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392 Results Found

  • Article
  • Open Access
15 Citations
5,533 Views
24 Pages

Insights into the Effects of Cancer Associated Mutations at the UPF2 and ATP-Binding Sites of NMD Master Regulator: UPF1

  • Umesh Kalathiya,
  • Monikaben Padariya,
  • Kamila Pawlicka,
  • Chandra S. Verma,
  • Douglas Houston,
  • Ted R. Hupp and
  • Javier Antonio Alfaro

11 November 2019

Nonsense-mediated mRNA decay (NMD) is a quality control mechanism that recognizes post-transcriptionally abnormal transcripts and mediates their degradation. The master regulator of NMD is UPF1, an enzyme with intrinsic ATPase and helicase activities...

  • Article
  • Open Access
52 Citations
9,337 Views
32 Pages

HIV-1 Recruits UPF1 but Excludes UPF2 to Promote Nucleocytoplasmic Export of the Genomic RNA

  • Lara Ajamian,
  • Karen Abel,
  • Shringar Rao,
  • Kishanda Vyboh,
  • Francisco García-de-Gracia,
  • Ricardo Soto-Rifo,
  • Andreas E. Kulozik,
  • Niels H. Gehring and
  • Andrew J. Mouland

20 October 2015

Unspliced, genomic HIV-1 RNA (vRNA) is a component of several ribonucleoprotein complexes (RNP) during the viral replication cycle. In earlier work, we demonstrated that the host upframeshift protein 1 (UPF1), a key factor in nonsense-mediated mRNA d...

  • Review
  • Open Access
18 Citations
8,250 Views
25 Pages

UPF1—From mRNA Degradation to Human Disorders

  • Jacek Staszewski,
  • Natalia Lazarewicz,
  • Julia Konczak,
  • Iwona Migdal and
  • Ewa Maciaszczyk-Dziubinska

27 January 2023

Up-frameshift protein 1 (UPF1) plays the role of a vital controller for transcripts, ready to react in the event of an incorrect translation mechanism. It is well known as one of the key elements involved in mRNA decay pathways and participates in tr...

  • Review
  • Open Access
29 Citations
7,840 Views
34 Pages

UPF1-Mediated RNA Decay—Danse Macabre in a Cloud

  • Daria Lavysh and
  • Gabriele Neu-Yilik

Nonsense-mediated RNA decay (NMD) is the prototype example of a whole family of RNA decay pathways that unfold around a common central effector protein called UPF1. While NMD in yeast appears to be a linear pathway, NMD in higher eukaryotes is a mult...

  • Article
  • Open Access
12 Citations
3,513 Views
12 Pages

UPF1 Inhibits Hepatocellular Carcinoma Growth through DUSP1/p53 Signal Pathway

  • Suman Lee,
  • Yukyung Hwang,
  • Tae Hun Kim,
  • Jaemin Jeong,
  • Dongho Choi and
  • Jungwook Hwang

Human hepatocellular carcinoma (HCC) has a high mortality rate because of the dearth of effective treatments. Multiple studies have shown that overexpression of UPF1, a key nonsense-mediated mRNA decay (NMD) factor, reduces HCC growth through various...

  • Article
  • Open Access
5 Citations
4,100 Views
18 Pages

Identification and Validation of UPF1 as a Novel Prognostic Biomarker in Renal Clear Cell Carcinoma

  • Chun Wu,
  • Hongmu Li,
  • Wuguang Chang,
  • Leqi Zhong,
  • Lin Zhang,
  • Zhesheng Wen and
  • Shijuan Mai

20 November 2022

Background: Up frameshift protein 1 (UPF1) is a key component of nonsense-mediated mRNA decay (NMD) of mRNA containing premature termination codons (PTCs). The dysregulation of UPF1 has been reported in various cancers. However, the expression profil...

  • Review
  • Open Access
24 Citations
6,692 Views
12 Pages

UPF1: From mRNA Surveillance to Protein Quality Control

  • Hyun Jung Hwang,
  • Yeonkyoung Park and
  • Yoon Ki Kim

Selective recognition and removal of faulty transcripts and misfolded polypeptides are crucial for cell viability. In eukaryotic cells, nonsense-mediated mRNA decay (NMD) constitutes an mRNA surveillance pathway for sensing and degrading aberrant tra...

  • Article
  • Open Access
8 Citations
5,158 Views
13 Pages

The Pub1 and Upf1 Proteins Act in Concert to Protect Yeast from Toxicity of the [PSI+] Prion

  • Valery N. Urakov,
  • Olga V. Mitkevich,
  • Alexander A. Dergalev and
  • Michael D. Ter-Avanesyan

20 November 2018

The [PSI+] nonsense-suppressor determinant of Saccharomyces cerevisiae is based on the formation of heritable amyloids of the Sup35 (eRF3) translation termination factor. [PSI+] amyloids have variants differing in amyloid structure and in the strengt...

  • Article
  • Open Access
7 Citations
3,121 Views
17 Pages

25 November 2021

The nonsense-mediated mRNA decay (NMD) pathway rapidly detects and degrades mRNA containing premature termination codons (PTCs). UP-frameshift 1 (UPF1), the master regulator of the NMD process, has two alternatively-spliced isoforms; one carries 353-...

  • Article
  • Open Access
38 Citations
6,617 Views
17 Pages

31 August 2015

The case of large azimuth misalignment angles in a strapdown inertial navigation system (SINS) is analyzed, and a method of using the adaptive UPF for the initial alignment is proposed. The filter is based on the idea of a strong tracking filter; thr...

  • Article
  • Open Access
4 Citations
4,406 Views
14 Pages

16 May 2022

The Universal Peace Federation or UPF is a United Nations-affiliated NGO launched in 2005 by the late Mun Sŏn-myŏng, self-proclaimed Messiah and founder of the South Korean Unification Movement. Mun considered the UPF as the pinnacle of Uni...

  • Article
  • Open Access
7 Citations
5,429 Views
21 Pages

Different studies demonstrate that urban and peri-urban agriculture (UPA) operate in so-called alternative food networks (AFNs). However, very little is known about UPA’s relational business models. Therefore, this paper investigates how the urban an...

  • Article
  • Open Access
3 Citations
2,928 Views
16 Pages

mRNAs containing premature stop codons are responsible for various genetic diseases as well as cancers. The truncated proteins synthesized from these aberrant mRNAs are seldom detected due to the nonsense-mediated mRNA decay (NMD) pathway. Such a sur...

  • Article
  • Open Access
2 Citations
2,286 Views
12 Pages

Increased oxidative stress (OS) and systemic inflammation are key players in the pathophysiology of chronic obstructive pulmonary disease (COPD). We aimed to clarify the effects of synthetic glutathione (GSH) analogue peptides UPF1 and UPF17 on the m...

  • Article
  • Open Access
7 Citations
4,816 Views
22 Pages

(Phospho)proteomic Profiling of Microsatellite Unstable CRC Cells Reveals Alterations in Nuclear Signaling and Cholesterol Metabolism Caused by Frameshift Mutation of NMD Regulator UPF3A

  • Malwina Michalak,
  • Eva-Maria Katzenmaier,
  • Nina Roeckel,
  • Stefan M. Woerner,
  • Vera Fuchs,
  • Uwe Warnken,
  • Yan P. Yuan,
  • Peer Bork,
  • Gabriele Neu-Yilik and
  • Johannes Gebert
  • + 4 authors

DNA mismatch repair-deficient colorectal cancers (CRCs) accumulate numerous frameshift mutations at repetitive sequences recognized as microsatellite instability (MSI). When coding mononucleotide repeats (cMNRs) are affected, tumors accumulate frames...

  • Article
  • Open Access
9 Citations
7,593 Views
19 Pages

Run-Time Adaptive In-Kernel BPF/XDP Solution for 5G UPF

  • Thiago A. Navarro do Amaral,
  • Raphael V. Rosa,
  • David F. Cruz Moura and
  • Christian Esteve Rothenberg

Flexibility is considered a key feature of 5G softwarization to deliver a timely response to changes in network requirements that may be caused by traffic variation, user mobility, dynamic network function chains, slice lifecycle management operation...

  • Article
  • Open Access
4 Citations
4,103 Views
22 Pages

4 October 2022

The catenary cable element has more advantages than other nonlinear truss elements but is less used in commercial programs. In this paper, the initial geometric configuration of the element is solved iteratively by the dichotomous method. Then the Up...

  • Communication
  • Open Access
16 Citations
5,985 Views
9 Pages

Consumer Awareness, Perceptions and Avoidance of Ultra-Processed Foods: A Study of UK Adults in 2024

  • Eric Robinson,
  • Jenna R. Cummings,
  • Thomas Gough,
  • Andrew Jones and
  • Rebecca Evans

23 July 2024

Background: Ultra-processed food (UPF) is currently not included in most countries’ dietary guidance. However, there may be growing public interest and consumer avoidance of UPF due to media reporting of studies on the negative health outcomes...

  • Review
  • Open Access
31 Citations
14,286 Views
33 Pages

1 June 2024

Ultra-processed foods (UPFs) are foods that are industrially processed and are often pre-packaged, convenient, energy-dense, and nutrient-poor. UPFs are widespread in the current Western diet and their proposed contribution to non-communicable diseas...

  • Review
  • Open Access
50 Citations
36,900 Views
20 Pages

The Detrimental Impact of Ultra-Processed Foods on the Human Gut Microbiome and Gut Barrier

  • Debora Rondinella,
  • Pauline Celine Raoul,
  • Eleonora Valeriani,
  • Irene Venturini,
  • Marco Cintoni,
  • Andrea Severino,
  • Francesca Sofia Galli,
  • Vincenzina Mora,
  • Maria Cristina Mele and
  • Gianluca Ianiro
  • + 3 authors

28 February 2025

Ultra-processed foods (UPFs) have become a widely consumed food category in modern diets. However, their impact on gut health is raising increasing concerns. This review investigates how UPFs impact the gut microbiome and gut barrier, emphasizing gut...

  • Article
  • Open Access
3 Citations
2,764 Views
22 Pages

14 August 2025

Background: Ultra-Processed Foods (UPFs) make up a growing share of older adults’ diets and may contribute to frailty through pro-inflammatory pathways. The objective of this study was to examine the association of UPF intake with frailty devel...

  • Review
  • Open Access
1,817 Views
29 Pages

30 June 2025

Background/Objectives: The nutritional importance of grain-based foods (GBFs) and whole grains (WGs) is underscored by their central position in dietary guidance worldwide. Many jurisdictions recommend consumers increase WG intake because they are as...

  • Article
  • Open Access
16 Citations
5,041 Views
15 Pages

Fucoidan from Undaria pinnatifida Ameliorates Epidermal Barrier Disruption via Keratinocyte Differentiation and CaSR Level Regulation

  • Yu Chen,
  • Xuenan Li,
  • Xiaoshuang Gan,
  • Junmei Qi,
  • Biao Che,
  • Meiling Tai,
  • Shuang Gao,
  • Wengang Zhao,
  • Nuo Xu and
  • Zhenlin Hu

24 November 2019

The epidermal barrier acts as a line of defense against external agents as well as helps to maintain body homeostasis. The calcium concentration gradient across the epidermal barrier is closely related to the proliferation and differentiation of kera...

  • Article
  • Open Access
2,401 Views
22 Pages

Energy and Nutrient Intake Gaps and Socioeconomic Determinants of Ultra-Processed and Less-Processed Foods Consumed in Ethiopia: Evidence from National Food Consumption Survey

  • Kifle Habte Balcha,
  • Stefanie Vandevijvere,
  • Annette van Onselen,
  • Muthulisi Siwela,
  • Masresha Tessema,
  • Nqobile Monate Mkolo,
  • Tibebu Moges,
  • Edith J. M. Feskens,
  • Dejen Tesfaw and
  • Inge D. Brouwer

29 August 2025

Introduction: Consumption of ultra-processed food (UPF) is associated with poor diet quality and a risk for non-communicable diseases (NCDs). This study explores the energy contribution of NOVA foods and the nutrient gaps. Methods: The study sourced...

  • Article
  • Open Access
4 Citations
4,363 Views
15 Pages

The G3BP1-UPF1-Associated Long Non-Coding RNA CALA Regulates RNA Turnover in the Cytoplasm

  • Luisa Kirchhof,
  • Youssef Fouani,
  • Andrea Knau,
  • Galip S. Aslan,
  • Andreas W. Heumüller,
  • Ilka Wittig,
  • Michaela Müller-McNicoll,
  • Stefanie Dimmeler and
  • Nicolas Jaé

Besides transcription, RNA decay accounts for a large proportion of regulated gene expression and is paramount for cellular functions. Classical RNA surveillance pathways, like nonsense-mediated decay (NMD), are also implicated in the turnover of non...

  • Article
  • Open Access
9 Citations
6,511 Views
17 Pages

20 December 2013

In this paper, the ultraviolet protection factor (UPF) of plain knitted fabrics made from 20Ne cotton yarns, Coolmax yarn and their combinations in wet, relaxed and stretched states were studied. According to the fiber composition, fabric samples are...

  • Article
  • Open Access
7 Citations
3,678 Views
22 Pages

Elucidation of the Mechanism of Host NMD Suppression by HTLV-1 Rex: Dissection of Rex to Identify the NMD Inhibitory Domain

  • Kazumi Nakano,
  • Nobuaki Karasawa,
  • Masaaki Hashizume,
  • Yuetsu Tanaka,
  • Takeo Ohsugi,
  • Kaoru Uchimaru and
  • Toshiki Watanabe

9 February 2022

The human retrovirus human T-cell leukemia virus type I (HTLV-1) infects human T cells by vertical transmission from mother to child through breast milk or horizontal transmission through blood transfusion or sexual contact. Approximately 5% of infec...

  • Article
  • Open Access
5 Citations
3,439 Views
18 Pages

Latency Reduction in Vehicular Sensing Applications by Dynamic 5G User Plane Function Allocation with Session Continuity

  • Pablo Fondo-Ferreiro,
  • David Candal-Ventureira,
  • Francisco Javier González-Castaño and
  • Felipe Gil-Castiñeira

21 November 2021

Vehicle automation is driving the integration of advanced sensors and new applications that demand high-quality information, such as collaborative sensing for enhanced situational awareness. In this work, we considered a vehicular sensing scenario su...

  • Review
  • Open Access
52 Citations
19,966 Views
16 Pages

Ultra-Processed Food Intake and Increased Risk of Obesity: A Narrative Review

  • Antonietta Monda,
  • Maria Ida de Stefano,
  • Ines Villano,
  • Salvatore Allocca,
  • Maria Casillo,
  • Antonietta Messina,
  • Vincenzo Monda,
  • Fiorenzo Moscatelli,
  • Anna Dipace and
  • Rita Polito
  • + 7 authors

21 August 2024

The prevalence of obesity has become a global health concern, with significant impacts on quality of life and mortality rates. Recent research has highlighted the role of ultra-processed foods (UPFs) in driving the obesity epidemic. UPFs undergo exte...

  • Article
  • Open Access
20 Citations
6,734 Views
15 Pages

31 October 2013

In this paper, the ultraviolet protection factor (UPF) of weft knitted fabrics made from 20Ne cotton yarn, Coolmax yarn and their blends in dry, relaxed and stretched states were studied. According to the fibre composition, samples were divided into...

  • Article
  • Open Access
3,877 Views
11 Pages

Assessing the Consumption of Ultra-Processed Foods in People with Diabetes: Is a Specific NOVA Questionnaire Always Necessary?

  • Giovanna D’Abbronzo,
  • Cinzia Quaglia,
  • Giuseppe Di Costanzo,
  • Roberta Testa,
  • Rosalba Giacco,
  • Gabriele Riccardi,
  • Olga Vaccaro and
  • Marilena Vitale

24 December 2024

Background/Objectives: Despite the accumulating evidence on the detrimental impact of UPFs on health, a common limit of the available studies concerns the instruments used to collect information about the consumption of processed foods. Recently, a s...

  • Article
  • Open Access
32 Citations
12,965 Views
19 Pages

Slip versus Slop: A Head-to-Head Comparison of UV-Protective Clothing to Sunscreen

  • Elizabeth G. Berry,
  • Joshua Bezecny,
  • Michael Acton,
  • Taylor P. Sulmonetti,
  • David M. Anderson,
  • Haskell W. Beckham,
  • Rebecca A. Durr,
  • Takahiro Chiba,
  • Jennifer Beem and
  • Sancy A. Leachman
  • + 3 authors

21 January 2022

Ultraviolet radiation (UVR) exposure is the most important modifiable risk factor for skin cancer development. Although sunscreen and sun-protective clothing are essential tools to minimize UVR exposure, few studies have compared the two modalities h...

  • Article
  • Open Access
38 Citations
8,866 Views
18 Pages

25 March 2015

Integration of Global Positioning System (GPS) and Inertial Navigation System (INS) integrated system involves nonlinear motion state and measurement models. However, the extended Kalman filter (EKF) is commonly used as the estimation filter, which m...

  • Article
  • Open Access
2 Citations
1,503 Views
17 Pages

1 November 2024

To address the limitations in the prediction accuracy of the remaining useful life (RUL) of lithium-ion batteries, stemming from model accuracy, particle degradation, and insufficient diversity in the particle filter (PF) algorithm, this paper propos...

  • Abstract
  • Open Access
1,724 Views
2 Pages

Higher Ultra-Processed Food (UPF) Intake Is Associated with Poorer Overall Dietary Quality Compared to Lower UPF Intake: Results from a Pilot Study

  • Marios Skordis,
  • Maria Ioannidou,
  • Dionisia Sarakini,
  • Tereza Santeladze,
  • Afroditi Korogiannaki and
  • Evaggelia Fappa

Background and objectives: Numerous studies link ultra-processed food (UPF) intake to adverse health outcomes. However, data on the relationship between UPF intake and overall dietary quality are scarce. Therefore, the present analysis aimed to explo...

  • Article
  • Open Access
52 Citations
5,194 Views
14 Pages

A Comparative Study of Three Improved Algorithms Based on Particle Filter Algorithms in SOC Estimation of Lithium Ion Batteries

  • Bizhong Xia,
  • Zhen Sun,
  • Ruifeng Zhang,
  • Deyu Cui,
  • Zizhou Lao,
  • Wei Wang,
  • Wei Sun,
  • Yongzhi Lai and
  • Mingwang Wang

4 August 2017

The state of charge (SOC) is an important parameter for batteries, especially those for electric vehicles. Since SOC cannot be obtained directly by measurement, SOC estimation methods are required. In this paper, three model-based methods, including...

  • Article
  • Open Access
6 Citations
3,378 Views
14 Pages

The Influence of Iron Ions on Optical Brighteners and Their Application to Cotton Fabrics

  • Tihana Dekanić,
  • Tanja Pušić,
  • Ivo Soljačić,
  • Branka Vojnović and
  • Julija Volmajer Valh

1 September 2021

The influence of iron ions at concentrations of 0.2, 0.5, and 1.0 g/L on optical brighteners of the groups stilbene and biphenyl in solution and on cotton fabric was investigated. Both groups of optical brighteners are intended for detergent formulat...

  • Article
  • Open Access
1 Citations
2,850 Views
17 Pages

31 October 2024

Para-aramid fibers, known for their remarkable strength and thermal stability, are frequently employed in protective textiles for military and aerospace applications. However, continuous exposure to ultraviolet (UV) radiation can damage their protect...

  • Article
  • Open Access
1,380 Views
17 Pages

Alternative Performance Indices-Based Control Technique for a Unity Power Factor Three-Phase Rectifier

  • Shaoru Zhang,
  • Xiaoyan Liu,
  • Yikun Jia,
  • Pingjun Wang,
  • Jingmin Wang and
  • Jielu Zhang

The implementation of a unity power factor (UPF) three-phase rectifier has the potential to enhance the power factor (PF). However, the PF and total harmonic distortion (THD) experience degradation in low-output regions due to the utilization of a &l...

  • Review
  • Open Access
10 Citations
5,578 Views
17 Pages

How Do Yeast Cells Contend with Prions?

  • Reed B. Wickner,
  • Herman K. Edskes,
  • Moonil Son,
  • Songsong Wu and
  • Madaleine Niznikiewicz

Infectious proteins (prions) include an array of human (mammalian) and yeast amyloid diseases in which a protein or peptide forms a linear β-sheet-rich filament, at least one functional amyloid prion, and two functional infectious proteins unrel...

  • Article
  • Open Access
5 Citations
4,074 Views
13 Pages

8 February 2024

The inclusion of particles in a polymeric substrate to achieve certain properties is a well-known practice. In the case of textile substrates, this practice may deeply affect the structure of the produced yarns, as even a filament with no textile app...

  • Article
  • Open Access
1,403 Views
14 Pages

Influence of Molecular Weight of Anthraquinone Acid Dyes on Color Strength, Migration, and UV Protection of Polyamide 6 Fabrics

  • Nawshin Farzana,
  • Abu Naser Md Ahsanul Haque,
  • Shamima Akter Smriti,
  • Abu Sadat Muhammad Sayem,
  • Fahmida Siddiqa,
  • Md Azharul Islam,
  • Md Nasim and
  • S M Kamrul Hasan

Anthraquinone acid dyes are widely used in dyeing polyamide due to their good exhaustion and brightness. While ionic interactions primarily govern dye–fiber bonding, the molecular weight (Mw) of these dyes can significantly influence migration,...

  • Article
  • Open Access
1,627 Views
23 Pages

Private 5G networks offer exclusive, secure wireless communication with full control deployments for many clients, such as enterprises and campuses. In these networks, edge computing plays a critical role by hosting both application services and the...

  • Article
  • Open Access
501 Views
16 Pages

27 December 2025

Background/Objectives: With the increasing global concern about diet-related diseases associated with the consumption of ultra-processed foods (UPFs), there is an urgent need for practical and standardized tools to evaluate and monitor UPF intake. Th...

  • Article
  • Open Access
2 Citations
1,819 Views
18 Pages

Characterization of the mIF4G Domains in the RNA Surveillance Protein Upf2p

  • Edgardo M. Colón,
  • Luis A. Haddock,
  • Clarivel Lasalde,
  • Qishan Lin,
  • Juan S. Ramírez-Lugo and
  • Carlos I. González

29 December 2023

Thirty percent of all mutations causing human disease generate mRNAs with premature termination codons (PTCs). Recognition and degradation of these PTC-containing mRNAs is carried out by the mechanism known as nonsense-mediated mRNA decay (NMD). Upf2...

  • Article
  • Open Access
7 Citations
3,848 Views
18 Pages

22 August 2023

Protective clothing in gas and oil industries requires high-performance characteristics, with superior anti-static and ultraviolet (UV) protection and good thermal wear comfort in cold weather regions. This study examined the manufacturing and proper...

  • Review
  • Open Access
7 Citations
4,423 Views
20 Pages

Before the establishment of an adaptive immune response, retroviruses can be targeted by several cellular host factors at different stages of the viral replication cycle. This intrinsic immunity relies on a large diversity of antiviral processes. In...

  • Article
  • Open Access
4 Citations
2,240 Views
13 Pages

Upf2-Mediated Nonsense-Mediated Degradation Pathway Involved in Genetic Compensation of TrpA1 Knockout Mutant Silkworm (Bombyx mori)

  • Dong-Yue Wang,
  • Juan Zhu,
  • Yi-Zhong Zhang,
  • Qian-Yi Cui,
  • Shan-Shan Wang,
  • Yang-Wei Ning and
  • Xing-Jia Shen

26 April 2024

Genetic mutations leading to premature termination codons are known to have detrimental effects. Using the Lepidoptera model insect, the silkworm (Bombyx mori), we explored the genetic compensatory response triggered by mutations with premature termi...

  • Article
  • Open Access
914 Views
13 Pages

23 May 2025

The nonsense-mediated mRNA decay (NMD) is extensively involved in physiological, pathological, and stress response processes in humans and plants. However, the NMD in phytopathogenic fungi has not yet been thoroughly investigated. In this study, we i...

  • Review
  • Open Access
1 Citations
5,461 Views
18 Pages

Nonsense-Mediated mRNA Decay: Mechanisms and Recent Implications in Cardiovascular Diseases

  • Fasilat Oluwakemi Hassan,
  • Md Monirul Hoque,
  • Abdul Majid,
  • Joy Olaoluwa Gbadegoye,
  • Amr Raafat and
  • Djamel Lebeche

19 August 2025

This review highlights the emerging functional implications of nonsense-mediated mRNA decay (NMD) in human diseases, with a focus on its therapeutic potential for cardiovascular disease. NMD, conserved from yeast to humans, is involved in apoptosis,...

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