022

This study explored the differences in the effects of collective intelligence and references on open innovation between open and closed access journals. This study analyzed the moderating effect of references on the motivation of collective intellige...

  • Article
  • Open Access
4 Citations
3,875 Views
17 Pages

21 February 2023

The building sector is a major contributor to greenhouse gases, consuming significant energy and available resources. Energy renovation of buildings is an effective strategy for decarbonisation, as it lowers operational energy and avoids the embodied...

  • Article
  • Open Access
2 Citations
3,306 Views
19 Pages

A Multidimensional Analysis of Factors Impacting Mobility of Open-Access Multilane Highways

  • Jamal Ahmed Khan,
  • Muhammad Bilal Khurshid,
  • Arshad Hussain and
  • Asif Azam

Open-access multilane highways have a significant share in the highway network of Pakistan and other developing countries in Asia. These highways have high access density, design inconsistency, and other operational characteristics that differentiate...

  • Article
  • Open Access
3 Citations
6,352 Views
17 Pages

25 November 2015

The storage of hydrogen is considered as the bottleneck in the implementation of portable fuel cell power generating systems. The necessary experimental studies to discover and develop appropriate storage materials are always time-limited. We discuss...

  • Article
  • Open Access
16 Citations
6,548 Views
21 Pages

The study has developed an online geospatial database for assessing the complexity of roadway heritage, overcoming the limitations of traditional heritage catalogues and databases: the itemization of heritage assets and the rigidity of the database s...

  • Article
  • Open Access
4 Citations
4,586 Views
19 Pages

Open Access data plays an increasingly important role in discussions of environmental issues. Limited availability or poor quality data can impede citizen participation in environmental dialogue, leading to their voices being undermined. This study a...

  • Article
  • Open Access
3 Citations
3,173 Views
17 Pages

16 May 2024

The heritage science sector is facing a critical need for accessible and comprehensive data resources to facilitate research, preservation efforts, and interdisciplinary collaboration. The concept of FAIR data management involves embracing principles...

  • Article
  • Open Access
4 Citations
2,360 Views
19 Pages

7 February 2025

Understanding the status and progress of tourism is a critical step for formulating sustainable tourism strategies. A traditional statistical data-based evaluation of tourism development is costly and time-consuming. Recently, remote sensing data and...

  • Article
  • Open Access
2,347 Views
15 Pages

Life Science—Microbial Culture Collections Data Integration Tasks

  • Alexander Vasilenko,
  • Galina Kochkina,
  • Natalya Ivanushkina and
  • Svetlana Ozerskaya

22 December 2022

This paper presents interconnections between catalogs of microbial culture collections and biological databases inspected. Microbial Biological Resources Centers (mBRCs) provide Life Science (LS) and biotechnology with fit-for-use microbiological res...

  • Feature Paper
  • Article
  • Open Access
5 Citations
7,711 Views
18 Pages

Changing the Academic Gender Narrative through Open Access

  • Katie Wilson,
  • Chun-Kai (Karl) Huang,
  • Lucy Montgomery,
  • Cameron Neylon,
  • Rebecca N. Handcock,
  • Alkim Ozaygen and
  • Aniek Roelofs

In this article, we ask whether dominant narratives of gender and performance within academic institutions are masking stories that may be both more complex and potentially more hopeful than those which are often told using publication-related data....

  • Article
  • Open Access
1,346 Views
22 Pages

10 January 2025

Biologists often set out to find relevant data in an ever-changing landscape of interesting databases. While leading journals publish descriptions of databases, they are usually not recent and do not frequently update the list that discards defunct o...

  • Article
  • Open Access
15 Citations
5,437 Views
26 Pages

A Framework of Dam-Break Hazard Risk Mapping for a Data-Sparse Region in Indonesia

  • Doddi Yudianto,
  • Bobby Minola Ginting,
  • Stephen Sanjaya,
  • Steven Reinaldo Rusli and
  • Albert Wicaksono

This paper introduces a new simple approach for dam-break hazard mapping in a data-sparse region. A hypothetical breaching case of an earthen dam, i.e., the Ketro Dam in Central Java, (Indonesia) was considered. Open-access hydrological databases, i....

  • Article
  • Open Access
20 Citations
4,849 Views
15 Pages

High-throughput virtual screening (HTVS) is, in conjunction with rapid advances in computer hardware, becoming a staple in drug design research campaigns and cheminformatics. In this context, virtual compound library design becomes crucial as it gene...

  • Editorial
  • Open Access
2 Citations
2,583 Views
5 Pages

In this editorial, we will introduce the contributions to the Special Issue entitled “Measuring Open Access Uptake: Databases, Metrics, and International Comparisons.” The contributions to this Special Issue explore the methods and metric...

  • Review
  • Open Access
2 Citations
1,590 Views
25 Pages

i-PHAOS: An Overview with an Open-Source Collaborative Database on Miniaturized Integrated Spectrometers

  • Carla Maria Coppola,
  • Martino De Carlo,
  • Francesco De Leonardis and
  • Vittorio M. N. Passaro

18 October 2024

On-chip spectrometers are increasingly becoming tools that might help in everyday life needs. The possibility offered by several available integration technologies and materials to be used to miniaturize spectrometers has led to a plethora of very di...

  • Protocol
  • Open Access
17 Citations
7,388 Views
14 Pages

Artificial Intelligence in Wound Care Education: Protocol for a Scoping Review

  • Rúben Encarnação,
  • Tânia Manuel,
  • Hélder Palheira,
  • João Neves-Amado and
  • Paulo Alves

14 March 2024

As healthcare continues evolving in the age of digital technology, the integration of artificial intelligence has emerged as a powerful force, particularly in wound care. The education of healthcare professionals in wound care is crucial for ensuring...

  • Article
  • Open Access
8 Citations
6,740 Views
12 Pages

Online Database for Retrieval Information about Prebiotics and Their Activity

  • Elena Guseva,
  • Boris Karetkin,
  • Diana Batyrgazieva,
  • Natalia Menshutina and
  • Victor Panfilov

11 May 2020

The number of studies aimed at proving the prebiotic properties of certain substances or compositions has been actively increasing, which has led to a large accumulation of scientific information that is fragmented and not systematized. Moreover, a n...

  • Article
  • Open Access
28 Citations
10,160 Views
16 Pages

OpenBiodiv: A Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science

  • Lyubomir Penev,
  • Mariya Dimitrova,
  • Viktor Senderov,
  • Georgi Zhelezov,
  • Teodor Georgiev,
  • Pavel Stoev and
  • Kiril Simov

Hundreds of years of biodiversity research have resulted in the accumulation of a substantial pool of communal knowledge; however, most of it is stored in silos isolated from each other, such as published articles or monographs. The need for a system...

  • Article
  • Open Access
44 Citations
15,601 Views
15 Pages

Scientific Production on Open Access: A Worldwide Bibliometric Analysis in the Academic and Scientific Context

  • Sandra Miguel,
  • Ely Francina Tannuri de Oliveira and
  • Maria Cláudia Cabrini Grácio

This research aims to diachronically analyze the worldwide scientific production on open access, in the academic and scientific context, in order to contribute to knowledge and visualization of its main actors. As a method, bibliographical, descripti...

  • Review
  • Open Access
3 Citations
5,131 Views
15 Pages

14 March 2023

This research paper describes the approaches and perspectives of telemedicine worldwide. The objective of this literature review was to analyze the theoretical and empirical studies that address telemedicine management in the last 10 years based on t...

  • Article
  • Open Access
1,784 Views
34 Pages

A FAIR Resource Recommender System for Smart Open Scientific Inquiries

  • Syed N. Sakib,
  • Sajratul Y. Rubaiat,
  • Kallol Naha,
  • Hasan H. Rahman and
  • Hasan M. Jamil

26 July 2025

A vast proportion of scientific data remains locked behind dynamic web interfaces, often called the deep web—inaccessible to conventional search engines and standard crawlers. This gap between data availability and machine usability hampers the...

  • Article
  • Open Access
1 Citations
3,667 Views
18 Pages

25 November 2021

The availability of numerous online databases offers new and tremendous opportunities for social science research. Furthermore, databases based on news reports often allow scholars to investigate issues otherwise hard to tackle, such as, for example,...

  • Article
  • Open Access
1 Citations
3,422 Views
10 Pages

MetaFetcheR: An R Package for Complete Mapping of Small-Compound Data

  • Sara A. Yones,
  • Rajmund Csombordi,
  • Jan Komorowski and
  • Klev Diamanti

28 October 2021

Small-compound databases contain a large amount of information for metabolites and metabolic pathways. However, the plethora of such databases and the redundancy of their information lead to major issues with analysis and standardization. A lack of p...

  • Article
  • Open Access
40 Citations
10,441 Views
18 Pages

20 June 2021

In the field of affective computing, achieving accurate automatic detection of facial movements is an important issue, and great progress has already been made. However, a systematic evaluation of systems that now have access to the dynamic facial da...

  • Article
  • Open Access
38 Citations
5,817 Views
17 Pages

Forests’ First Decade: A Bibliometric Analysis Overview

  • Juan Uribe-Toril,
  • José Luis Ruiz-Real,
  • Julia Haba-Osca and
  • Jaime de Pablo Valenciano

19 January 2019

Forests is a Swiss open access journal in the field of forestry and forest ecology founded in 2010. Currently, the journal celebrates its 10th anniversary. Therefore, the purpose of this research for the special issue A Decade of Forests Open Access...

  • Data Descriptor
  • Open Access
5 Citations
5,305 Views
8 Pages

Extensible Database of Validated Biomass Smoke Events for Health Research

  • Ivan C. Hanigan,
  • Geoffrey G. Morgan,
  • Grant J. Williamson,
  • Farhad Salimi,
  • Sarah B. Henderson,
  • Murray R. Turner,
  • David M. J. S. Bowman and
  • Fay H. Johnston

6 December 2018

The extensible Biomass Smoke Validated Events Database is an ongoing, community driven, collection of air pollution events which are known to be caused by vegetation fires such as bushfires (also known as wildfire and wildland fires), or prescribed f...

  • Article
  • Open Access
10 Citations
8,439 Views
12 Pages

8 June 2018

Although significant progress has been made in our understanding of fungal diversity, identification based on phenotype can be difficult, even for trained experts. Fungi typically have a cryptic nature and can have a similar appearance to distantly r...

  • Article
  • Open Access
543 Views
29 Pages

10 November 2025

This paper presents FRESCO (Fiber REinforced Strengthening COmposite Database), a comprehensive open-source database designed to systematically organize experimental data on infilled RC frame systems that can be strengthened with advanced composite m...

  • Article
  • Open Access
6 Citations
8,041 Views
21 Pages

A Delay-Based Machine Learning Model for DMA Attack Mitigation

  • Yutian Gui,
  • Chaitanya Bhure,
  • Marcus Hughes and
  • Fareena Saqib

Direct Memory Access (DMA) is a state-of-the-art technique to optimize the speed of memory access and to efficiently use processing power during data transfers between the main system and a peripheral device. However, this advanced feature opens secu...

  • Article
  • Open Access
1 Citations
2,624 Views
17 Pages

Semantic Data Visualisation for Biomedical Database Catalogues

  • Arnaldo Pereira,
  • João Rafael Almeida,
  • Rui Pedro Lopes and
  • José Luís Oliveira

15 November 2022

Biomedical databases often have restricted access policies and governance rules. Thus, an adequate description of their content is essential for researchers who wish to use them for medical research. A strategy for publishing information without disc...

  • Proceeding Paper
  • Open Access
1 Citations
2,191 Views
8 Pages

OpenSim Visualization of the Classification of Finger Movements Based on Electromyography Signal as the Single-Input Variable during Predefined Movements

  • Jose A. Amezquita-Garcia,
  • Miguel E. Bravo-Zanoguera,
  • Roberto L. Avitia,
  • Marco A. Reyna and
  • Daniel Cuevas-González

1 November 2021

A classifier is commonly generated for multifunctional prostheses control or also as input devices in human–computer interfaces. The complementary use of the open-access biomechanical simulation software, OpenSim, is demonstrated for the hand-m...

  • Article
  • Open Access
9 Citations
3,924 Views
21 Pages

Research Trends in Advanced Glycation End Products and Obesity: Bibliometric Analysis

  • Patricia Budihartanti Liman,
  • Karina Shasri Anastasya,
  • Nabila Maudy Salma,
  • Yenny Yenny and
  • Meutia Atika Faradilla

9 December 2022

The aim of this study was to conduct a bibliometric analysis of the scientific articles on advanced glycation end products (AGEs) and obesity. English-language journal articles about AGEs and obesity were retrieved from the Scopus database. The OpenR...

  • Proceeding Paper
  • Open Access
2,740 Views
11 Pages

Freely accessible online databases developed by cultural and artistic institutions (e.g., museums, libraries, universities, studios, etc.) enable the transnational dissemination of catalogues of cultural and creative works, exploiting the advantages...

  • Communication
  • Open Access
2 Citations
2,655 Views
15 Pages

Meet the Medicines—A Crowdsourced Approach to Collecting and Communicating Information about Essential Medicines Online

  • Yaela N. Golumbic,
  • Kymberley R. Scroggie,
  • Ciara R. Kenneally,
  • Jiarun Lin,
  • Mitchell T. Blyth,
  • Genevieve Firmer,
  • Peter J. Rutledge and
  • Alice Motion

The World Health Organization (WHO) maintains a list of medicines and medical devices, essential medicines, that should be available to everyone, to form a functioning healthcare system. Yet, many of these medicines remain out of reach for people aro...

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