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587 Results Found

  • Review
  • Open Access
4,663 Views
25 Pages

20 August 2025

Microcosm technology serves as a sophisticated tool for simulating natural ecosystems, facilitating the examination of pollutants’ ecological impacts across population, community, and ecosystem scales. Currently, this technology finds extensive...

  • Article
  • Open Access
3 Citations
2,945 Views
20 Pages

The creation of oral microcosms with reproducible composition is important for developing model systems of the oral microbiome. However, oral microbiomes vary substantially across individuals. To derive a reproducible composition from inocula sourced...

  • Article
  • Open Access
747 Views
19 Pages

Effects of Nitrogen and Phosphorus on Estuarine Phytoplankton Communities in Aquatic Microcosms

  • Jianan Ling,
  • Chao Wei,
  • Dongning Yang,
  • Jiangning Zeng,
  • Fangping Cheng,
  • Xin Zheng and
  • Zhanhong Yang

19 September 2025

Phytoplankton serves as the primary producer in estuarine ecosystems, with its community structure and dynamics being directly influenced by the concentration and ratio of nitrogen (N) and phosphorus (P) nutrients. This study utilized raw water from...

  • Article
  • Open Access
23 Citations
4,501 Views
14 Pages

Enhancement of Chromium (VI) Reduction in Microcosms Amended with Lactate or Yeast Extract: A Laboratory-Scale Study

  • Valeria Ancona,
  • Claudia Campanale,
  • Marina Tumolo,
  • Domenico De Paola,
  • Claudio Ardito,
  • Angela Volpe and
  • Vito Felice Uricchio

A laboratory-scale study was carried out to evaluate the groundwater bioremediation potential of hexavalent chromium (Cr(VI)), taking into account the chromate pollution of an industrial site located in Southern Italy (Apulia Region). The reduction o...

  • Article
  • Open Access
5 Citations
4,426 Views
20 Pages

Responses of Bacterial Taxonomical Diversity Indicators to Pollutant Loadings in Experimental Wetland Microcosms

  • Subhomita Ghosh Roy,
  • Charles F. Wimpee,
  • S. Andrew McGuire and
  • Timothy J. Ehlinger

16 January 2022

Urbanization results in higher stormwater loadings of pollutants such as metals and nutrients into surface waters. This directly impacts organisms in aquatic ecosystems, including microbes. Sediment microbes are known for pollution reduction in the f...

  • Article
  • Open Access
15,109 Views
13 Pages

Effect of Surrounding Detritus on Phragmites australis Litter Decomposition: Evidence from Laboratory Aquatic Microcosms

  • Franca Sangiorgio,
  • Daniela Santagata,
  • Fabio Vignes,
  • Maurizio Pinna and
  • Alberto Basset

The availability of detritus is a key factor influencing aquatic biota and can significantly affect decomposition processes. In this study, we investigated how varying quantities of surrounding detritus impact leaf litter decay rates. It was tested i...

  • Article
  • Open Access
9 Citations
4,038 Views
17 Pages

Genotoxicity of Natural Water during the Mass Development of Cyanobacteria Evaluated by the Allium Test Method: A Model Experiment with Microcosms

  • Dmitry S. Pesnya,
  • Svetlana A. Kurbatova,
  • Andrey N. Sharov,
  • Ekaterina N. Chernova,
  • Igor Y. Yershov,
  • Galina V. Shurganova and
  • Ekaterina L. Vodeneeva

21 May 2022

Cyanobacteria, which develop abundantly in aquatic ecosystems, can be harmful to humans and animals not only by releasing toxins that cause poisoning but also by provoking cytogenetic effects. The influence of the mass development of cyanobacteria on...

  • Article
  • Open Access
5 Citations
3,923 Views
19 Pages

We investigated the impacts of spherical and triangular-plate-shaped lipid-coated silver nanoparticles (AgNPs) designed to prevent surface oxidation and silver ion (Ag+) dissolution in a small-scale microcosm to examine the role of shape and surface...

  • Article
  • Open Access
15 Citations
3,568 Views
16 Pages

Influence of Macrophyte and Gut Microbiota on Mercury Contamination in Fish: A Microcosms Study

  • Sophie Gentès,
  • Mathilde Monperrus,
  • Alexia Legeay,
  • Claire Gassie,
  • Régine Maury-Brachet,
  • Jean-Marc André and
  • Rémy Guyoneaud

22 February 2020

The freshwater lakes of southwestern France are subject to the development of invasive macrophytes which are associated with mercury (Hg) contamination of the food web. The aim of this study was to determine the bioavailability of methylmercury (MeHg...

  • Article
  • Open Access
2 Citations
2,927 Views
14 Pages

Identification of Aniline-Degrading Bacteria Using Stable Isotope Probing Technology and Prediction of Functional Genes in Aerobic Microcosms

  • Baoqin Li,
  • Muhammad Usman Ghani,
  • Weimin Sun,
  • Xiaoxu Sun,
  • Huaqing Liu,
  • Geng Yan,
  • Rui Yang,
  • Ying Huang,
  • Youhua Ren and
  • Benru Song

15 January 2024

Aniline, a vital component in various chemical industries, is known to be a hazardous persistent organic pollutant that can cause environmental pollution through its manufacturing, processing, and transportation. In this study, the microcosms were es...

  • Article
  • Open Access
3 Citations
3,909 Views
31 Pages

20 May 2022

Mineral precipitation can be observed in natural environments, such as lagoons, rivers, springs, and soils. The primary precipitation process has long been believed to be abiotic due to evaporation, leading to phase supersaturation. However, biotic i...

  • Article
  • Open Access
4 Citations
5,599 Views
14 Pages

Changes in Microbial (Bacteria and Archaea) Plankton Community Structure after Artificial Dispersal in Grazer-Free Microcosms

  • Hera Karayanni,
  • Alexandra Meziti,
  • Sofie Spatharis,
  • Savvas Genitsaris,
  • Claude Courties and
  • Konstantinos A. Kormas

Microbes are considered to have a global distribution due to their high dispersal capabilities. However, our knowledge of the way geographically distant microbial communities assemble after dispersal in a new environment is limited. In this study, we...

  • Article
  • Open Access
29 Citations
6,341 Views
15 Pages

The current knowledge about the role terrestrial ornamental plants play in constructed wetlands (CWs) has scarcely been evaluated. Likewise, little attention has been given towards the use of new support or fill media for subsurface flow CWs, which m...

  • Article
  • Open Access
11,046 Views
13 Pages

Freshwater Microcosms-Based Assessment of Eco-toxicological Effects of a Chemical Effluent from the Pilcam Industry in Cameroon

  • A . Monkiedje,
  • T. Njine,
  • A. L. Meyabeme Elono,
  • S. H. Zebaze,
  • N. Kemka,
  • P. B. Tchounwou and
  • J. E. Djomo

We studied the acute toxicity of a raw effluent from a battery manufacturing plant (Pilcam) in Douala, Cameroon, to a freshwater fish (Oreochromis niloticus), and subsequently evaluated its sub-acute effects on water quality and the biota in freshwat...

  • Article
  • Open Access
8 Citations
2,785 Views
19 Pages

The Impact of Anti-Inflammatory Drugs on the Prokaryotic Community Composition and Selected Bacterial Strains Based on Microcosm Experiments

  • Rózsa Farkas,
  • Tamás Mireisz,
  • Marwene Toumi,
  • Gorkhmaz Abbaszade,
  • Nóra Sztráda and
  • Erika Tóth

Non-steroidal anti-inflammatory drugs (NSAIDs) are increasingly recognized as potential environmental contaminants that may induce toxicity in aquatic ecosystems. This 3-week microcosm experiment explores the acute impacts of NSAIDs, including diclof...

  • Article
  • Open Access
16 Citations
3,379 Views
13 Pages

Activated sludge (AS) microcosm experiments usually begin with inoculating a bioreactor with an AS mixed culture. During the bioreactor startup, AS communities undergo, to some extent, a distortion in their characteristics (e.g., loss of diversity)....

  • Article
  • Open Access
4 Citations
2,155 Views
14 Pages

Formation of Microalgal Hunting Nets in Freshwater Microcosm Food Web: Microscopic Evidence

  • Goran Kovačević,
  • Daniela Petrinec,
  • Petra Tramontana Ljubičić,
  • Siegfried Reipert,
  • Damir Sirovina,
  • Maria Špoljar,
  • Petra Peharec Štefanić and
  • Davor Želježić

30 September 2023

The microcosm is a laboratory method frequently used in ecological studies related to population and food web interactions and environmental dynamics. It simultaneously brings into interaction different species in the same controlled laboratory exper...

  • Article
  • Open Access
6 Citations
4,523 Views
12 Pages

14 November 2019

Anthropogenic eutrophication has caused widespread environmental problems in freshwater lakes, reducing biodiversity and disrupting the classic pelagic food chain. Increasing our understanding of the exact role of nutrients and physicochemical variab...

  • Article
  • Open Access
4 Citations
3,303 Views
12 Pages

Duration, but Not Bottle Volume, Affects Phytoplankton Community Structure and Growth Rates in Microcosm Experiments

  • Rita B. Domingues,
  • Benjamin A. Mosley,
  • Patrícia Nogueira,
  • Inês B. Maia and
  • Ana B. Barbosa

16 January 2023

It is generally assumed that the larger the bottle volume, the longer the duration of phytoplankton microcosm experiments. We hypothesize that volume and duration are independent, as volume does not regulate the extension of the exponential growth ph...

  • Article
  • Open Access
2 Citations
3,654 Views
19 Pages

1 March 2022

Studies using soil microcosms are very common, but few involve flooded soils, and comparing the results from such an experiment with natural conditions is unheard of. In the present study, we investigated the biological activity of soil (pH value, de...

  • Abstract
  • Open Access
711 Views
1 Page

Petroleum hydrocarbon pollution (PHP) poses a significant environmental threat and affects both marine and terrestrial ecosystems. This study focused on the isolation and screening of indigenous petroleum-degrading microorganisms from Mile 2 Lagoon,...

  • Article
  • Open Access
4 Citations
1,969 Views
12 Pages

31 January 2024

This study aimed to compare the longitudinal efficacy between chlorhexidine gluconate (CHX; 0.12%) and cold atmospheric plasma (CAP) in reducing oral biofilm pathogenicity, utilizing a quantitative light-induced fluorescence-digital (QLF-D) camera. O...

  • Article
  • Open Access
13 Citations
3,531 Views
15 Pages

Oral Microcosm Biofilms Grown under Conditions Progressing from Peri-Implant Health, Peri-Implant Mucositis, and Peri-Implantitis

  • Vanessa Sousa,
  • Dave Spratt,
  • Mehmet Davrandi,
  • Nikos Mardas,
  • Víctor Beltrán and
  • Nikolaos Donos

Peri-implantitis is a disease influenced by dysbiotic microbial communities that play a role in the short- and long-term outcomes of its clinical treatment. The ecological triggers that establish the progression from peri-implant mucositis to peri-im...

  • Article
  • Open Access
9 Citations
5,124 Views
20 Pages

The main purpose of this study was to degrade total petroleum hydrocarbons (TPHs) from contaminated soil in batch microcosm reactors. Native soil fungi isolated from the same petroleum-polluted soil and ligninolytic fungal strains were screened and a...

  • Article
  • Open Access
9 Citations
2,550 Views
18 Pages

Effects of Algicidal Macrophyte Metabolites on Cyanobacteria, Microcystins, Other Plankton, and Fish in Microcosms

  • Svetlana Kurbatova,
  • Nadezhda Berezina,
  • Andrey Sharov,
  • Ekaterina Chernova,
  • Evgeny Kurashov,
  • Yulia Krylova,
  • Igor Yershov,
  • Alexander Mavrin,
  • Natalia Otyukova and
  • Roman Fedorov

28 August 2023

To control harmful algae blooms (HABs), methods based on natural mechanisms are now required. We investigated the effects of an algicide derived from macrophyte metabolites, namely mixtures of gallic, tetradecanoic, heptanoic, and octanoic acids (1:1...

  • Feature Paper
  • Article
  • Open Access
5 Citations
3,633 Views
9 Pages

A Microcosm Treatability Study for Evaluating Wood Mulch-Based Amendments as Electron Donors for Trichloroethene (TCE) Reductive Dechlorination

  • Edoardo Masut,
  • Alessandro Battaglia,
  • Luca Ferioli,
  • Anna Legnani,
  • Carolina Cruz Viggi,
  • Matteo Tucci,
  • Marco Resitano,
  • Alessandro Milani,
  • Camilla de Laurentiis and
  • Federico Aulenta
  • + 2 authors

15 July 2021

In this study, wood mulch-based amendments were tested in a bench-scale microcosm experiment in order to assess the treatability of saturated soils and groundwater from an industrial site contaminated by chlorinated ethenes. Wood mulch was tested alo...

  • Article
  • Open Access
3 Citations
3,453 Views
16 Pages

Co-Selection of Bacterial Metal and Antibiotic Resistance in Soil Laboratory Microcosms

  • Ali Heydari,
  • Nick D. Kim,
  • Patrick J. Biggs,
  • Jacqui Horswell,
  • Gerty J. H. P. Gielen,
  • Alma Siggins,
  • Matthew D. Taylor,
  • Collette Bromhead and
  • Barry R. Palmer

Accumulation of heavy metals (HMs) in agricultural soil following the application of superphosphate fertilisers seems to induce resistance of soil bacteria to HMs and appears to co-select for resistance to antibiotics (Ab). This study aimed to invest...

  • Article
  • Open Access
1 Citations
1,306 Views
9 Pages

12 October 2023

As demands for fresh water become more competitive between the processing plant and other consumers of water such as municipalities, interest has grown in recycling or reusing water for food processing. However, recycling the processing water from a...

  • Article
  • Open Access
1 Citations
1,402 Views
12 Pages

3 December 2024

The aim of this study was to evaluate the antibacterial effects of Paeonia lactiflora (PL) extract on oral microcosm biofilms and determine its usefulness as a natural alternative to current antimicrobial agents. Oral biofilms were cultivated on hydr...

  • Article
  • Open Access
2 Citations
6,340 Views
13 Pages

Interest in natural extracts for managing oral biofilms is increasing, with black cumin seed oil (BCSO) demonstrating efficacy against Streptococcus mutans. The effectiveness of antibacterial agents should be evaluated using multi-species oral biofil...

  • Article
  • Open Access
10 Citations
2,746 Views
7 Pages

Effect of Bacillus subtilis Zeolite Used for Sediment Remediation on Sulfide, Phosphate, and Nitrogen Control in a Microcosm

  • Maheshkumar Prakash Patil,
  • Ilwon Jeong,
  • Hee-Eun Woo,
  • Seok-Jin Oh,
  • Hyung Chul Kim,
  • Kyeongmin Kim,
  • Shinya Nakashita and
  • Kyunghoi Kim

Eutrophication is an emerging worldwide issue concerning the excessive accumulation of various pollutants in sediments, owing to the release of industrial or household wastewaters to coastal areas. The coastal sediment of Goseong Bay in the Republic...

  • Article
  • Open Access
1,978 Views
20 Pages

The introduction of NaCl in freshwater caused by winter runoffs is a problem whose consequences are still little understood. We sought to analyze the effect of NaCl addition on microbial communities of the hypolimnion and bottom sediments of a Canadi...

  • Article
  • Open Access
21 Citations
4,221 Views
11 Pages

Triclosan Alters Microbial Communities in Freshwater Microcosms

  • Alexandra Clarke,
  • Daniella Azulai,
  • M. Elias Dueker,
  • Michiel Vos and
  • Gabriel G. Perron

8 May 2019

The effect of triclosan on microbial communities that are found in soil and sediments is well documented. However, little is known regarding the possible effects of triclosan on microbial communities that are present in the column of freshwater strea...

  • Article
  • Open Access
7 Citations
2,244 Views
18 Pages

Differential Modulation of Saliva-Derived Microcosm Biofilms by Antimicrobial Peptide LL-31 and D-LL-31

  • Kahena R. Soldati,
  • Yaling Jiang,
  • Bernd W. Brandt,
  • Rob A. M. Exterkate,
  • Mark J. Buijs,
  • Kamran Nazmi,
  • Wendy E. Kaman,
  • Lei Cheng,
  • Floris J. Bikker and
  • Dong Mei Deng
  • + 1 author

29 October 2023

Microbiome modulation, aiming to restore a health-compatible microbiota, is a novel strategy to treat periodontitis. This study evaluated the modulation effects of antimicrobial peptide LL-31 and its D-enantiomer (D-LL-31) on saliva-derived microcosm...

  • Article
  • Open Access
1 Citations
7,528 Views
11 Pages

The genetic transformation of trees by wood modification genes for the improvement of forest plantations results in shifts in plant litter quality. These alterations in plant chemistry lead to changes in decomposition rates, thus affecting the carbon...

  • Article
  • Open Access
6 Citations
2,161 Views
12 Pages

Effects of Florfenicol on nirS-Type Denitrification Community Structure of Sediments in an Aquatic Microcosm Model

  • Tengyue Zhang,
  • Junying Sun,
  • Jinju Peng,
  • Yuexia Ding,
  • Yang Li,
  • Haotian Ma,
  • Mengbo Yu and
  • Yi Ma

Florfenicol is one of the most widely used antibiotics in aquaculture and veterinary clinics because of its low side effects and strong bactericidal effect. A total of 45~60% of florfenicol is not absorbed by the animal body and accumulates in the aq...

  • Article
  • Open Access
3 Citations
2,902 Views
13 Pages

Perfluorobutane sulfonate (PFBS) has been found in increasing concentrations in the environment. However, its effect on litter decomposition in soils is still unclear. Therefore, the effect of PFBS on the decomposition of various litter types was tes...

  • Article
  • Open Access
14 Citations
3,854 Views
17 Pages

Removal of Diesel Oil in Soil Microcosms and Implication for Geophysical Monitoring

  • Francesca Bosco,
  • Annalisa Casale,
  • Fulvia Chiampo and
  • Alberto Godio

11 August 2019

Bioremediation of soils polluted with diesel oil is one of the methods already applied on a large scale. However, several questions remain open surrounding the operative conditions and biological strategies to be adopted to optimize the removal effic...

  • Article
  • Open Access
6 Citations
4,775 Views
13 Pages

Biotic interactions structure ecological communities but abiotic factors affect the strength of these relationships. These interactions are difficult to study in soils due to their vast biodiversity and the many environmental factors that affect soil...

  • Article
  • Open Access
6 Citations
3,639 Views
17 Pages

14 March 2020

We investigated three shallow wetlands in South Korea to understand the spatial distribution of cladoceran species (Simocephalus vetulus and Daphnia obtusa) associated with different environmental variables, through field sampling, stable isotope ana...

  • Article
  • Open Access
3 Citations
2,979 Views
13 Pages

18 August 2023

Valorisation of wheat bran can be achieved by solid state fermentation (SSF), through application of this material as a growth substrate for a natural white rot fungal isolate, Trametes versicolor CM13, to produce lignin-degrading enzymes. One of the...

  • Article
  • Open Access
9 Citations
3,724 Views
14 Pages

The Influence of pCO2-Driven Ocean Acidification on Open Ocean Bacterial Communities during A Short-Term Microcosm Experiment in the Eastern Tropical South Pacific (ETSP) off Northern Chile

  • Paulina Aguayo,
  • Víctor L. Campos,
  • Carlos Henríquez,
  • Francisca Olivares,
  • Rodrigo De Ia Iglesia,
  • Osvaldo Ulloa and
  • Cristian A. Vargas

Due to the increasing anthropogenic CO2 emissions, Ocean Acidification (OA) is progressing rapidly around the world. Despite the major role that microorganisms play on the marine biogeochemical cycling and ecosystem functioning, the response of bacte...

  • Article
  • Open Access
23 Citations
3,623 Views
14 Pages

23 September 2022

This study evaluates the effects of a broad-spectrum antibiotic (florfenicol) on antibiotic resistance genes (ARGs) and bacterial community structure in aquatic environments. We constructed an indoor aquatic microcosm model, adding different concentr...

  • Article
  • Open Access
6 Citations
2,886 Views
11 Pages

Edwardsiella piscicida is an important fish pathogen responsible for economic losses in global aquaculture, and E. tarda is also a human zoonotic pathogen. In this study, the survival of E. piscicida and E. tarda strains kept in filtered and steriliz...

  • Article
  • Open Access
46 Citations
8,213 Views
16 Pages

4 June 2019

Terrestrial microcosms (TMCs) are frequently used for testing the durability of wood and wood-based materials, as well as the protective effectiveness of wood preservatives. In contrary to experiments in soil ecology sciences, the experimental setup...

  • Article
  • Open Access
4 Citations
5,410 Views
12 Pages

Long-Term Effects of Mercury on Biofilms Grown in Contaminated Microcosms: A Pilot Study

  • Perrine Dranguet,
  • Aline Freiburghaus,
  • Vera I. Slaveykova and
  • Séverine Le Faucheur

Biofilms are important components of the mercury (Hg) biogeochemical cycle. However, Hg effects on biofilm communities are overlooked. Here, we present results of a pilot study on the chronic effects of Hg on biofilms, notably on the potential change...

  • Article
  • Open Access
3 Citations
2,380 Views
16 Pages

16 June 2023

Lack of maintenance can lead to ‘weedy’ spontaneous vegetation on green roofs. Aspects of green roof design, including substrate depth and roof height, have been shown to influence the composition of spontaneous vegetation. In drier clima...

  • Article
  • Open Access
65 Citations
8,345 Views
19 Pages

Effects of the Use of Ornamental Plants and Different Substrates in the Removal of Wastewater Pollutants through Microcosms of Constructed Wetlands

  • Luis Carlos Sandoval-Herazo,
  • Alejandro Alvarado-Lassman,
  • José Luis Marín-Muñiz,
  • Juan Manuel Méndez-Contreras and
  • Sergio Aurelio Zamora-Castro

16 May 2018

The high costs involved in treating wastewater are problems that developing countries confront, mainly in rural areas. Therefore, Constructed Wetlands (CWs), which are composed of substrate, vegetation, and microorganisms, are an economically and eco...

  • Article
  • Open Access
20 Citations
7,348 Views
16 Pages

Attenuation of micro-contaminants is a very complex field in environmental science and evidence suggests that biodegradation rates of micro-contaminants in the aqueous environment depend on the water matrix. The focus of the study presented here is t...

  • Feature Paper
  • Article
  • Open Access
5 Citations
4,134 Views
19 Pages

Evaluating Multiple Stressor Effects on Benthic–Pelagic Freshwater Communities in Systems of Different Complexities: Challenges in Upscaling

  • Vinita Vijayaraj,
  • Nora Kipferler,
  • Herwig Stibor,
  • Joey Allen,
  • Franz Hölker,
  • Martin Laviale,
  • Joséphine Leflaive,
  • Gregorio Alejandro López Moreira Mazacotte,
  • Bastian Herbert Polst and
  • Elisabeth Maria Gross
  • + 1 author

14 February 2022

Upscaling of ecological effects from indoor microcosms to outdoor mesocosms bridging the gap between controlled laboratory conditions and highly complex natural environments poses several challenges: typical standard water types used in laboratory ex...

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