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6,709 Results Found

  • Article
  • Open Access
1,324 Views
18 Pages

The Effect of Long-Term Organic Amendments on Soil Organic Carbon Accumulation via Regulating Microbial Traits in a Paddy Soil

  • Jing Ye,
  • Zhaoming Chen,
  • Jinchuan Ma,
  • Junwei Ma,
  • Ping Zou,
  • Wanchun Sun,
  • Feng Wang,
  • Qiaogang Yu and
  • Qiang Wang

6 November 2025

Understanding how organic amendments affect microbial carbon use efficiency (CUE) and necromass C (MNC) is crucial for understanding soil organic C (SOC) formation and accrual in paddy fields, but the underlying mechanisms remain largely unclear. In...

  • Article
  • Open Access
77 Citations
16,860 Views
9 Pages

Soil Microbial Activity in Conventional and Organic Agricultural Systems

  • Ademir S.F. Araújo,
  • Luiz F.C. Leite,
  • Valdinar B. Santos and
  • Romero F.V. Carneiro

4 June 2009

The aim of this study was to evaluate microbial activity in soils under conventional and organic agricultural system management regimes. Soil samples were collected from plots under conventional management (CNV), organic management (ORG) and native v...

  • Article
  • Open Access
1 Citations
526 Views
18 Pages

20 November 2025

Biochar has been demonstrated to be effective in the remediation of heavy metal contamination in soil. However, few studies have examined the impacts of varying proportions of biochar and microbial organic fertilizers on heavy metal adsorption and mi...

  • Review
  • Open Access
14 Citations
5,697 Views
14 Pages

19 November 2022

Microbial keratitis (MK), the infection of the cornea, is a devastating disease and the fifth leading cause of blindness and visual impairment around the world. The overwhelming majority of MK cases are linked to contact lens wear combined with facto...

  • Article
  • Open Access
28 Citations
4,480 Views
15 Pages

Application of Organic Fertilizer Changes the Rhizosphere Microbial Communities of a Gramineous Grass on Qinghai–Tibet Plateau

  • Kun Ma,
  • Yingcheng Wang,
  • Xin Jin,
  • Yangan Zhao,
  • Huilin Yan,
  • Haijuan Zhang,
  • Xueli Zhou,
  • Guangxin Lu and
  • Ye Deng

The effects of organic fertilizer application on the soil microbial community in grassland systems have been extensively studied. However, the effects of organic fertilizers on the structure of rhizosphere microbial communities are still limited. In...

  • Feature Paper
  • Article
  • Open Access
15 Citations
5,427 Views
17 Pages

Microbial Processing and Production of Aquatic Fluorescent Organic Matter in a Model Freshwater System

  • Bethany G. Fox,
  • Robin M.S. Thorn,
  • Alexandre M. Anesio,
  • Timothy Cox,
  • John W. Attridge and
  • Darren M. Reynolds

21 December 2018

Organic matter (OM) has an essential biogeochemical influence along the hydrological continuum and within aquatic ecosystems. Organic matter derived via microbial processes was investigated within a range of model freshwater samples over a 10-day per...

  • Review
  • Open Access
4 Citations
2,888 Views
19 Pages

The gut microbiome has been shown to play a significant role in solid organ transplantation, potentially influencing graft function and patient outcomes. Dysbiosis, characterized by reduced microbial diversity and an increase in pathogenic taxa, has...

  • Review
  • Open Access
31 Citations
9,446 Views
23 Pages

State of the Art on the Microbial Production of Industrially Relevant Organic Acids

  • Raffaella Desirè Di Lorenzo,
  • Immacolata Serra,
  • Danilo Porro and
  • Paola Branduardi

19 February 2022

The industrial relevance of organic acids is high; because of their chemical properties, they can be used as building blocks as well as single-molecule agents with a huge annual market. Organic acid chemical platforms can derive from fossil sources b...

  • Article
  • Open Access
1 Citations
4,711 Views
12 Pages

7 June 2022

Dissolved organic matter (DOM) is the immediate energy, carbon, and other nutrient substrates for microbial growth and, therefore, plays an essential role in agroecosystem biochemical processes. The aim of this study was to elucidate the interrelatio...

  • Article
  • Open Access
6 Citations
3,303 Views
20 Pages

Screening for Hyperthermophilic Electrotrophs for the Microbial Electrosynthesis of Organic Compounds

  • Rabja Maria Popall,
  • Alenica Heussner,
  • Sven Kerzenmacher,
  • Pierre-Pol Liebgott and
  • Guillaume Pillot

Microbial electrosynthesis has recently emerged as a promising technology for the sustainable production of organic acids, bioplastics, or biofuels from electricity and CO2. However, the diversity of catalysts and metabolic pathways is limited to mai...

  • Article
  • Open Access
3 Citations
4,265 Views
18 Pages

27 December 2024

Forest succession is a rapid approach that can be used to increase soil carbon (C) stocks. It is crucial to understand how forest succession influences microbial community assembly and soil carbon fractions to improve carbon sequestration strategies....

  • Review
  • Open Access
597 Views
25 Pages

19 December 2025

Organic pollutants, representing a major category of soil contamination, not only significantly impair soil environmental quality but also threaten human health and agricultural safety through biological accumulation in the food chain. Microbial immo...

  • Article
  • Open Access
6 Citations
2,435 Views
15 Pages

The additions of microbial organic fertilizer (MOF), a microbial inoculant (MI), and quicklime (Q) are considered to be sustainable practices to restore land that has been damaged by continuous cropping of pepper (Capsicum annuum L.). However, the co...

  • Feature Paper
  • Article
  • Open Access
7 Citations
5,072 Views
34 Pages

Microbial Origin of the Organic Matter Preserved in the Cayo Coco Lagoonal Network, Cuba

  • Anthony Bouton,
  • Emmanuelle Vennin,
  • Christophe Thomazo,
  • Olivier Mathieu,
  • Fabien Garcia,
  • Maxime Jaubert and
  • Pieter T. Visscher

7 February 2020

The southern part of the tropical Cayo Coco Island (Cuba) hosts a complex, highly evaporative and marine-fed lagoonal network. In the easternmost lagoon of this network, hypersaline conditions favour the development of complex sedimentary microbial e...

  • Article
  • Open Access
2 Citations
3,155 Views
19 Pages

The Self-Organization of Marine Microbial Networks under Evolutionary and Ecological Processes: Observations and Modeling

  • Zhenghua Liu,
  • Jianjun Wang,
  • Delong Meng,
  • Liangzhi Li,
  • Xueduan Liu,
  • Yabing Gu,
  • Qingyun Yan,
  • Chengying Jiang and
  • Huaqun Yin

13 April 2022

Evolutionary and ecological processes are primary drivers of ecological network constrictions. However, the ways that these processes underpin self-organization and modularity in networks are poorly understood. Here, we performed network analyses to...

  • Review
  • Open Access
9 Citations
2,919 Views
15 Pages

18 February 2025

This review explores the role of surfactants in enhancing or inhibiting the biodegradation of hydrophobic organic compounds (HOCs) by microorganisms. Bioavailability, the extent to which pollutants can be accessed and metabolized by microbes, is a ke...

  • Article
  • Open Access
24 Citations
4,906 Views
13 Pages

25 April 2019

To assess the effects of long-term intensive management on soil carbon cycle and microbial functional diversity, we sampled soil in Chinese hickory (Carya cathayensis Sarg.) stands managed intensively for 5, 10, 15, and 20 years, and in reference Chi...

  • Article
  • Open Access
4 Citations
3,037 Views
15 Pages

11 November 2021

Mould and bacterial contamination releases microbial volatile organic compounds (mVOCs), causing changes in the odour profile of a feed. Bacillus amyloliquefaciens strain H57 (H57) has the potential ability to inhibit microbial growth in animal feeds...

  • Essay
  • Open Access
10 Citations
2,606 Views
16 Pages

Effects of Fertilization and Planting Modes on Soil Organic Carbon and Microbial Community Formation of Tree Seedlings

  • Sutong Fan,
  • Yao Tang,
  • Hongzhi Yang,
  • Yuda Hu,
  • Yelin Zeng,
  • Yonghong Wang,
  • Yunlin Zhao,
  • Xiaoyong Chen,
  • Yaohui Wu and
  • Guangjun Wang

23 September 2024

Biochar and organic fertilizer can significantly increase soil organic carbon (SOC) and promote agricultural production, but it is still unclear how they affect forest SOC after. Here, low-quality plantation soil was subjected to four distinct fertil...

  • Article
  • Open Access
5 Citations
2,396 Views
14 Pages

28 December 2023

Combining rice cultivation and aquaculture into an integrated cropping system is a management approach that enhances the sustainability of rice fields. However, how soil characteristics influence soil microbial community characteristics following imp...

  • Article
  • Open Access
9 Citations
4,146 Views
13 Pages

4 November 2023

The application of organic materials contributes to the sustainable development of agriculture. Increased manure inputs have a fundamental effect on the composition and dynamics of soil organic carbon (SOC). In this study, we conducted a 10-year fiel...

  • Article
  • Open Access
43 Citations
5,619 Views
20 Pages

26 June 2020

Both altitude and vegetation are known to affect the amount and quality of soil organic matter (SOM) and the size and activity of soil microbial biomass. However, when altitude and vegetation changes are combined, it is still unclear which one has a...

  • Article
  • Open Access
1 Citations
1,539 Views
22 Pages

Microbial Metabolic Limitations and Their Relationships with Sediment Organic Carbon Across Lake Salinity Gradient in Tibetan Plateau

  • Weizhen Zhang,
  • Jianjun Wang,
  • Yun Li,
  • Chao Song,
  • Yongqiang Zhou,
  • Xianqiang Meng and
  • Ruirui Chen

Inland lakes, contributing substantially to the global storage of sediment organic carbon (SOC), are subject to marked changes in salinity due to climate warming. The imbalance in the supply of resources, such as carbon, nitrogen, and phosphorus, in...

  • Article
  • Open Access
353 Views
21 Pages

18 December 2025

Altitude-driven environmental changes influence the persistence of soil organic carbon (SOC) via microbial metabolic pathways. However, the degree to which the network robustness of microbial communities directly predicts the persistence of organic c...

  • Review
  • Open Access
26 Citations
10,417 Views
39 Pages

20 March 2025

With industrialization and widespread chemical use, soil organic pollutants have become a major environmental issue. Forest ecosystems, among the most important on Earth, have unique potential for controlling and remediating soil pollution. This arti...

  • Article
  • Open Access
2 Citations
3,276 Views
15 Pages

17 January 2025

Organic matter has a very important function in soil, without which, soil formation processes cannot take place properly. It can be divided and classified based on several aspects; the most general division is between the living and non-living parts...

  • Article
  • Open Access
10 Citations
2,217 Views
15 Pages

18 August 2023

Microbes are crucial components of soil, and their residue carbon plays a significant role in the formation and stabilization of soil carbon pools. However, current research on microbial residue carbon has predominantly focused on surface soils, with...

  • Article
  • Open Access
5 Citations
2,578 Views
15 Pages

29 October 2024

Organic farming encourages soil management practices that can improve soil health and fertility by increasing soil organic matter inputs and system sustainability. This study evaluated the effect of three years of continuous organic farming and inter...

  • Article
  • Open Access
491 Views
28 Pages

6 December 2025

Continuous cropping affects soil health, microbial diversity, and organic matter dynamics, but its long-term impacts on soils under Aralia continentalis Kitag. (a medicinally important Northeast China-native plant) remain unclear. This study evaluate...

  • Article
  • Open Access
5 Citations
2,257 Views
19 Pages

Silage maize is vital to livestock development in northern China, but intensive chemical fertilization has led to soil degradation and reduced productivity. Bio-organic fertilizers offer a sustainable alternative, though their effects on soil multifu...

  • Article
  • Open Access
54 Citations
7,280 Views
20 Pages

Organic fertilizer is a major carrier that stores and transmits antibiotic resistance genes (ARGs). In the environment, due to the application of organic fertilizers in agriculture, the increasing diversity and abundance of ARGs poses a potential thr...

  • Article
  • Open Access
2 Citations
2,906 Views
18 Pages

11 June 2025

The integration of manure and straw substantially affects soil organic carbon (SOC) dynamics, transformation, and long-term stabilization in agricultural systems. Dissolved organic carbon (DOC), particulate organic carbon (POC), and mineral-associate...

  • Article
  • Open Access
50 Citations
4,568 Views
16 Pages

Water Level Has Higher Influence on Soil Organic Carbon and Microbial Community in Poyang Lake Wetland Than Vegetation Type

  • Qiong Ren,
  • Jihong Yuan,
  • Jinping Wang,
  • Xin Liu,
  • Shilin Ma,
  • Liyin Zhou,
  • Lujun Miao and
  • Jinchi Zhang

Although microorganisms play a key role in the carbon cycle of the Poyang Lake wetland, the relationship between soil microbial community structure and organic carbon characteristics is unknown. Herein, high-throughput sequencing technology was used...

  • Review
  • Open Access
23 Citations
12,579 Views
18 Pages

Chlamydomonas reinhardtii, a Reference Organism to Study Algal–Microbial Interactions: Why Can’t They Be Friends?

  • Victoria Calatrava,
  • Manuel Tejada-Jimenez,
  • Emanuel Sanz-Luque,
  • Emilio Fernandez,
  • Aurora Galvan and
  • Angel Llamas

9 February 2023

The stability and harmony of ecological niches rely on intricate interactions between their members. During evolution, organisms have developed the ability to thrive in different environments, taking advantage of each other. Among these organisms, mi...

  • Article
  • Open Access
763 Views
16 Pages

30 October 2025

This study investigates how different vegetation types influence the molecular structure and abundance of soil organic carbon (SOC), as well as their influence on microbial metabolic pathways and community composition. Soil samples were collected fro...

  • Article
  • Open Access
3 Citations
1,939 Views
20 Pages

15 November 2022

In this study, Irisensata Thunb grass (ITG) was used as a biomass carbon resource to prepare biochars for the first time. After microbial treatment, the obtained microbial-treated ITG (MITG) was activated by using a mixed base as an activator for pre...

  • Article
  • Open Access
5 Citations
4,202 Views
15 Pages

14 June 2023

Primary forest conversion greatly influences soil organic carbon (SOC) sequestration. However, our understanding of how primary forest conversion affects SOC fractions and chemical component evenness remains limited. We examined how primary forest co...

  • Article
  • Open Access
3 Citations
1,820 Views
19 Pages

Increased application of organic fertilizer is an effective measure to improve greenhouse soil quality. However, prolonged and intensive application of organic manure has caused nutrient and certain heavy metal accumulation in greenhouse soil. Theref...

  • Article
  • Open Access
6 Citations
2,509 Views
14 Pages

7 November 2023

Understanding soil organic carbon (SOC) at the aggregate level is crucial for soil health in secondary-salinized greenhouse development. Nevertheless, the specific patterns and contributions of ion content and microbial communities on SOC density fra...

  • Article
  • Open Access
1 Citations
758 Views
19 Pages

Long-Term Nitrogen Addition Promotes Microbial Mineralization of Organic Phosphorus Supporting Phosphorus Uptake in Spring Wheat

  • Huaqiang Li,
  • Peng Qi,
  • Xiaodong Yin,
  • Xiaojiao Wang,
  • Run Gan,
  • Jianglong Xue,
  • Yangzi Han,
  • Meixia Lu,
  • Guopeng Liang and
  • Hailiang Li

17 November 2025

The mechanism of microbial-mediated mineralization of organic phosphorus (P) under nitrogen (N) addition in farmland soil is still unclear. To determine the effects of N addition on the composition, structure, and P transformation function of microbi...

  • Article
  • Open Access
9 Citations
5,092 Views
17 Pages

Nitrogen Mineralization and Microbial Biomass Dynamics in Different Tropical Soils Amended with Contrasting Organic Resources

  • Richard Ansong Omari,
  • Dorothea Sonoko Bellingrath-Kimura,
  • Yoshiharu Fujii,
  • Elsie Sarkodee-Addo,
  • Kwame Appiah Sarpong and
  • Yosei Oikawa

The use of location-specific and underutilized organic residues (OR) as soil amendments in small-holder agro-ecosystems is promising. Six ORs (Leucaena leucocephala, Centrosema pubescens, Gliricidia sepium, Pueraria phaseoloides, Azadirachta indica,...

  • Review
  • Open Access
42 Citations
9,758 Views
18 Pages

Microbial Volatile Organic Compounds: An Alternative for Chemical Fertilizers in Sustainable Agriculture Development

  • Murugesan Chandrasekaran,
  • Manivannan Paramasivan and
  • Jesudass Joseph Sahayarayan

Microorganisms are exceptional at producing several volatile substances called microbial volatile organic compounds (mVOCs). The mVOCs allow the microorganism to communicate with other organisms via both inter and intracellular signaling pathways. Re...

  • Article
  • Open Access
1 Citations
916 Views
18 Pages

Synergistic Effects of Different Endophytic Actinobacteria Combined with Organic Fertilizer on Soil Nutrients and Microbial Diversity in Camellia oleifera

  • Yinghe Peng,
  • Kunpeng Cui,
  • Huimin Jian,
  • Zhen Zhang,
  • Longsheng Chen,
  • Yanming Xu,
  • Zhigang Li,
  • Hongsheng Liu,
  • Ting Xu and
  • Rui Wang

Camellia oleifera, a prominent species of edible oil tree in China, depends on improved soil fertility for its sustainable growth. Although the application of bacterial manure has been demonstrated to enhance soil nutrient conditions, the specific co...

  • Review
  • Open Access
53 Citations
8,890 Views
15 Pages

Organic wastes have the potential to be used as soil organic amendments after undergoing a process of stabilization such as composting or as a resource of renewable energy by anaerobic digestion (AD). Both composting and AD are well-known, eco-friend...

  • Article
  • Open Access
318 Views
18 Pages

22 December 2025

Background: Chinese Yellow Earth is a key subtropical agricultural resource in southwestern China; however, its productivity is limited by acidity and poor nutrient retention. This study examined how reduced nitrogen plus organic amendments affect it...

  • Article
  • Open Access
540 Views
15 Pages

In intensive vegetable production systems, long-term reliance on chemical fertilizers often leads to soil degradation and microbial imbalance, highlighting the need for sustainable biotillage strategies. In this study, a long-term field experiment ex...

  • Article
  • Open Access
5 Citations
1,810 Views
24 Pages

12 July 2024

In the southern Xinjiang region of China, developing efficient irrigation and fertilization strategies to enhance resource utilization and prevent desertification is of critical importance. This study focuses on jujubes in Xinjiang, China, and involv...

  • Article
  • Open Access
9 Citations
2,950 Views
19 Pages

Effects of Biochar and Organic Additives on CO2 Emissions and the Microbial Community at Two Water Saturations in Saline–Alkaline Soil

  • Pengfei Zhang,
  • Ziwei Jiang,
  • Xiaodong Wu,
  • Qian Lu,
  • Yue Lin,
  • Yanyu Zhang,
  • Xin Zhang,
  • Yi Liu,
  • Siyu Wang and
  • Shuying Zang

28 June 2023

The nutrient-limiting conditions in saline–alkali soil as well as the salinity and alkalinity stress are successfully alleviated by water management measures and the addition of organic matter. However, the impacts of these two strategies on th...

  • Article
  • Open Access
4 Citations
1,991 Views
24 Pages

The Impact of Organic Fertilizer Substitution on Microbial Community Structure, Greenhouse Gas Emissions, and Enzyme Activity in Soils with Different Cultivation Durations

  • Yanke Guo,
  • Changsheng Zhao,
  • Xuzhen Liu,
  • Yanan Dong,
  • Wei Liu,
  • Qingfeng Chen,
  • Shigang Ding,
  • Jing Zhang,
  • Beibei Guo and
  • Xinguo Gao

16 May 2025

To address soil degradation risk caused by the long-term application of organic and nitrogen fertilizers in facility vegetable fields, this study selected soils with cumulative cultivation durations of 1, 3, 6, and 9 years to investigate the impact o...

  • Article
  • Open Access
8 Citations
3,067 Views
18 Pages

23 November 2023

Climate and detritus influence soil organic carbon (SOC) and labile SOC fractions by affecting soil microbial communities. However, it is not clear how, or to what extent, different detritus treatments affect soil microbial communities and SOC conten...

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