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87 Results Found

  • Article
  • Open Access
27 Citations
15,805 Views
28 Pages

DELTA50: A Highly Accurate Database of Experimental 1H and 13C NMR Chemical Shifts Applied to DFT Benchmarking

  • Ryan D. Cohen,
  • Jared S. Wood,
  • Yu-Hong Lam,
  • Alexei V. Buevich,
  • Edward C. Sherer,
  • Mikhail Reibarkh,
  • R. Thomas Williamson and
  • Gary E. Martin

Density functional theory (DFT) benchmark studies of 1H and 13C NMR chemical shifts often yield differing conclusions, likely due to non-optimal test molecules and non-standardized data acquisition. To address this issue, we carefully selected and me...

  • Article
  • Open Access
15 Citations
3,819 Views
22 Pages

6 January 2024

Accurate modeling of nonbonded interactions between protein kinases and their small molecule inhibitors is essential for structure-based drug design. Quantum chemical methods such as density functional theory (DFT) hold significant promise for quanti...

  • Article
  • Open Access
33 Citations
5,752 Views
13 Pages

A range of modern density functional theory (DFT) functionals have been benchmarked against experimentally determined metal hydride bond strengths for three first-row TM hydride complexes. Geometries were found to be produced sufficiently accurately...

  • Data Descriptor
  • Open Access
1 Citations
712 Views
12 Pages

Computational Dataset for Polymer–Pharmaceutical Interactions: MD/MM-PBSA and DFT Resources for Molecularly Imprinted Polymer (MIP) Design

  • David Visentin,
  • Mario Lovrić,
  • Dejan Milenković,
  • Robert Vianello,
  • Željka Maglica,
  • Kristina Tolić Čop and
  • Dragana Mutavdžić Pavlović

10 December 2025

Molecularly imprinted polymers (MIPs) are promising sorbents for selectively capturing pharmaceutically active compounds (PhACs), but design remains slow because candidate screening is largely experimental or based on computationally expensive method...

  • Article
  • Open Access
372 Views
21 Pages

What a Difference a Water Molecule Makes—A Combined Experimental/Theoretical Study on 2,3,5-triphenyl-2H-tetrazol-3-ium Chloride Hydrate in Solution and the Solid-State

  • Rim Bechaieb,
  • Maha F. El-Tohamy,
  • Haitham AlRabiah,
  • Gamal A. E. Mostafa,
  • Bruno Poti e Silva,
  • Maryam Niazi and
  • Axel Klein

31 December 2025

2,3,5-triphenyl-2H-tetrazol-3-ium (TPT) chloride was studied through a combination of theoretical methods and experimental data, revealing structural and physical-chemical properties of the hydrate salt, [TPT]Cl·H2O. The previously reported cr...

  • Article
  • Open Access
144 Citations
15,121 Views
22 Pages

Extensive Benchmarking of DFT+U Calculations for Predicting Band Gaps

  • Nicole E. Kirchner-Hall,
  • Wayne Zhao,
  • Yihuang Xiong,
  • Iurii Timrov and
  • Ismaila Dabo

8 March 2021

Accurate computational predictions of band gaps are of practical importance to the modeling and development of semiconductor technologies, such as (opto)electronic devices and photoelectrochemical cells. Among available electronic-structure methods,...

  • Article
  • Open Access
15 Citations
3,116 Views
18 Pages

Testing of Exchange-Correlation Functionals of DFT for a Reliable Description of the Electron Density Distribution in Organic Molecules

  • Małgorzata Domagała,
  • Mirosław Jabłoński,
  • Alina T. Dubis,
  • Manfred Zabel,
  • Arno Pfitzner and
  • Marcin Palusiak

25 November 2022

Researchers carrying out calculations using the DFT method face the problem of the correct choice of the exchange-correlation functional to describe the quantities they are interested in. This article deals with benchmark calculations aimed at testin...

  • Article
  • Open Access
3 Citations
3,437 Views
14 Pages

Benchmarking the Fluxional Processes of Organometallic Piano-Stool Complexes

  • Nathan C. Frey,
  • Eric Van Dornshuld and
  • Charles Edwin Webster

16 April 2021

The correlation consistent Composite Approach for transition metals (ccCA-TM) and density functional theory (DFT) computations have been applied to investigate the fluxional mechanisms of cyclooctatetraene tricarbonyl chromium ((COT)Cr(CO)3) and 1,3,...

  • Article
  • Open Access
1 Citations
1,342 Views
20 Pages

The one-dimensional (1D) Sb(III)-based organic–inorganic hybrid perovskite (AImd)21[SbI5] (AImd = 1-allylimidazolium) crystallizes in the orthorhombic, centrosymmetric space group Pnma. The structure consists of corner-sharing [SbI6] oct...

  • Article
  • Open Access
5 Citations
3,142 Views
18 Pages

8 September 2022

Highly unsaturated chain molecules are interesting due to their potential application as nanowires and occurrence in interstellar space. Here, we focus on predicting the electronic spectra of polyynic nitriles HC2m+1N (m = 0–13) and dinitriles...

  • Article
  • Open Access
7 Citations
4,059 Views
16 Pages

A Benchmark Protocol for DFT Approaches and Data-Driven Models for Halide-Water Clusters

  • Raúl Rodríguez-Segundo,
  • Daniel J. Arismendi-Arrieta and
  • Rita Prosmiti

Dissolved ions in aqueous media are ubiquitous in many physicochemical processes, with a direct impact on research fields, such as chemistry, climate, biology, and industry. Ions play a crucial role in the structure of the surrounding network of wate...

  • Editorial
  • Open Access
2 Citations
4,812 Views
5 Pages

The properties of many materials at the atomic scale depend on the electronic structure, which requires a quantum mechanical treatment. The most widely used approach to make such a treatment feasible is density functional theory (DFT), the advances i...

  • Article
  • Open Access
4 Citations
5,206 Views
15 Pages

2 November 2022

Soot molecules are hazardous compounds threatening human health. Computational chemistry provides efficient tools for studying them. However, accurate quantum chemistry calculation is costly for the simulation of large-size soot molecules and high-th...

  • Article
  • Open Access
1 Citations
2,739 Views
13 Pages

Benchmarking First-Principles Reaction Equilibrium Composition Prediction

  • Esteban A. Marques,
  • Stefan De Gendt,
  • Geoffrey Pourtois and
  • Michiel J. van Setten

22 April 2023

The availability of thermochemical properties allows for the prediction of the equilibrium compositions of chemical reactions. The accurate prediction of these can be crucial for the design of new chemical synthesis routes. However, for new processes...

  • Article
  • Open Access
47 Citations
12,238 Views
15 Pages

25 February 2003

The spin–spin coupling constants in ethane, methylamine, and methanol have been calculated using density-functional theory (DFT), coupled-cluster singlesand-doubles (CCSD) theory, and multiconfigurational self-consistent field (MCSCF) theory so as to...

  • Review
  • Open Access
29 Citations
7,504 Views
12 Pages

We review the first successes and failures of a “new wave” of quantum chemistry-based approaches to the treatment of protein/ligand interactions. These approaches share the use of “enhanced”, dispersion (D), and/or hydrogen-bond (H) corrected density...

  • Article
  • Open Access
10 Citations
4,755 Views
16 Pages

The understanding of the excited-state properties of electron donors, acceptors and their interfaces in organic optoelectronic devices is a fundamental issue for their performance optimization. In order to obtain a balanced description of the differe...

  • Article
  • Open Access
1 Citations
1,266 Views
10 Pages

The electronic and phonon bands of Skaergaardite are investigated using density functional theory (DFT) as implemented in Quantum ESPRESSO. Skaergaardite is a copper palladium mineral (CuPd) found in the Skaergaard intrusion with a CsCl-type (B2) str...

  • Article
  • Open Access
1 Citations
1,632 Views
18 Pages

24 October 2025

As the complexity of Very-Large-Scale Integration (VLSI) circuits escalates, Design-for-Test (DFT) faces significant challenges. Traditional script-based automation flows are increasingly complex and present a high technical barrier for non-specialis...

  • Article
  • Open Access
11 Citations
7,186 Views
23 Pages

Spin Orbit Coupling in Orthogonal Charge Transfer States: (TD-)DFT of Pyrene—Dimethylaniline

  • Shivan Bissesar,
  • Davita M. E. van Raamsdonk,
  • Dáire J. Gibbons and
  • René M. Williams

28 January 2022

The conformational dependence of the matrix element for spin–orbit coupling and of the electronic coupling for charge separation are determined for an electron donor–acceptor system containing a pyrene acceptor and a dimethylaniline donor...

  • Article
  • Open Access
28 Citations
5,373 Views
10 Pages

Reversible Protonic Doping in Poly(3,4-Ethylenedioxythiophene)

  • Shuzhong He,
  • Masakazu Mukaida,
  • Kazuhiro Kirihara,
  • Lingyun Lyu and
  • Qingshuo Wei

25 September 2018

In this study, poly(3,4-ethylenedioxythiophene), a benchmark-conducting polymer, was doped by protons. The doping and de-doping processes, using protonic acid and a base, were fully reversible. We predicted possible doping sites along the polymer cha...

  • Article
  • Open Access
10 Citations
4,883 Views
18 Pages

Density functional theory (DFT) is used extensively for the first-principles calculation of hyperfine coupling constants in both main-group and transition metal systems. As with many other properties, the performance of DFT for hyperfine coupling con...

  • Article
  • Open Access
3 Citations
3,898 Views
18 Pages

22 December 2021

Aromatic hydrocarbons with fused benzene rings and regular triangular shapes, called n-triangulenes according to the number of rings on one edge, form groundstates with n-1 unpaired spins because of topological reasons. Here, we focus on methodologic...

  • Article
  • Open Access
9 Citations
3,451 Views
20 Pages

Data-Driven and Multiscale Modeling of DNA-Templated Dye Aggregates

  • Austin Biaggne,
  • Lawrence Spear,
  • German Barcenas,
  • Maia Ketteridge,
  • Young C. Kim,
  • Joseph S. Melinger,
  • William B. Knowlton,
  • Bernard Yurke and
  • Lan Li

Dye aggregates are of interest for excitonic applications, including biomedical imaging, organic photovoltaics, and quantum information systems. Dyes with large transition dipole moments (μ) are necessary to optimize coupling within dye aggregates...

  • Article
  • Open Access
13 Citations
4,372 Views
20 Pages

GPU-Enhanced DFTB Metadynamics for Efficiently Predicting Free Energies of Biochemical Systems

  • Anshuman Kumar,
  • Pablo R. Arantes,
  • Aakash Saha,
  • Giulia Palermo and
  • Bryan M. Wong

28 January 2023

Metadynamics calculations of large chemical systems with ab initio methods are computationally prohibitive due to the extensive sampling required to simulate the large degrees of freedom in these systems. To address this computational bottleneck, we...

  • Article
  • Open Access
1 Citations
1,427 Views
26 Pages

Structural and Spectroscopic Properties of Magnolol and Honokiol–Experimental and Theoretical Studies

  • Jacek Kujawski,
  • Beata Drabińska,
  • Katarzyna Dettlaff,
  • Marcin Skotnicki,
  • Agata Olszewska,
  • Tomasz Ratajczak,
  • Marianna Napierała,
  • Marcin K. Chmielewski,
  • Milena Kasprzak and
  • Maciej Stawny
  • + 2 authors

This study presents an integrated experimental and theoretical investigation of two pharmacologically significant neolignans—magnolol and honokiol—with the aim of characterizing their structural and spectroscopic properties in detail. Exp...

  • Article
  • Open Access
2 Citations
2,849 Views
17 Pages

Excited States Computation of Models of Phenylalanine Protein Chains: TD-DFT and Composite CC2/TD-DFT Protocols

  • Marine Lebel,
  • Thibaut Very,
  • Eric Gloaguen,
  • Benjamin Tardivel,
  • Michel Mons and
  • Valérie Brenner

The present benchmark calculations testify to the validity of time-dependent density functional theory (TD-DFT) when exploring the low-lying excited states potential energy surfaces of models of phenylalanine protein chains. Among three functionals s...

  • Article
  • Open Access
208 Views
17 Pages

Structure-Related Properties in AlP Nanoparticles Across One- and Two-Dimensional Architectures

  • Fotios I. Michos,
  • Christina Papaspiropoulou,
  • Nikos Aravantinos-Zafiris and
  • Michail M. Sigalas

21 January 2026

A systematic density functional theory (DFT) and time-dependent DFT (TD-DFT) investigation of aluminum phosphide (AlxPx) nanoparticles with diverse dimensionalities and geometries is presented. Starting from a cubic-like Al4P4 building block, a serie...

  • Article
  • Open Access
18 Citations
3,513 Views
19 Pages

In this study, we report the synthesis of a new organic–inorganic molecular salt of the clinically used antifungal drug fluconazole, (H2Fluconazole).SnCl6.2H2O. By detailed investigation and analysis of its structural properties, we show that t...

  • Article
  • Open Access
42 Citations
9,596 Views
12 Pages

The electronic absorption spectra, ground-state geometries and electronic structures of symmetric and asymmetric squaraine dyes (SQD1–SQD4) were investigated using density functional theory (DFT) and time-dependent (TD-DFT) density functional theory...

  • Article
  • Open Access
2,057 Views
12 Pages

11 September 2025

Molecular geometry, infrared (IR) vibrational frequencies, and ultraviolet–visible (UV-Vis) electronic absorption spectra of the trivalent iron tris(acetylacetonate) complex, Fe(III)(acac)3, were computed using hybrid meta-generalized gradient...

  • Article
  • Open Access
3,810 Views
14 Pages

The lowest-energy isomer of C 2 Si 2 H 4 is determined by high-accuracy ab initio calculations to be the bridged four-membered ring 1,2-didehydro-1,3-disilabicyclo[1.1.0]butane (1), contrary to prior theoretical and experimental...

  • Article
  • Open Access
10 Citations
3,766 Views
18 Pages

Performance Enhancement of APW+lo Calculations by Simplest Separation of Concerns

  • Long Zhang,
  • Anton Kozhevnikov,
  • Thomas Schulthess,
  • Hai-Ping Cheng and
  • Samuel B. Trickey

Full-potential linearized augmented plane wave (LAPW) and APW plus local orbital (APW+lo) codes differ widely in both their user interfaces and in capabilities for calculations and analysis beyond their common central task of all-electron solution of...

  • Article
  • Open Access
28 Citations
6,026 Views
21 Pages

Cyanobacteriochromes are compact and spectrally diverse photoreceptor proteins that are promising candidates for biotechnological applications. Computational studies can contribute to an understanding at a molecular level of their wide spectral tunin...

  • Article
  • Open Access
23 Citations
7,031 Views
17 Pages

10 December 2019

Crystal structure prediction is based on the assumption that the most thermodynamically stable structure will crystallize first. The existence of other structures such as polymorphs or from counterenantiomers requires an accurate calculation of the e...

  • Article
  • Open Access
3 Citations
5,339 Views
12 Pages

We assess the feasibility of efficiently calculating accurate thermodynamic properties of (SiO2)n·(H2O)m nanoclusters, using classical interatomic forcefields (FFs). Specifically, we use a recently parameterized FF for hydroxylated bulk silica system...

  • Article
  • Open Access
38 Citations
4,190 Views
22 Pages

20 August 2021

Polyphenolic compounds are now widely studied using computational chemistry approaches, the most popular of which is Density Functional Theory. To ease this process, it is critical to identify the optimal level of theory in terms of both accuracy and...

  • Article
  • Open Access
8 Citations
4,126 Views
16 Pages

Hydrogen atom abstraction from propargyl C-H sites of alkynes plays a critical role in determining the reactivity of alkyne molecules and understanding the formation of soot precursors. This work reports a systematic theoretical study on the reaction...

  • Article
  • Open Access
41 Citations
5,104 Views
12 Pages

30 January 2019

Vibrational modes of pyrazinamide (PZA), 3-hydroxybenzoic acid (3-hBA), and their cocrystal were characterized using terahertz time-domain (THz-TDS) and Raman vibrational spectroscopic techniques. In experimental THz spectra, the cocrystal has charac...

  • Article
  • Open Access
2 Citations
2,407 Views
38 Pages

5 September 2024

This study explores the inhibitory potential of the flavonoids resokaempferol and tectochrysin against both wild-type and H1047R mutant forms of PI3Kα, aiming to expand the repertoire of targeted cancer therapies. Employing an array of computat...

  • Article
  • Open Access
6 Citations
5,132 Views
25 Pages

Real-Time Object Tracking via Adaptive Correlation Filters

  • Chenjie Du,
  • Mengyang Lan,
  • Mingyu Gao,
  • Zhekang Dong,
  • Haibin Yu and
  • Zhiwei He

24 July 2020

Although correlation filter-based trackers (CFTs) have made great achievements on both robustness and accuracy, the performance of trackers can still be improved, because most of the existing trackers use either a sole filter template or fixed featur...

  • Article
  • Open Access
1,790 Views
16 Pages

Organic Dye Photodegradation Using Niobium-Alkali Perovskite Photocatalysts: The Effect of the Alkali

  • Mirtha Z. L. L. Ribeiro,
  • Igor F. Gomes,
  • Edher Z. Herrera,
  • Alexandre Mello,
  • Marília O. Guimarães,
  • Patrícia A. Carneiro,
  • Débora C. M. Rodrigues,
  • Wanderlã L. Scopel,
  • Rodrigo G. Amorim and
  • Mauro C. Ribeiro

This study combines experimental and density functional theory (DFT) to evaluate the influence of alkaline cation characteristics on the electronic structure and photodegradation efficacy of organic dyes in MNbO3 (M = Na, K) perovskites. The X-ray Ph...

  • Article
  • Open Access
4 Citations
5,517 Views
19 Pages

1 January 2024

Backpack computers require powerful, intelligent computing capabilities for field wearables while taking energy consumption into careful consideration. A recommended solution for this demand is the CPU + NPU-based SoC. In many wearable intelligence a...

  • Article
  • Open Access
3 Citations
2,527 Views
15 Pages

Accurate estimates of intermolecular interaction energy, ΔE, are crucial for modeling the properties of organic electronic materials and many other systems. For a diverse set of 50 dimers comprising up to 50 atoms (Set50-50, with 7 of its membe...

  • Article
  • Open Access
1,810 Views
19 Pages

UAV Tracking via Saliency-Aware and Spatial–Temporal Regularization Correlation Filter Learning

  • Liqiang Liu,
  • Tiantian Feng,
  • Yanfang Fu,
  • Lingling Yang,
  • Dongmei Cai and
  • Zijian Cao

20 August 2024

Due to their great balance between excellent performance and high efficiency, discriminative correlation filter (DCF) tracking methods for unmanned aerial vehicles (UAVs) have gained much attention. Due to these correlations being capable of being ef...

  • Article
  • Open Access
4 Citations
2,837 Views
15 Pages

16 December 2021

Experimental researchers have found that the organic solar cell (OSC) based on DRCN5T (an oligothiophene) possesses excellent power conversion efficiency (PCE) of 10.1%. However, to date, there have been few studies about halogenation of DRCN5T, and...

  • Article
  • Open Access
1 Citations
3,928 Views
19 Pages

Accurate Deep Potential Model of Temperature-Dependent Elastic Constants for Phosphorus-Doped Silicon

  • Miao Gao,
  • Xiaorui Bie,
  • Yi Wang,
  • Yuhang Li,
  • Zhaoyang Zhai,
  • Haoqi Lyu and
  • Xudong Zou

Accurate predictions of elastic properties under varying doping concentrations and temperatures are critical for designing reliable silicon-based micro-/nano-electro-mechanical systems (MEMS/NEMS). Empirical potentials typically lack accuracy for ela...

  • Article
  • Open Access
6 Citations
3,396 Views
17 Pages

DFT-Net: Deep Feature Transformation Based Network for Object Categorization and Part Segmentation in 3-Dimensional Point Clouds

  • Mehak Sheikh,
  • Muhammad Adeel Asghar,
  • Ruqia Bibi,
  • Muhammad Noman Malik,
  • Mohammad Shorfuzzaman,
  • Raja Majid Mehmood and
  • Sun-Hee Kim

25 March 2022

Unlike 2-dimensional (2D) images, direct 3-dimensional (3D) point cloud processing using deep neural network architectures is challenging, mainly due to the lack of explicit neighbor relationships. Many researchers attempt to remedy this by performin...

  • Article
  • Open Access
8 Citations
2,326 Views
14 Pages

Graphene as Nanocarrier for Gold(I)-Monocarbene Complexes: Strength and Nature of Physisorption

  • Cahit Orek,
  • Massimiliano Bartolomei,
  • Cecilia Coletti and
  • Niyazi Bulut

Gold(I) metal complexes are finding increasing applications as therapeutic agents against a variety of diseases. As their potential use as effective metallodrugs is continuously confirmed, the issue of their administration, distribution and delivery...

  • Article
  • Open Access
15 Citations
2,518 Views
17 Pages

27 September 2023

The basis set issue has always been one of the most important factors of accuracy in the quantum chemical calculations of NMR chemical shifts. In a previous paper, we developed new pecS-n (n = 1, 2) basis sets purposed for the calculations of the NMR...

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