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209 Results Found

  • Article
  • Open Access
45 Citations
9,213 Views
23 Pages

16 November 2015

Spatial records of species are commonly misidentified, which can change the predicted distribution of a species obtained from a species distribution model (SDM). Experiments were undertaken to predict the distribution of real and simulated species us...

  • Article
  • Open Access
6 Citations
6,367 Views
15 Pages

ITS DNA Barcoding Reveals That Halophila stipulacea Still Remains the Only Non-Indigenous Seagrass of the Mediterranean Sea

  • Catalina A. García-Escudero,
  • Costas S. Tsigenopoulos,
  • Vasilis Gerakaris,
  • Alexandros Tsakogiannis and
  • Eugenia T. Apostolaki

22 January 2022

Non-indigenous species (NIS) are one of the major threats to the native marine ecosystems of the Mediterranean Sea. Halophila stipulacea was the only exotic seagrass of the Mediterranean until 2018, when small patches of a species morphologically ide...

  • Article
  • Open Access
1,263 Views
20 Pages

15 October 2025

Accurate identification of deciduous woody species in winter is challenging, and the misidentification can lead to ecological and management damage. This study aims to substantiate a diagnostic system for woody species based on macromorphological bar...

  • Article
  • Open Access
5 Citations
3,806 Views
20 Pages

Investigating Co-occurrence among Look-alike Species: The Case of Three Bears in Northeast India

  • David L. Garshelis,
  • Nishith Dharaiya,
  • Thomas R. Sharp and
  • Karine E. Pigeon

29 August 2022

At the most basic level, the assessment of a species’ status involves knowing where it occurs. Determining the presence of rare species is difficult, and can be further confounded by the presence of a more common look-alike species. We investig...

  • Review
  • Open Access
20 Citations
10,620 Views
14 Pages

24 July 2014

The increasing concern over the continued use of pesticides is pressurising apple growers to look for alternatives to chemical pest control. The re-discovery, and subsequent conservation, of the beneficial predatory mite, Anystis baccarum (Linnaeus)...

  • Article
  • Open Access
11 Citations
5,531 Views
20 Pages

Good Practices in Sponge Natural Product Studies: Revising Vouchers with Isomalabaricane Triterpenes

  • Paco Cárdenas,
  • Jayani Gamage,
  • Chamari M. Hettiarachchi and
  • Sunithi Gunasekera

4 March 2022

Species misidentification in the field of natural products is an acknowledged problem. These errors are especially widespread in sponge studies, albeit rarely assessed and documented. As a case study, we aim to revisit reports of isomalabaricane trit...

  • Article
  • Open Access
20 Citations
5,684 Views
10 Pages

10 April 2022

Invasive infections caused by filamentous fungi constitute a leading cause of morbidity and mortality in immunocompromised patients. Rapid and reliable identification of filamentous fungi is essential for the early initiation of appropriate treatment...

  • Article
  • Open Access
6 Citations
5,292 Views
9 Pages

Elliptic Fourier Analysis in the Study of the Male Genitalia to Discriminate Three Macrolophus Species (Hemiptera: Miridae)

  • A. M. Jauset,
  • E. Edo-Tena,
  • P. M. Parés-Casanova,
  • C. Castañé,
  • N. Agustí and
  • O. Alomar

1 November 2017

Within the genus Macrolophus (Heteroptera: Miridae), the species M. costalis (Fieber), M. melanotoma (Costa) and M. pygmaeus (Rambur) are present in the Mediterranean region on a wide variety of plant species. While M. costalis can easily be separate...

  • Article
  • Open Access
10 Citations
4,451 Views
11 Pages

Molecular Species Delimitation Using COI Barcodes of Mealybugs (Hemiptera: Pseudococcidae) from Coffee Plants in Espírito Santo, Brazil

  • Pablo Viana Oliveira,
  • Alexandre Rosa dos Santos,
  • Emily Lopes Olive,
  • Karolinni Bianchi Britto,
  • Francine Alves Nogueira de Almeida,
  • Vitor Cezar Pacheco da Silva,
  • Carolina Barros Machado,
  • Maurício José Fornazier,
  • José Aires Ventura and
  • Greiciane Gaburro Paneto
  • + 1 author

20 February 2023

Mealybugs are insects belonging to the family Pseudococcidae. This family includes many plant-pest species with similar morphologies, which may lead to errors in mealybug identification and delimitation. In the present study, we employed molecular-sp...

  • Communication
  • Open Access
1 Citations
1,153 Views
10 Pages

9 August 2024

Worldwide, large-scale biodiversity monitoring schemes are developing and involve many non-specialist volunteers. If the opening of schemes to non-specialists allows for the gathering of huge amounts of data, their quality represents a controversial...

  • Article
  • Open Access
6 Citations
4,947 Views
16 Pages

19 April 2022

Due to difficulty in recognition, many true species have been covered under the synonyms of wide-spread species. To justify the identification of a widely distributed species, Sillago sihama from the Bay of Bengal, Bangladesh, an integrated approach...

  • Article
  • Open Access
3 Citations
3,826 Views
10 Pages

Comparative Study of Different Diagnostic Routine Methods for the Identification of Acinetobacter radioresistens

  • Richard Bigge,
  • Boyke Bunk,
  • Wolfram W. Rudolph,
  • Florian Gunzer,
  • Sina M. Coldewey,
  • Thomas Riedel and
  • Percy Schröttner

Recent publications indicate that A. radioresistens can cause infections in humans, even though it is rarely reported in routine diagnostics. However, the fact that it is infrequently detected may be explained by the misidentification of the species...

  • Article
  • Open Access
4 Citations
3,589 Views
16 Pages

Pan-Genome miRNomics in Brachypodium

  • Tugdem Muslu,
  • Sezgi Biyiklioglu-Kaya,
  • Bala Ani Akpinar,
  • Meral Yuce and
  • Hikmet Budak

16 May 2021

Pan-genomes are efficient tools for the identification of conserved and varying genomic sequences within lineages of a species. Investigating genetic variations might lead to the discovery of genes present in a subset of lineages, which might contrib...

  • Article
  • Open Access
5 Citations
2,946 Views
16 Pages

25 August 2023

Accurate species identification is key to conservation and phylogenetic inference. Living plant collections from botanical gardens/arboretum are important resources for the purpose of scientific research, but the proportion of cultivated plant miside...

  • Article
  • Open Access
8 Citations
2,978 Views
15 Pages

The genus Curcuma L. (Zingiberaceae) is highly diverse and often exhibits similar morphological appearances, leading to frequent misidentifications that impact botanical practices, horticultural activities, and conservation efforts. This study addres...

  • Editorial
  • Open Access
12 Citations
5,901 Views
6 Pages

Sugarcane breeding is very difficult and it takes 12 to 14 years to develop a new cultivar for commercial production. This is because sugarcane varieties are highly polyploid, inter-specific hybrids with 100 to 130 chromosomes that may vary across ge...

  • Article
  • Open Access
353 Views
20 Pages

15 December 2025

The systematics of the polychaete family Ampharetidae in Korean waters have been marked by long-standing confusion and potential misidentifications of key species. This study presents a critical systematics re-assessment of Korean ampharetids, based...

  • Feature Paper
  • Review
  • Open Access
800 Views
22 Pages

MiRNAs in Poultry Health and Production: Progress and Challenges

  • Thanh Van Nguyen,
  • Tan Hy Tat and
  • Duy Ngoc Do

7 November 2025

MicroRNAs (miRNAs) are small, non-coding RNA molecules that play crucial roles in the regulation of gene expression. In poultry, miRNAs have emerged as significant regulators of various biological processes, such as growth, development, immune respon...

  • Comment
  • Open Access
2 Citations
947 Views
3 Pages

30 July 2024

Two species in question, Tiltoniceras sp. (Zhang et al., 2024, p. 6, Figure 5A,B,E) and “Hildoceratidae sp.”, belong to the misidentification of ammonites, the conclusion drawn by Zhang et al. (2024) lacks reliable evidence from ammonite...

  • Article
  • Open Access
13 Citations
4,503 Views
9 Pages

External Quality Assessment Evaluating the Ability of Dutch Clinical Microbiological Laboratories to Identify Candida auris

  • Jochem B. Buil,
  • Henrich A. L. van der Lee,
  • Ilse Curfs-Breuker,
  • Paul E. Verweij and
  • Jacques F. Meis

7 October 2019

Background: Candida auris is a yeast that is causing nosocomial outbreaks in healthcare facilities around the world. There is a risk of the misidentification of C. auris with matrix-assisted laser desorption ionization-time of flight mass spectrometr...

  • Brief Report
  • Open Access
8 Citations
3,574 Views
8 Pages

5 October 2022

The characterization of demographic features in natural populations is important to understand recruitment dynamics, mating systems, and propensities for loss of genetic diversity. The accurate identification of sex can be difficult in sexually monom...

  • Article
  • Open Access
2 Citations
2,178 Views
15 Pages

16 May 2023

In plants, phase change from the juvenile stage to maturity involves physiological and anatomical changes, which are initiated and controlled by evolutionary highly conserved microRNAs. This process is of particular significance for the in vitro prop...

  • Article
  • Open Access
1 Citations
1,537 Views
23 Pages

Aristolochia contorta Bunge is an academically and medicinally important plant species. It belongs to the magnoliids, with an uncertain phylogenetic position, and is one of the few plant species lacking a whole-genome duplication (WGD) event after th...

  • Article
  • Open Access
5 Citations
3,148 Views
11 Pages

PlantMirP-Rice: An Efficient Program for Rice Pre-miRNA Prediction

  • Huiyu Zhang,
  • Hua Wang,
  • Yuangen Yao and
  • Ming Yi

18 June 2020

Rice microRNAs (miRNAs) are important post-transcriptional regulation factors and play vital roles in many biological processes, such as growth, development, and stress resistance. Identification of these molecules is the basis of dissecting their re...

  • Article
  • Open Access
28 Citations
7,377 Views
18 Pages

MicroRNA Expression Profiling of Lactating Mammary Gland in Divergent Phenotype Swine Breeds

  • Jing Peng,
  • Jun-Sheng Zhao,
  • Yi-Fei Shen,
  • Hai-Guang Mao and
  • Ning-Ying Xu

8 January 2015

MicroRNA (miRNA) plays a key role in development and specific biological processes, such as cell proliferation, differentiation, and apoptosis. Extensive studies of mammary miRNAs have been performed in different species and tissues. However, little...

  • Article
  • Open Access
7 Citations
2,905 Views
11 Pages

Mycobacterium chimaera Identification Using MALDI-TOF MS Technology: A Practical Approach for the Clinical Microbiology Laboratories

  • Jessica Bagnarino,
  • Daniela Barbarini,
  • Giuseppe Russello,
  • Mariangela Siciliano,
  • Vincenzina Monzillo,
  • Fausto Baldanti and
  • Edoardo Carretto

Mycobacterium chimaera (MC) is an environmental, slowly growing, non-tuberculous mycobacterium (NTM) belonging to Mycobacterium avium complex (MAC), which recently has been linked to severe cardiovascular infections following open heart and vascular...

  • Article
  • Open Access
1 Citations
1,180 Views
20 Pages

30 May 2025

In plants, the transition from the juvenile to adult stage involves physiological and anatomical changes initiated and partially controlled by evolutionarily conserved microRNAs. This process is of particular significance for the successful propagati...

  • Article
  • Open Access
18 Citations
3,553 Views
20 Pages

Root-to-Shoot Long-Distance Mobile miRNAs Identified from Nicotiana Rootstocks

  • Zhuying Deng,
  • Huiyan Wu,
  • Dongyi Li,
  • Luping Li,
  • Zhipeng Wang,
  • Wenya Yuan,
  • Yongzhong Xing,
  • Chengdao Li and
  • Dacheng Liang

26 November 2021

Root-derived mobile signals play critical roles in coordinating a shoot’s response to underground conditions. However, the identification of root-to-shoot long-distance mobile signals has been scant. In this study, we aimed to characterize root...

  • Article
  • Open Access
1 Citations
2,091 Views
18 Pages

Assessing the In Vitro Individual and Combined Effect of Arthrobotrys oligospora and A. musiformis (Orbiliales) Liquid Culture Filtrates against Infective Larvae of the Sheep Blood-Feeding Nematode Haemonchus contortus (Trichostrongylidae)

  • Antonio Colinas-Picazo,
  • Pedro Mendoza-de Gives,
  • Gustavo Pérez-Anzúrez,
  • Enrique Gutiérrez-Medina,
  • Génesis Andrea Bautista-García,
  • Edgar Jesús Delgado-Núñez and
  • Agustín Olmedo-Juárez

Background: Arthrobotrys species are nematophagous fungi that secrete extracellular nematocidal products (ECP). The individual and combined effects of ECP from Arthrobotrys oligospora (Ao) and A. musiformis (Am) growth in liquid media against Haemonc...

  • Article
  • Open Access
1 Citations
1,732 Views
15 Pages

Analysis of the miRNA Transcriptome in Aconitum vilmorinianum and Its Regulation of Diterpenoid Alkaloid Biosynthesis

  • Xing Zhao,
  • Yiguo Li,
  • Jun Shen,
  • Caixia Guo,
  • Jie Li,
  • Mingzhu Chen,
  • Huini Xu and
  • Kunzhi Li

Aconitum vilmorinianum (A. vilmorinianum) is an important medicinal plant in the Aconitum genus that is known for its diterpenoid alkaloids, which exhibit significant pharmacological activity and toxicity, thus making it valuable for both medicinal u...

  • Article
  • Open Access
23 Citations
4,079 Views
14 Pages

28 January 2021

Agricultural high throughput diagnostics need to be fast, accurate and have multiplexing capacity. Metagenomic sequencing is being widely evaluated for plant and animal diagnostics. Bioinformatic analysis of metagenomic sequence data has been a bottl...

  • Review
  • Open Access
18 Citations
8,452 Views
23 Pages

Ecology and Environmental Impact of Myriophyllum heterophyllum, an Aggressive Invader in European Waterways

  • Elisabeth M. Gross,
  • Hélène Groffier,
  • Cécile Pestelard and
  • Andreas Hussner

30 March 2020

The submerged evergreen aquatic plant Myriophyllum heterophyllum is among the worst invasive species in Europe, causing severe problems especially in navigation channels but also lentic systems. This review aims to provide a comprehensive overview an...

  • Article
  • Open Access
3 Citations
1,235 Views
14 Pages

Integrated Analysis of microRNAs and Transcription Factor Targets in Floral Transition of Pleioblastus pygmaeus

  • Wenjing Yao,
  • Peng Shen,
  • Meng Yang,
  • Qianyu Meng,
  • Rui Zhou,
  • Long Li and
  • Shuyan Lin

30 October 2024

Bamboo plants have erratic flowering habits with a long vegetative growth and an uncertain flowering cycle. The process of floral transition has always been one of the hot and intriguing topics in bamboo developmental biology. As master modulators of...

  • Article
  • Open Access
1,452 Views
14 Pages

3 August 2025

We report a case of catheter-associated bloodstream infection caused by a putative novel species in the genus Erwinia, identified using whole-genome sequencing (WGS). A female adolescent receiving long-term home parenteral nutrition via a central ven...

  • Article
  • Open Access
2,072 Views
10 Pages

Epidemiology and Molecular Identification of Dermatophytes: Focus on the Detection of the Emerging Species Trichophyton indotineae in Northern Italy

  • Valentina Lepera,
  • Gabriella Tocci,
  • Giorgia Palladini,
  • Marco Enrico Giovanni Arosio,
  • Claudio Farina,
  • Giuliana Lo Cascio and
  • on behalf of the Medical Mycology Committee (CoSM)—Italian Association of Clinical Microbiology (AMCLI)

Background: Trichophyton indotineae, a new emerging pathogen according to the WHO, is known to cause severe forms of tinea. Given that traditional identification methods rely on morphological characteristics, and the morphological distinctions a...

  • Article
  • Open Access
10 Citations
4,634 Views
14 Pages

Exploring the Impact of Organic Solvent Quality and Unusual Adduct Formation during LC-MS-Based Lipidomic Profiling

  • Tomas Cajka,
  • Jiri Hricko,
  • Lucie Rudl Kulhava,
  • Michaela Paucova,
  • Michaela Novakova,
  • Oliver Fiehn and
  • Ondrej Kuda

22 August 2023

Liquid chromatography–mass spectrometry (LC-MS) is the key technique for analyzing complex lipids in biological samples. Various LC-MS modes are used for lipid separation, including different stationary phases, mobile-phase solvents, and modifi...

  • Article
  • Open Access
19 Citations
3,913 Views
25 Pages

Profiling of the Salt Stress Responsive MicroRNA Landscape of C4 Genetic Model Species Setaria viridis (L.) Beauv

  • Joseph L. Pegler,
  • Duc Quan Nguyen,
  • Christopher P.L. Grof and
  • Andrew L. Eamens

12 June 2020

Setaria viridis has recently emerged as an ideal model species to genetically characterize the C4 monocotyledonous grasses via a molecular modification approach. Soil salinization has become a compelling agricultural problem globally with salinity ad...

  • Article
  • Open Access
2 Citations
3,060 Views
13 Pages

13 November 2021

Microsatellites, or simple sequences repeat (SSRs), are distributed in genes, intergenic regions and transposable elements in the genome. SSRs were identified for developing markers from draft genome assemblies, transcriptome sequences and genome sur...

  • Review
  • Open Access
20 Citations
10,960 Views
103 Pages

13 March 2020

Non-biting midges of the fly family Chironomidae are extremely abundant and diverse in Arctic regions and are essential components of Arctic ecosystems. Modern identification tools based on documented records of Arctic chironomid species are therefor...

  • Review
  • Open Access
19 Citations
5,174 Views
21 Pages

Circulating microRNA as Biomarkers for Gestational Diabetes Mellitus—A Systematic Review and Meta-Analysis

  • Sofie Dinesen,
  • Alisar El-Faitarouni,
  • Nanna Lond Skov Frisk,
  • Anja Elaine Sørensen and
  • Louise Torp Dalgaard

Gestational diabetes mellitus (GDM) is a severe pregnancy complication for both the woman and the child. Women who suffer from GDM have a greater risk of developing Type 2 diabetes mellitus (T2DM) later in life. Identification of any potential biomar...

  • Article
  • Open Access
9 Citations
4,485 Views
9 Pages

15 September 2021

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI–TOF MS) has been widely used for microbial identification, because of its speed and accuracy, since its introduction to clinical microbiology laboratories. In this st...

  • Article
  • Open Access
88 Citations
16,122 Views
17 Pages

Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota

  • Astrid P. Heikema,
  • Deborah Horst-Kreft,
  • Stefan A. Boers,
  • Rick Jansen,
  • Saskia D. Hiltemann,
  • Willem de Koning,
  • Robert Kraaij,
  • Maria A. J. de Ridder,
  • Chantal B. van Houten and
  • John P. Hays
  • + 2 authors

21 September 2020

Illumina and nanopore sequencing technologies are powerful tools that can be used to determine the bacterial composition of complex microbial communities. In this study, we compared nasal microbiota results at genus level using both Illumina and nano...

  • Article
  • Open Access
10 Citations
6,765 Views
16 Pages

8 January 2015

The discovery of novel microRNA (miRNA) and piwi-interacting RNA (piRNA) is an important task for the understanding of many biological processes. Most of the available miRNA and piRNA identification methods are dependent on the availability of the or...

  • Article
  • Open Access
2,530 Views
13 Pages

Optimization of 16S RNA Sequencing and Evaluation of Metagenomic Analysis with Kraken 2 and KrakenUniq

  • Nasserdine Papa Mze,
  • Cécile Fernand-Laurent,
  • Sonnentrucker Maxence,
  • Olfa Zanzouri,
  • Solen Daugabel and
  • Stéphanie Marque Juillet

27 August 2025

Background/Objectives: 16S ribosomal RNA sequencing has, for several years, been the main means of identifying bacterial and archaeal species. Low-throughput Sanger sequencing is often used for the detection and identification of microbial species, b...

  • Article
  • Open Access
2 Citations
1,234 Views
9 Pages

A Phylogenetic Analysis Based on Whole Genome Re-Sequencing of 41 Dendrobium Species

  • Feng-Ping Zhang,
  • Xue-Wei Fu,
  • Han-Run Li and
  • Shi-Bao Zhang

The genus Dendrobium (Orchidaceae) is highly renowned for its great medicinal and ornamental values. However, due to morphological similarities among closely related taxa within this genus, certain species are frequently subject to misidentification...

  • Article
  • Open Access
18 Citations
4,272 Views
17 Pages

The Identification of Small RNAs Differentially Expressed in Apple Buds Reveals a Potential Role of the Mir159-MYB Regulatory Module during Dormancy

  • Julio Garighan,
  • Etienne Dvorak,
  • Joan Estevan,
  • Karine Loridon,
  • Bruno Huettel,
  • Gautier Sarah,
  • Isabelle Farrera,
  • Julie Leclercq,
  • Priscila Grynberg and
  • Fernando Andrés
  • + 3 authors

3 December 2021

Winter dormancy is an adaptative mechanism that temperate and boreal trees have developed to protect their meristems against low temperatures. In apple trees (Malus domestica), cold temperatures induce bud dormancy at the end of summer/beginning of t...

  • Article
  • Open Access
3 Citations
2,732 Views
12 Pages

Many current gonococcal clinical isolates in Russia show atypical taxonomically significant biochemical activity, which leads to species misidentification. Molecular typing of such cultures according Neisseria gonorrhoeae multiantigen sequence typing...

  • Review
  • Open Access
12 Citations
3,938 Views
20 Pages

MicroRNAs in Plant Genetic Regulation of Drought Tolerance and Their Function in Enhancing Stress Adaptation

  • Yryszhan Zhakypbek,
  • Ayaz M. Belkozhayev,
  • Aygul Kerimkulova,
  • Bekzhan D. Kossalbayev,
  • Toktar Murat,
  • Serik Tursbekov,
  • Gaukhar Turysbekova,
  • Alnura Tursunova,
  • Kuanysh T. Tastambek and
  • Suleyman I. Allakhverdiev

30 January 2025

Adverse environmental conditions, including drought stress, pose a significant threat to plant survival and agricultural productivity, necessitating innovative and efficient approaches to enhance their resilience. MicroRNAs (miRNAs) are recognized as...

  • Communication
  • Open Access
4 Citations
2,905 Views
9 Pages

First Description of Simplicillium lanosoniveum, a Potential Antagonist of the Coffee Leaf Rust from Cuba

  • Yamilé Baró Robaina,
  • Isel González Marrero,
  • María Elena Lorenzo Nicao,
  • Rafael F. Castañeda Ruiz,
  • De-Wei Li,
  • Amaia Ponce de la Cal,
  • Haifa Ben Gharsa,
  • Romina G. Manfrino,
  • Christina Schuster and
  • Andreas Leclerque

(1) The fungal genus Simplicillium (Cordycipitaceae: Hypocreales) has an extensive distribution and a broad spectrum of hosts and substrates. The species Simplicillium lanosoniveum is a mycoparasite with potential for biological control of coffee lea...

  • Article
  • Open Access
5 Citations
4,655 Views
19 Pages

Morphological Traits and Capture Depth of the Norwegian Skate (Dipturus nidarosiensis (Storm, 1881)) from Two Mediterranean Populations

  • Pierluigi Carbonara,
  • Andrea Bellodi,
  • Walter Zupa,
  • Marilena Donnaloia,
  • Palma Gaudio,
  • Cosmidano Neglia and
  • Maria Cristina Follesa

20 December 2021

The Norwegian skate Dipturus nidarosiensis (Storm, 1881) has only recently been recorded in the western-central Mediterranean Sea. It was hypothesized a more ancient presence of the species, which has not been detected due to a misidentification with...

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