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  • Article
  • Open Access
5 Citations
3,011 Views
19 Pages

The discovery of spatio-temporal co-occurrence patterns (STCPs) among multiple types of crimes whose events frequently co-occur in neighboring space and time is crucial to the joint prevention of crimes. However, the crime event occurrence time is of...

  • Article
  • Open Access
21 Citations
7,605 Views
17 Pages

Daily Activity Patterns and Co-Occurrence of Duikers Revealed by an Intensive Camera Trap Survey across Central African Rainforests

  • Fructueux G. A. Houngbégnon,
  • Daniel Cornelis,
  • Cédric Vermeulen,
  • Bonaventure Sonké,
  • Stephan Ntie,
  • Adeline Fayolle,
  • Davy Fonteyn,
  • Simon Lhoest,
  • Quentin Evrard and
  • Jean-Louis Doucet
  • + 6 authors

24 November 2020

The duiker community in Central African rainforests includes a diversity of species that can coexist in the same area. The study of their activity patterns is needed to better understand habitat use or association between the species. Using camera tr...

  • Article
  • Open Access
10 Citations
3,894 Views
17 Pages

Microbial Community Structure and Co-Occurrence Patterns in Closed and Open Subsidence Lake Ecosystems

  • Shun Wang,
  • Youbiao Hu,
  • Tingyu Fan,
  • Wangkai Fang,
  • Xiaopeng Liu,
  • Liangji Xu,
  • Bing Li and
  • Xiangping Wei

11 May 2023

Different types of subsidence lakes formed by underground coal mining are severely polluted by mine-production wastewater, domestic sewage, and agricultural irrigation water. Microbial communities perform a crucial role in biogeochemical cycling proc...

  • Article
  • Open Access
7 Citations
2,696 Views
19 Pages

Response of Soil Bacterial Diversity, Predicted Functions and Co-Occurrence Patterns to Nanoceria and Ionic Cerium Exposure

  • Jie Zhang,
  • Hui-Sheng Meng,
  • Yan-Meng Shang,
  • Jamie R. Lead,
  • Zhang-Zhen Guo and
  • Jian-Ping Hong

Release of nanoceria (nCeO2) into the environment has caused much concern about its potential toxicity, which still remains poorly understood for soil microorganisms. In this study, nanoceria and cerium (III) nitrate at different doses (10, 100 and 5...

  • Article
  • Open Access
3 Citations
1,766 Views
17 Pages

Deciphering Soil Keystone Microbial Taxa: Structural Diversity and Co-Occurrence Patterns from Peri-Urban to Urban Landscapes

  • Naz Iram,
  • Yulian Ren,
  • Run Zhao,
  • Shui Zhao,
  • Chunbo Dong,
  • Yanfeng Han and
  • Yanwei Zhang

Assessing microbial community stability and soil quality requires understanding the role of keystone microbial taxa in maintaining diversity and functionality. This study collected soil samples from four major habitats in the urban and peri-urban are...

  • Communication
  • Open Access
1,009 Views
10 Pages

PAH contamination from coking plants have received widespread attention. However, the microbial diversity, co-occurrence patterns, and functional genes of bacteria in aged coking contaminated soils by PAHs are still not clear. In our study, we used a...

  • Article
  • Open Access
9 Citations
4,572 Views
19 Pages

13 December 2024

Sustainable management of organic waste, such as food waste (FW) and livestock manure (LS), is essential for reducing pollution and promoting resource recycling. This study investigated the effects of Bacillus sp. inoculation and biochar addition on...

  • Article
  • Open Access
18 Citations
4,895 Views
11 Pages

15 May 2020

Detecting patterns of species co-occurrence is among the main tasks of plant community ecology. Arable plant communities are important elements of agroecosystems, because they support plant and animal biodiversity and provide ecosystem services. Thes...

  • Article
  • Open Access
8 Citations
3,443 Views
14 Pages

Drying Shapes Aquatic Fungal Community Assembly by Reducing Functional Diversity

  • Rebeca Arias-Real,
  • Pilar Hurtado,
  • Giulia Gionchetta and
  • Cayetano Gutiérrez-Cánovas

16 February 2023

Aquatic fungi are highly diverse organisms that play a critical role in global biogeochemical cycles. Yet it remains unclear which assembly processes determine their co-occurrence and assembly patterns over gradients of drying intensity, which is a c...

  • Article
  • Open Access
42 Citations
8,486 Views
15 Pages

17 April 2012

Our aim was to investigate species co-occurrence patterns in a large number of published biotic communities, in order to document to what extent species associations can be found in presence-absence matrices. We also aim to compare and evaluate two m...

  • Article
  • Open Access
7 Citations
4,368 Views
24 Pages

Differences in Urban Development in China from the Perspective of Point of Interest Spatial Co-Occurrence Patterns

  • Guangsheng Dong,
  • Rui Li,
  • Fa Li,
  • Zhaohui Liu,
  • Huayi Wu,
  • Longgang Xiang,
  • Wensen Yu,
  • Jie Jiang,
  • Hongping Zhang and
  • Fangning Li

An imbalance in urban development in China has become a contradiction. Points of Interest (POIs) serve as representations of the spatial distribution of urban functions. Analyzing POI spatial co-occurrence patterns can reveal the agglomeration patter...

  • Article
  • Open Access
7 Citations
2,619 Views
14 Pages

Fire and Rhizosphere Effects on Bacterial Co-Occurrence Patterns

  • Effimia M. Papatheodorou,
  • Spiros Papakostas and
  • George P. Stamou

Fires are common in Mediterranean soils and constitute an important driver of their evolution. Although fire effects on vegetation dynamics are widely studied, their influence on the assembly rules of soil prokaryotes in a small-scale environment has...

  • Article
  • Open Access
1,703 Views
17 Pages

Biotic Interactions Shape Soil Bacterial Beta Diversity Patterns along an Altitudinal Gradient during Invasion

  • Yuchao Wang,
  • Wenyan Xue,
  • Jinlin Lyu,
  • Ming Yue,
  • Zhuxin Mao,
  • Xuejian Shen,
  • Xue Wang,
  • Yang Li and
  • Qian Li

Invasive plants have already been observed in the understory of mountain forests, which are often considered a safe shelter for most native plants. Microorganisms might be drivers of plant invasions. Nevertheless, the mechanisms determining variation...

  • Article
  • Open Access
3 Citations
2,889 Views
13 Pages

Dynamics of Planktonic Microbial Community Associated with Saccharina japonica Seedling

  • Shanshan Wang,
  • Yongwei Yan,
  • Hao Qian,
  • Jie Li,
  • Tao Liu and
  • Zhaolan Mo

Macroalgae interact with planktonic microbes in seawater. It remains unclear how planktonic microbes interact with the environment and each other during the cultivation processes of commercially important algal species. Such an interaction is importa...

  • Article
  • Open Access
2 Citations
1,659 Views
16 Pages

Burrowing animals are a critical driver of terrestrial ecosystem functioning, but we know little about their effects on soil microbiomes. Here, we evaluated the effect of burrowing animals on microbial assembly processes and co-occurrence patterns us...

  • Article
  • Open Access
3 Citations
2,694 Views
17 Pages

Graph-Based Feature Crossing to Enhance Recommender Systems

  • Congyu Cai,
  • Hong Chen,
  • Yunxuan Liu,
  • Daoquan Chen,
  • Xiuze Zhou and
  • Yuanguo Lin

18 January 2025

In recommendation tasks, most existing models that learn users’ preferences from user–item interactions ignore the relationships between items. Additionally, ensuring that the crossed features capture both global graph structures and loca...

  • Article
  • Open Access
7 Citations
7,109 Views
10 Pages

21 March 2012

Of the more than 300 species of Psocoptera described in North America, 44 species have been documented on eastern hemlock, Tsuga canadensis (L.) Carrière, in the southern Appalachians. However, the distribution and co-occurrence patterns of these spe...

  • Article
  • Open Access
5 Citations
2,437 Views
16 Pages

16 December 2024

Integrated rice–fish farming is an innovative agricultural production pattern that combines rice cultivation with fish farming, enhancing agricultural productivity and ensuring food security. Partitioned rice–fish farming, an advancement...

  • Article
  • Open Access
4 Citations
3,984 Views
12 Pages

Gut Microbial Shifts Indicate Melanoma Presence and Bacterial Interactions in a Murine Model

  • Marco Rossi,
  • Salvatore M. Aspromonte,
  • Frederick J. Kohlhapp,
  • Jenna H. Newman,
  • Alex Lemenze,
  • Russell J. Pepe,
  • Samuel M. DeFina,
  • Nora L. Herzog,
  • Robert Donnelly and
  • Andrew Zloza
  • + 3 authors

Through a multitude of studies, the gut microbiota has been recognized as a significant influencer of both homeostasis and pathophysiology. Certain microbial taxa can even affect treatments such as cancer immunotherapies, including the immune checkpo...

  • Article
  • Open Access
4 Citations
2,699 Views
21 Pages

28 May 2023

Ecological patterns of species distribution can reveal essential information on the spatial and functional relationship between species or species and their environment. Various approaches can be used to assess species associations, and our study aim...

  • Article
  • Open Access
7 Citations
6,293 Views
11 Pages

24 October 2012

Over 400 species of insects have been found in association with eastern hemlock in the southern Appalachians. Eastern hemlock stands provide an ideal habitat for all life stages of mycetophilids. However, the diversity, distribution and co-occurrence...

  • Article
  • Open Access
2 Citations
2,886 Views
14 Pages

Unraveling how microbial interactions and assembly process regulate the rhizosphere abundant and rare taxa is crucial for determining how species diversity affects rhizosphere microbiological functions. We assessed the rare and abundant taxa of rhizo...

  • Article
  • Open Access
2 Citations
2,260 Views
24 Pages

Coronary artery disease (CAD) remains a major global health concern, significantly contributing to morbidity and mortality. This study aimed to investigate the co-occurrence patterns of diagnoses and comorbidities in CAD patients using a network-base...

  • Article
  • Open Access
1,951 Views
16 Pages

Bacteria and archaea are foundational life forms on Earth and play crucial roles in the development of our planet’s biological hierarchy. Their interactions influence various aspects of life, including eukaryotic cell biology, molecular biology...

  • Article
  • Open Access
31 Citations
4,774 Views
19 Pages

Soil Bacterial Community Shifts Are Driven by Soil Nutrient Availability along a Teak Plantation Chronosequence in Tropical Forests in China

  • Zhi Yu,
  • Kunnan Liang,
  • Guihua Huang,
  • Xianbang Wang,
  • Mingping Lin,
  • Yinglong Chen and
  • Zaizhi Zhou

15 December 2021

Soil bacterial communities play crucial roles in ecosystem functions and biogeochemical cycles of fundamental elements and are sensitive to environmental changes. However, the response of soil bacterial communities to chronosequence in tropical ecosy...

  • Article
  • Open Access
1 Citations
1,174 Views
14 Pages

Spatiotemporal Dynamics of Bacterial Community Assembly and Co-Occurrence Patterns in Biological Soil Crusts of Desert Ecosystems

  • Runze Bao,
  • Kai Tang,
  • Yanfu Ji,
  • Shengnan Zhang,
  • Chunying Wang,
  • Yungang Liang,
  • Xiujuan Zhao and
  • Jianyu Meng

Biological soil crusts (BSCs) play a fundamental role in desert ecosystems by stabilizing soil, cycling nutrients, and retaining moisture. However, the assembly processes governing bacterial communities within BSCs remain largely unknown. This study...

  • Article
  • Open Access
3 Citations
3,036 Views
25 Pages

The occurrence of per- and polyfluoroalkyl substances (PFASs) in drinking water remains a critical environmental and public health concern. This study examines the presence of both regulated and unregulated PFASs in twenty-one bottled water and twent...

  • Article
  • Open Access
6 Citations
2,931 Views
13 Pages

11 April 2022

Planktonic microorganisms in aquatic ecosystems form complex assemblages of highly interactive taxa and play key roles in biogeochemical cycles. However, the microbial interactions within bacterial and microeukaryotic communities, and the mechanisms...

  • Article
  • Open Access
21 Citations
5,661 Views
15 Pages

Detecting microbial interactions is essential to the understanding of the structure and function of the gut microbiome. In this study, microbial co-occurrence patterns were inferred using a random matrix theory based approach in the gut microbiome of...

  • Article
  • Open Access
6 Citations
3,116 Views
19 Pages

Spatial Variations of Aquatic Bacterial Community Structure and Co-Occurrence Patterns in a Coal Mining Subsidence Lake

  • Tingyu Fan,
  • Wangkai Fang,
  • Yifan Zhao,
  • Akang Lu,
  • Shun Wang,
  • Xingming Wang,
  • Liangji Xu,
  • Xiangping Wei and
  • Lei Zhang

18 August 2022

Land subsidence caused by underground coal mining critically influences the structure and function of ecosystems in mining areas. However, knowledge on the aquatic bacterial community structure and interspecies interactions in subsidence lakes are st...

  • Feature Paper
  • Article
  • Open Access
19 Citations
5,398 Views
14 Pages

25 June 2021

Froth image analysis has been considered widely in the identification of operational regimes in flotation circuits, the characterisation of froths in terms of bubble size distributions, froth stability and local froth velocity patterns, or as a basis...

  • Article
  • Open Access
6 Citations
3,757 Views
21 Pages

Symbiotic microorganisms in reef-building corals, including algae, bacteria, archaea, fungi, and viruses, play critical roles in the adaptation of coral hosts to adverse environmental conditions. However, their adaptation and functional relationships...

  • Article
  • Open Access
17 Citations
8,529 Views
19 Pages

25 May 2020

Tetrodotoxin (TTX) is a potent neurotoxin isolated mainly from toxic puffer fish. To date, the TTX biosynthetic mechanism inside its hosts remains unresolved. Here, we hypothesize the TTX synthesis relies on the host gut microbiota, including the neg...

  • Article
  • Open Access
391 Views
25 Pages

21 January 2026

Although biochar and manure have been shown in many studies to influence abundant microbial communities, their differential effects on the rare and abundant microbial communities in soybean–corn intercropping systems remain poorly understood. U...

  • Feature Paper
  • Article
  • Open Access
10 Citations
4,747 Views
14 Pages

20 April 2020

Cross-taxon analyses can explain patterns of interaction between taxa and their application in conservation studies can drive management actions. In a coastal sand dune system characterized by a high human pressure, we explored the co-occurrence patt...

  • Article
  • Open Access
16 Citations
4,836 Views
33 Pages

On the Quantification of Visual Texture Complexity

  • Fereshteh Mirjalili and
  • Jon Yngve Hardeberg

10 September 2022

Complexity is one of the major attributes of the visual perception of texture. However, very little is known about how humans visually interpret texture complexity. A psychophysical experiment was conducted to visually quantify the seven texture attr...

  • Article
  • Open Access
38 Citations
10,156 Views
22 Pages

18 February 2022

Texture analysis is key to better understanding of the relationships between the microstructures of the materials and their properties, as well as the use of models in process systems using raw signals or images as input. Recently, new methods based...

  • Article
  • Open Access
27 Citations
7,085 Views
15 Pages

Response of the Arthropod Community to Soil Characteristics and Management in the Franciacorta Viticultural Area (Lombardy, Italy)

  • Isabella Ghiglieno,
  • Anna Simonetto,
  • Francesca Orlando,
  • Pierluigi Donna,
  • Marco Tonni,
  • Leonardo Valenti and
  • Gianni Gilioli

Soil represents an important pool of biodiversity, hosting about a quarter of the living species on our planet. This soil richness has led to increasing interest in the structural and functional characteristics of its biodiversity. Studies of arthrop...

  • Article
  • Open Access
23 Citations
3,047 Views
19 Pages

The Yellow River is a valuable resource in the Ningxia Hui Autonomous Region and plays a vital role in local human activities and biodiversity. Bacteria are a crucial component of river ecosystems, but the driving factors and assembly mechanisms of b...

  • Article
  • Open Access
30 Citations
9,302 Views
22 Pages

31 January 2019

In the practical reality of face recognition applications, the human face can have only a limited number of training images. However, it is known that, in general, increasing the number of training images also increases the performance of face recogn...

  • Article
  • Open Access
114 Citations
16,252 Views
33 Pages

Image-Based Coral Reef Classification and Thematic Mapping

  • A.S.M. Shihavuddin,
  • Nuno Gracias,
  • Rafael Garcia,
  • Arthur C. R. Gleason and
  • Brooke Gintert

15 April 2013

This paper presents a novel image classification scheme for benthic coral reef images that can be applied to both single image and composite mosaic datasets. The proposed method can be configured to the characteristics (e.g., the size of the dataset,...

  • Article
  • Open Access
3 Citations
4,476 Views
28 Pages

29 June 2022

The research aim is to construct a disease-symptom knowledge graph (DSKG) as a cause-effect knowledge graph containing disease-symptom relations as a cause-effect relation type determined from downloaded documents on medical web-board resources. Each...

  • Article
  • Open Access
826 Views
16 Pages

Microbes colonizing cultural artifacts are a ubiquitous phenomenon which may occur during burial, post-excavation, and storage periods, thereby seriously affecting sustainable heritage conservation. In this study, high-throughput sequencing technolog...

  • Article
  • Open Access
14 Citations
1,688 Views
37 Pages

This study presents a computer-aided diagnostic (CAD) framework that integrates multi-domain features through a hybrid methodology. The system uses several light deep networks (EfficientNetB0, MobileNet, and ResNet-18), which feature fewer layers and...

  • Article
  • Open Access
48 Citations
7,891 Views
26 Pages

27 March 2020

Technology convergence has become a typical characteristic of innovation, which affects the evolution of industrial structures and the core competitiveness of organizations. However, the existing research has mainly focused on the development of core...

  • Article
  • Open Access
2 Citations
1,043 Views
20 Pages

Storage reservoirs are crucial components of long-distance water diversion projects, where water diversion may lead to changes in microbial diversity and community structure. Seasonal variations also drive alterations in microbial communities. Howeve...

  • Article
  • Open Access
2,353 Views
16 Pages

The Taiyangshan Wetland, a valuable wetland resource in the arid zone of central Ningxia, is critical for flood storage and drought resistance, climate regulation, and biodiversity protection. Nevertheless, the community structure and diversity of ba...

  • Article
  • Open Access
77 Citations
6,606 Views
31 Pages

19 February 2022

Leukemia is one of the most dangerous types of malignancies affecting the bone marrow or blood in all age groups, both in children and adults. The most dangerous and deadly type of leukemia is acute lymphoblastic leukemia (ALL). It is diagnosed by he...

  • Article
  • Open Access
26 Citations
5,080 Views
19 Pages

19 May 2021

Early detection of atrial fibrillation from electrocardiography (ECG) plays a vital role in the timely prevention and diagnosis of cardiovascular diseases. Various algorithms have been proposed; however, they are lacking in considering varied-length...

  • Article
  • Open Access
118 Views
28 Pages

The Water-Level-Fluctuation Zones (WLFZ) of the Lower Jinsha River, as a typical transition areas between land and water, show crucial ecological functions. However, the relationship between soil nutrients and microbial communities in different plant...

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