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3,080 Results Found

  • Article
  • Open Access
440 Views
15 Pages

Genomic and Transcriptomic Characterization of Umatilla Virus Isolated and Identified from Mosquitoes in Ningxia, China

  • Kun Han,
  • Yuhong Yang,
  • Long Wang,
  • Liqin Yu,
  • Ruichen Wang,
  • Xiaoyu Gu,
  • Fan Li,
  • Qikai Yin,
  • Shihong Fu and
  • Huanyu Wang
  • + 3 authors

During the 2023 surveillance of mosquito-borne viruses in Ningxia Hui Autonomous Region, a strain of Umatilla virus (UMAV) was isolated from a pool of Culex pipiens pallens (NX23166) collected in Xiji County and cultured in C6/36 cells. Electron micr...

  • Article
  • Open Access
16 Citations
3,557 Views
18 Pages

Combining Physio-Biochemical Characterization and Transcriptome Analysis Reveal the Responses to Varying Degrees of Drought Stress in Brassica napus L.

  • Shuai Fang,
  • Peimin Zhao,
  • Zengdong Tan,
  • Yan Peng,
  • Lintang Xu,
  • Yutong Jin,
  • Fang Wei,
  • Liang Guo and
  • Xuan Yao

Brassica napus L. has become one of the most important oil-bearing crops, and drought stress severely influences its yield and quality. By combining physio-biochemical characterization and transcriptome analysis, we studied the response of B. napus p...

  • Article
  • Open Access
742 Views
15 Pages

30 September 2025

The swimming crab is a commercially and nutritionally important marine resource with the highest catch volumes in Mexico occurring along the East Pacific coast. Among the Pacific species of the genus Callinectes, the blue crab C. arcuatus has the wid...

  • Article
  • Open Access
5 Citations
4,794 Views
20 Pages

Genomic and Transcriptomic Characterization of Alternaria alternata during Infection

  • Yunpeng Gai,
  • Qichen Niu,
  • Jinchao Kong,
  • Lei Li,
  • Xingxing Liang,
  • Yuwei Cao,
  • Xianqi Zhou,
  • Xuepeng Sun,
  • Haijie Ma and
  • Chen Jiao
  • + 3 authors

10 March 2023

Host-pathogen interactions are the result of the continuously evolving dynamics of the genomic interphases between pathogens and the host plants. Alternaria brown spot (ABS) caused by the pathogen Alternaria alternata is a serious threat to tangerine...

  • Article
  • Open Access
5 Citations
4,662 Views
24 Pages

Transcriptomic Analysis of the Venom Gland and Enzymatic Characterization of the Venom of Phoneutria depilata (Ctenidae) from Colombia

  • Julieta Vásquez-Escobar,
  • Teresa Romero-Gutiérrez,
  • José Alejandro Morales,
  • Herlinda C. Clement,
  • Gerardo A. Corzo,
  • Dora M. Benjumea and
  • Ligia Luz Corrales-García

21 April 2022

The transcriptome of the venom glands of the Phoneutria depilata spider was analyzed using RNA-seq with an Illumina protocol, which yielded 86,424 assembled transcripts. A total of 682 transcripts were identified as potentially coding for venom compo...

  • Article
  • Open Access
12 Citations
3,663 Views
15 Pages

Proteo-Transcriptomic Characterization of Sirex nitobei (Hymenoptera: Siricidae) Venom

  • Chenglong Gao,
  • Lili Ren,
  • Ming Wang,
  • Zhengtong Wang,
  • Ningning Fu,
  • Huiying Wang,
  • Xiaochen Wang,
  • Tegen Ao,
  • Wensheng Du and
  • Juan Shi
  • + 2 authors

11 August 2021

The wood-boring woodwasp Sirex nitobei is a native pest in Asia, infecting and weakening the host trees in numerous ecological and commercial coniferous forest plantations. In China, hosts of S. nitobei are diverse, so the pest has spread to several...

  • Article
  • Open Access
16 Citations
4,113 Views
15 Pages

Transcriptomic Characterization Reveals Attributes of High Influenza Virus Productivity in MDCK Cells

  • Qian Ye,
  • Thu Phan,
  • Wei-Shou Hu,
  • Xuping Liu,
  • Li Fan,
  • Wen-Song Tan and
  • Liang Zhao

1 November 2021

The Madin–Darby Canine Kidney (MDCK) cell line is among the most commonly used cell lines for the production of influenza virus vaccines. As cell culture-based manufacturing is poised to replace egg-based processes, increasing virus production...

  • Article
  • Open Access
3 Citations
4,529 Views
25 Pages

Genomic and Transcriptomic Characterization of Atypical Recurrent Flank Alopecia in the Cesky Fousek

  • Silvie Neradilová,
  • Alexandria M. Schauer,
  • Jessica J. Hayward,
  • Magdalena A. T. Brunner,
  • Magdalena Bohutínská,
  • Vidhya Jagannathan,
  • Laurie B. Connell,
  • Adam R. Boyko,
  • Monika M. Welle and
  • Barbora Černá Bolfíková

7 April 2022

Non-inflammatory alopecia is a frequent skin problem in dogs, causing damaged coat integrity and compromised appearance of affected individuals. In this study, we examined the Cesky Fousek breed, which displays atypical recurrent flank alopecia (aRFA...

  • Article
  • Open Access
23 Citations
7,401 Views
20 Pages

Proteo-Transcriptomic Characterization of the Venom from the Endoparasitoid Wasp Pimpla turionellae with Aspects on Its Biology and Evolution

  • Rabia Özbek,
  • Natalie Wielsch,
  • Heiko Vogel,
  • Günter Lochnit,
  • Frank Foerster,
  • Andreas Vilcinskas and
  • Björn Marcus von Reumont

10 December 2019

Within mega-diverse Hymenoptera, non-aculeate parasitic wasps represent 75% of all hymenopteran species. Their ovipositor dual-functionally injects venom and employs eggs into (endoparasitoids) or onto (ectoparasitoids) diverse host species. Few endo...

  • Article
  • Open Access
1 Citations
1,104 Views
23 Pages

Transcriptomic Characterization of Candidate Genes for Fusarium Resistance in Maize (Zea mays L.)

  • Aleksandra Sobiech,
  • Agnieszka Tomkowiak,
  • Tomasz Jamruszka,
  • Tomasz Kosiada,
  • Julia Spychała,
  • Maciej Lenort and
  • Jan Bocianowski

Fusarium diseases are among the most dangerous fungal diseases of plants. To date, there are no plant protectants that completely prevent fusariosis. Current breeding trends are therefore focused on increasing genetic resistance. While global modern...

  • Article
  • Open Access
1 Citations
2,692 Views
23 Pages

Transcriptomic Characterization of Genes Regulating the Stemness in Porcine Atrial Cardiomyocytes during Primary In Vitro Culture

  • Rut Bryl,
  • Mariusz J. Nawrocki,
  • Karol Jopek,
  • Mariusz Kaczmarek,
  • Dorota Bukowska,
  • Paweł Antosik,
  • Paul Mozdziak,
  • Maciej Zabel,
  • Piotr Dzięgiel and
  • Bartosz Kempisty

4 June 2023

Heart failure remains a major cause of death worldwide. There is a need to establish new management options as current treatment is frequently suboptimal. Clinical approaches based on autologous stem cell transplant is potentially a good alternative....

  • Article
  • Open Access
19 Citations
3,300 Views
16 Pages

Isolation, Characterization, and Transcriptome Analysis of an ISKNV-Like Virus from Largemouth Bass

  • Zhuqing Xu,
  • Jiaming Liao,
  • Dongzhuo Zhang,
  • Shaoli Liu,
  • Luhao Zhang,
  • Shaozhu Kang,
  • Linting Xu,
  • Hong Chen,
  • Wenquan Peng and
  • Jingguang Wei
  • + 2 authors

30 January 2023

Largemouth bass (Micropterus salmoides) is an important commercial fish farmed in China. Challenges related to diseases caused by pathogens, such as iridovirus, have become increasingly serious. In 2017, we detected iridovirus-infected diseased large...

  • Article
  • Open Access
22 Citations
6,671 Views
18 Pages

Molecular Classification and Tumor Microenvironment Characterization of Gallbladder Cancer by Comprehensive Genomic and Transcriptomic Analysis

  • Nobutaka Ebata,
  • Masashi Fujita,
  • Shota Sasagawa,
  • Kazuhiro Maejima,
  • Yuki Okawa,
  • Yutaka Hatanaka,
  • Tomoko Mitsuhashi,
  • Ayako Oosawa-Tatsuguchi,
  • Hiroko Tanaka and
  • Hidewaki Nakagawa
  • + 3 authors

10 February 2021

Gallbladder cancer (GBC), a rare but lethal disease, is often diagnosed at advanced stages. So far, molecular characterization of GBC is insufficient, and a comprehensive molecular portrait is warranted to uncover new targets and classify GBC. We per...

  • Article
  • Open Access
16 Citations
6,354 Views
19 Pages

Transcriptomic Characterization of the South American Freshwater Stingray Potamotrygon motoro Venom Apparatus

  • Filipe Silva,
  • Yu Huang,
  • Vítor Yang,
  • Xidong Mu,
  • Qiong Shi and
  • Agostinho Antunes

18 December 2018

Venomous animals are found through a wide taxonomic range including cartilaginous fish such as the freshwater stingray Potamotrygon motoro occurring in South America, which can injure people and cause venom-related symptoms. Ensuring the efficacy of...

  • Article
  • Open Access
11 Citations
3,818 Views
18 Pages

Physiological Characterization and Transcriptome Analysis of Camellia oleifera Abel. during Leaf Senescence

  • Shiwen Yang,
  • Kehao Liang,
  • Aibin Wang,
  • Ming Zhang,
  • Jiangming Qiu and
  • Lingyun Zhang

28 July 2020

Camellia (C.) oleifera Abel. is an evergreen small arbor with high economic value for producing edible oil that is well known for its high level of unsaturated fatty acids. The yield formation of tea oil extracted from fruit originates from the leave...

  • Article
  • Open Access
1 Citations
2,685 Views
16 Pages

3 September 2021

This study characterized the transcriptome of Cacia cretifera thibetana and explored odorant binding proteins (OBPs) and their interaction with host-specific compounds. A total of 36 samples from six different organs including antennae, head, thorax,...

  • Article
  • Open Access
5 Citations
3,420 Views
24 Pages

Genome-Wide Identification, Characterization, and Transcriptomic Analysis of the Cyclin Gene Family in Brassica rapa

  • Sumer Zulfiqar,
  • Tiantian Zhao,
  • Yuanming Liu,
  • Lai Wei,
  • Muhammad Awais Farooq,
  • Javaria Tabusam,
  • Jianjun Zhao,
  • Xueping Chen,
  • Yanhua Wang and
  • Aixia Gu
  • + 5 authors

13 November 2022

Cyclins are involved in cell division and proliferation by activating enzymes required for the cell cycle progression. Our genome-wide analysis identified 76 cyclin genes in Brassica rapa, which were divided into nine different types (A-, B-, C-, D-,...

  • Article
  • Open Access
2 Citations
1,880 Views
22 Pages

Transcriptomic Characterization of the Porcine Urinary Bladder Trigone Following Intravesical Administration of Resiniferatoxin: Insights from High-Throughput Sequencing

  • Ewa Lepiarczyk,
  • Mateusz Maździarz,
  • Łukasz Paukszto,
  • Agnieszka Bossowska,
  • Mariusz Majewski,
  • Jerzy Kaleczyc,
  • Elżbieta Łopieńska-Biernat,
  • Łukasz Jaśkiewicz,
  • Agnieszka Skowrońska and
  • Marta Majewska
  • + 1 author

9 March 2025

Resiniferatoxin (RTX), a potent capsaicin analog, is being investigated as a therapeutic agent for neurogenic conditions, particularly those affecting bladder control. However, the transcriptomic effects of RTX on the urinary bladder remain largely u...

  • Perspective
  • Open Access
18 Citations
3,889 Views
11 Pages

10 March 2022

Bone marrow (BM) aspirates are the gold standard for patient prognostication and genetic characterization in multiple myeloma (MM). However, they represent an important limitation for periodic disease monitoring because they entail an aggressive proc...

  • Article
  • Open Access
2 Citations
2,534 Views
17 Pages

Full-Length Transcriptome Sequencing Analysis and Characterization of WRKY Transcription Factors Responsive to Cadmium Stress in Arabis paniculata

  • Tianjiao Chen,
  • Dan Zuo,
  • Jie Yu,
  • Yunyan Hou,
  • Hongcheng Wang,
  • Lei Gu,
  • Bin Zhu,
  • Huinan Wang and
  • Xuye Du

6 November 2023

Arabis paniculata is a newly discovered hyperaccumulator known for its ability to accumulate multiple metals. WRKY proteins play a significant role in plant responses to various stresses, including cadmium (Cd) stress. However, there is limited resea...

  • Article
  • Open Access
6 Citations
3,240 Views
12 Pages

Transcriptomic Characterization of Postmolar Gestational Choriocarcinoma

  • Constance Collet,
  • Jonathan Lopez,
  • Christophe Battail,
  • Fabienne Allias,
  • Mojgan Devouassoux-Shisheboran,
  • Sophie Patrier,
  • Nicolas Lemaitre,
  • Touria Hajri,
  • Jérôme Massardier and
  • Pierre-Adrien Bolze
  • + 4 authors

The human placenta shares properties with solid tumors, such as rapid growth, tissue invasion, cell migration, angiogenesis, and immune evasion. However, the mechanisms that drive the evolution from premalignant proliferative placental diseases—calle...

  • Article
  • Open Access
4 Citations
1,291 Views
16 Pages

Comprehensive Transcriptomic Analyses of Silk-Associated Genes and Functional Characterization of Key Silk Fibroins in Plutella xylostella

  • Rui-Chang Niu,
  • Fan-Xin Meng,
  • Qing-Hui Zeng,
  • Yi-Jing Wang,
  • Tong-Xian Liu,
  • Dong Chu and
  • Shi-Ze Zhang

The diamondback moth (DBM), Plutella xylostella (Lepidoptera: Plutellidae), is a serious agricultural pest that utilizes silk as a defensive mechanism, with silk fibroins playing a pivotal role in this process. Through comprehensive transcriptomic an...

  • Article
  • Open Access
54 Citations
6,199 Views
19 Pages

Transcriptomic Characterization of Cow, Donkey and Goat Milk Extracellular Vesicles Reveals Their Anti-Inflammatory and Immunomodulatory Potential

  • Samanta Mecocci,
  • Daniele Pietrucci,
  • Marco Milanesi,
  • Luisa Pascucci,
  • Silvia Filippi,
  • Vittorio Rosato,
  • Giovanni Chillemi,
  • Stefano Capomaccio and
  • Katia Cappelli

25 November 2021

Milk extracellular vesicles (mEVs) seem to be one of the main maternal messages delivery systems. Extracellular vesicles (EVs) are micro/nano-sized membrane-bound structures enclosing signaling molecules and thus acting as signal mediators between di...

  • Article
  • Open Access
581 Views
22 Pages

3 January 2026

This study prepared oregano essential oil-loaded liposomes (OEO-Lip) and systematically evaluated their physicochemical properties, stability, and antioxidant/antibacterial activities, along with the underlying mechanisms. Characterization revealed O...

  • Article
  • Open Access
10 Citations
1,989 Views
30 Pages

12 January 2025

The bHLH (basic helix–loop–helix) transcription factors function as crucial regulators in numerous biological processes including abiotic stress responses and plant development. According to our RNA-seq analysis of tomato seedlings under...

  • Article
  • Open Access
3 Citations
2,420 Views
19 Pages

Physiological and Transcriptomic Characterization of Rice Genotypes under Drought Stress

  • Qian Zhu,
  • Muhammad Ahmad Hassan,
  • Yiru Li,
  • Wuyun Fang,
  • Jingde Wu and
  • Shimei Wang

29 September 2024

Drought is a primary abiotic stress that inhibits rice (Oryza sativa L.) growth and development, and during the reproductive stage it has a negative impact on the rice seed-setting rate. This research study examined two rice lines, La-96 (drought sen...

  • Article
  • Open Access
1 Citations
775 Views
24 Pages

Transcriptomic Profiling Unravels the Molecular Mechanisms of GmCML-Mediated Resistance to Fusarium oxysporum in Soybean

  • Runnan Zhou,
  • Jia You,
  • Jinrong Li,
  • Xue Qu,
  • Yuxin Shang,
  • Honglei Ren and
  • Jiajun Wang

20 October 2025

Fusarium oxysporum-induced root rot severely threatens global soybean production, yet limited understanding of resistance mechanisms constrains breeding progress. This study conducted comparative transcriptomic analysis between highly resistant (Xiao...

  • Article
  • Open Access
1 Citations
1,496 Views
25 Pages

Transcriptomic Characterization of Genes Harboring Markers Linked to Maize Yield

  • Agnieszka Tomkowiak,
  • Tomasz Jamruszka,
  • Jan Bocianowski,
  • Aleksandra Sobiech,
  • Karolina Jarzyniak,
  • Maciej Lenort,
  • Sylwia Mikołajczyk and
  • Monika Żurek

29 November 2024

Background: It is currently believed that breeding priorities, including maize breeding, should focus on introducing varieties with greater utility value, specifically higher yields, into production. Global modern maize breeding relies on various mol...

  • Article
  • Open Access
7 Citations
2,412 Views
17 Pages

14 October 2023

Background: Copper and copper-binding proteins are key components of tumor progression as they play important roles in tumor invasion and migration, but their associations in gliomas remain unclear. Methods: Transcriptomic datasets of glioblastoma, l...

  • Article
  • Open Access
428 Views
16 Pages

Characterization of Drought-Responsive miRNAs in Peanut Through Integrated Transcriptomic Approaches

  • Xin Zhang,
  • Rui Zhang,
  • Zhenbo Chen,
  • Xiaoyu Zhang,
  • Xiaoji Zhang,
  • Yuexia Tian,
  • Yunyun Xue,
  • Huiqi Zhang,
  • Na Li and
  • Dongmei Bai

22 October 2025

Drought stress severely limits peanut productivity, highlighting the urgent need to understand the molecular mechanisms that underlie drought adaptation. While microRNAs (miRNAs) are known to play essential roles in plant stress responses, their func...

  • Article
  • Open Access
3 Citations
1,581 Views
24 Pages

20 December 2024

Although osteoclasts play crucial roles in the skeletal system, the mechanisms that underlie oxidative stress during osteoclastogenesis remain unclear. The transcription factor Nrf2 and its suppressor, Keap1, function as central mediators of oxidativ...

  • Article
  • Open Access
9 Citations
3,395 Views
17 Pages

Physiological and Transcriptomic Characterization of Sea-Wheatgrass-Derived Waterlogging Tolerance in Wheat

  • Wenqiang Li,
  • Ghana S. Challa,
  • Ajay Gupta,
  • Liping Gu,
  • Yajun Wu and
  • Wanlong Li

30 December 2021

Waterlogging, causing hypoxia stress and nitrogen depletion in the rhizosphere, has been an increasing threat to wheat production. We developed a wheat–sea wheatgrass (SWG) amphiploid showing superior tolerance to waterlogging and low nitrogen....

  • Article
  • Open Access
2 Citations
2,512 Views
10 Pages

Characterization of Transcriptomic and Proteomic Changes in the Skin after Chronic Fluocinolone Acetonide Treatment

  • Yongsu Choi,
  • Masaki Takasugi,
  • Kazuaki Takemura,
  • Yuya Yoshida,
  • Tomonori Kamiya,
  • Jun Adachi,
  • Daisuke Tsuruta and
  • Naoko Ohtani

6 December 2022

While topical corticosteroid (TCS) treatment is widely used for many skin diseases, it can trigger adverse side effects, and some of such effects can last for a long time after stopping the treatment. However, molecular changes induced by TCS treatme...

  • Article
  • Open Access
1 Citations
1,711 Views
12 Pages

4 December 2024

Opsin plays a regulatory role in phototaxis of Diaphorina citri, functioning as the initial station in the phototransduction cascade. Our study aimed to explore the D. citri phototransduction pathway to identify elicitors that may enhance D. citri ph...

  • Article
  • Open Access
1 Citations
966 Views
13 Pages

5 April 2025

Background/Objectives: Pyrrhalta aenescens, a major pest of elm trees, causes extensive ecological and economic damage through rapid population growth and defoliation. Existing research mainly focuses on its biological traits and chemical control, wi...

  • Article
  • Open Access
3 Citations
2,301 Views
17 Pages

Functional and Transcriptomic Characterization of Postnatal Maturation of ENS and SIP Syncytium in Mice Colon

  • Zhihao Wu,
  • Qianqian Wang,
  • Fan Yang,
  • Jiaxuan Wang,
  • Yuying Zhao,
  • Brian A. Perrino and
  • Jie Chen

23 November 2023

The interplay of the enteric nervous system (ENS) and SIP syncytium (smooth muscle cells–interstitial cells of Cajal–PDGFRα+ cells) plays an important role in the regulation of gastrointestinal (GI) motility. This study aimed to inv...

  • Article
  • Open Access
3 Citations
1,357 Views
20 Pages

Transcriptomic Characterization of miRNAs in Apis cerana Larvae Responding to Ascosphaera apis Infection

  • Yuxuan Song,
  • Jianfeng Qiu,
  • Jing Kang,
  • Ying Chen,
  • Ruihua Cao,
  • Wei Wang,
  • Mengyuan Dai,
  • Dafu Chen,
  • Zhongmin Fu and
  • Rui Guo

26 January 2025

Ascosphaera apis is a fungal pathogen that specifically infects bee larvae, causing an outbreak of chalkbrood disease in the bee colony and a decline in the number of bee colonies. The role of miRNA regulation in honeybees in response to A. apis infe...

  • Article
  • Open Access
11 Citations
4,004 Views
16 Pages

Transcriptomic Characterization of Nitrate-Enhanced Stevioside Glycoside Synthesis in Stevia (Stevia rebaudiana) Bertoni

  • Yuming Sun,
  • Ting Zhang,
  • Xiaoyang Xu,
  • Yongheng Yang,
  • Haiying Tong,
  • Luis Alejandro Jose Mur and
  • Haiyan Yuan

Nitrogen forms (nitrate (NO3) or ammonium (NH4+)) are vital to plant growth and metabolism. In stevia (Stevia rebaudiana), it is important to assess whether nitrogen forms can influence the synthesis of the high-value terpene metabolites-steviol gly...

  • Article
  • Open Access
1 Citations
1,710 Views
20 Pages

Characterization and Transcriptomic Analysis of Sorghum EIN/EIL Family and Identification of Their Roles in Internode Maturation

  • Min Tu,
  • Yuqing Hua,
  • Ti Shao,
  • Siyu Zhang,
  • Zihan Xiang,
  • Manting Yu,
  • Guoli Wang,
  • Zhuang Li,
  • Yun He and
  • Yin Li
  • + 1 author

19 September 2024

Ethylene-insensitive 3/Ethylene-insensitive3-like proteins (EIN3/EIL) represent a group of transcription factors critical for the ethylene signaling transduction that manipulate downstream ethylene-responsive genes, thereby regulating plant growth, d...

  • Article
  • Open Access
2 Citations
2,312 Views
23 Pages

Metabolic and Transcriptomic-Based Characterization of Streptococcus salivarius ssp. thermophilus Snew Fermentation in Milk

  • Ye Wang,
  • Haijie Zhao,
  • Huilin Zhang,
  • Baochao Hou,
  • Weilian Hung,
  • Jian He,
  • Chao Liang,
  • Baolei Li,
  • Chaoxin Man and
  • Ling Guo
  • + 2 authors

6 February 2025

Fermented milk has a long history. It is fermented by lactic acid bacteria and is rich in protein, minerals, vitamins, and other nutrients. As people’s pursuit of quality of life improves, consumers are paying increasing attention to fermented...

  • Article
  • Open Access
1 Citations
2,714 Views
15 Pages

Liver regeneration induced by partial hepatectomy (PHx) has attracted intensive research interests due to the great significance for liver resection and transplantation. The zebrafish (Danio rerio) is an excellent model to study liver regeneration. I...

  • Article
  • Open Access
15 Citations
4,827 Views
16 Pages

Transcriptomic Insight into Terpenoid Biosynthesis and Functional Characterization of Three Diterpene Synthases in Scutellaria barbata

  • Huabei Zhang,
  • Baolong Jin,
  • Junling Bu,
  • Juan Guo,
  • Tong Chen,
  • Ying Ma,
  • Jinfu Tang,
  • Guanghong Cui and
  • Luqi Huang

12 November 2018

Scutellaria barbata (Lamiaceae) is an important medicinal herb widely used in China, Korea, India, and other Asian countries. Neo-clerodane diterpenoids are the largest known group of Scutellaria diterpenoids and show promising cytotoxic activity aga...

  • Article
  • Open Access
158 Views
17 Pages

Characterization of Enterococcus faecium Based on Multi-Omics Approaches: Genomic, Transcriptomic, and Phenotypic Analyses

  • Jiayan Huang,
  • Haoyu Fan,
  • Yurui Wang,
  • Xiao Yue,
  • Zixuan Li,
  • Zhanchun Bai,
  • Da Qiong,
  • Zhuoma Gesang and
  • Sizhu Suolang

21 January 2026

Animal-derived E. faecium poses a public health risk due to its capacity to acquire antimicrobial resistance (AMR) and virulence genes. However, the pathogenicity and cross-host transmission potential of strains originating from unique environments,...

  • Article
  • Open Access
21 Citations
9,204 Views
26 Pages

Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics

  • Adwiteeya Misra,
  • Cameron D. Baker,
  • Elizabeth M. Pritchett,
  • Kimberly N. Burgos Villar,
  • John M. Ashton and
  • Eric M. Small

The neonatal mammalian heart exhibits a remarkable regenerative potential, which includes fibrotic scar resolution and the generation of new cardiomyocytes. To investigate the mechanisms facilitating heart repair after apical resection in neonatal mi...

  • Article
  • Open Access
453 Views
18 Pages

Full-Length Transcriptome Characterization and Molecular Analysis of the Longfin Batfish (Platax teira)

  • Lingeng Lv,
  • Baosuo Liu,
  • Huayang Guo,
  • Kecheng Zhu,
  • Nan Zhang,
  • Jinhui Sun and
  • Dianchang Zhang

8 November 2025

Platax teira is a marine fish species with both ornamental and economic value, but it faces challenges in aquaculture due to environmental stress and disease. Genetic research on P. teira has been limited due to the limitations of the partially incom...

  • Proceeding Paper
  • Open Access
1,405 Views
6 Pages

Transcriptome Characterization of Different Tissues of Stone Pine (Pinus pinea L.): De Novo Assembly

  • Ana Usié,
  • Bruna Mendes,
  • Marta Antunes,
  • Célia Leão,
  • Liliana Marum and
  • António Marcos Ramos

Stone pine (Pinus pinea L.) is an emblematic tree distributed around the whole Mediterranean basin. The species is well known for the economics of its timber, resins and edible seeds, the stone pine nuts commercialized in the food industry. Despite i...

  • Article
  • Open Access
38 Citations
6,632 Views
17 Pages

21 October 2016

Persian walnut (Juglans regia L.), valued for both its nut and wood, is an ecologically important temperate tree species native to the mountainous regions of central Asia. Despite its importance, there are still few transcriptomic resources in public...

  • Communication
  • Open Access
5 Citations
3,014 Views
15 Pages

De Novo Transcriptomic Characterization Enables Novel Microsatellite Identification and Marker Development in Betta splendens

  • Huapu Chen,
  • Xiaomeng Li,
  • Yaorong Wang,
  • Chunhua Zhu,
  • Hai Huang,
  • Wei Yang and
  • Guangli Li

9 August 2021

The wild populations of the commercially valuable ornamental fish species, Betta splendens, and its germplasm resources have long been threatened by habitat degradation and contamination with artificially bred fish. Because of the lack of effective m...

  • Article
  • Open Access
1 Citations
1,150 Views
18 Pages

Transcriptomic and Metabolomic Characterization of Volatile Flavor Compound Dynamics in Dragon Fruit (Selenicereus spp.) Development

  • Zhi-Jiang Wu,
  • Ri-Wen Ji,
  • Ze-Jian Huang,
  • Xiao-Ying Ye,
  • Li-Fang Huang,
  • Hai-Yan Deng,
  • Gui-Feng Lu,
  • Shuo-Tong Wei,
  • Chao-An Liu and
  • Gui-Dong Liang
  • + 2 authors

Dragon fruit comprises a wide variety of species that are rich in nutritional value and have great economic potential; however, numerous studies have focused on their nutritional and commercial quality. In contrast, few studies have addressed their f...

  • Article
  • Open Access
3 Citations
2,190 Views
20 Pages

Clinical and Transcriptomic Characterization of Metastatic Hormone-Sensitive Prostate Cancer Patients with Low PTEN Expression

  • Marta Garcia de Herreros,
  • Natalia Jiménez,
  • Joan Padrosa,
  • Caterina Aversa,
  • Laura Ferrer-Mileo,
  • Samuel García-Esteve,
  • Leonardo Rodríguez-Carunchio,
  • Isabel Trias,
  • Laia Fernández-Mañas and
  • Begoña Mellado
  • + 14 authors

Alterations in the PTEN tumor suppressor gene are common in prostate cancer. They have been associated with a more aggressive disease and poor outcomes and potential benefit of targeted therapies. The purpose of this work is to study the clinical and...

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