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688 Results Found

  • Review
  • Open Access
31 Citations
12,387 Views
17 Pages

Host-Microbe Interactions in Microgravity: Assessment and Implications

  • Jamie S. Foster,
  • Raymond M. Wheeler and
  • Regine Pamphile

26 May 2014

Spaceflight imposes several unique stresses on biological life that together can have a profound impact on the homeostasis between eukaryotes and their associated microbes. One such stressor, microgravity, has been shown to alter host-microbe interac...

  • Article
  • Open Access
13 Citations
5,116 Views
26 Pages

Human Adult Microbiota in a Static Colon Model: AhR Transcriptional Activity at the Crossroads of Host–Microbe Interaction

  • Elizabeth Goya-Jorge,
  • Irma Gonza,
  • Pauline Bondue,
  • Caroline Douny,
  • Bernard Taminiau,
  • Georges Daube,
  • Marie-Louise Scippo and
  • Véronique Delcenserie

30 June 2022

Functional symbiotic intestinal microbiota regulates immune defense and the metabolic processing of xenobiotics in the host. The aryl hydrocarbon receptor (AhR) is one of the transcription factors mediating host–microbe interaction. An in vitro...

  • Review
  • Open Access
1 Citations
1,687 Views
26 Pages

The gut microbiota of Drosophila melanogaster offers a simplified yet powerful system to study conserved mechanisms of host–microbe interactions. Unlike the highly complex mammalian gut microbiota, which includes hundreds of species, the fly gu...

  • Article
  • Open Access
1 Citations
3,542 Views
12 Pages

Host–Microbe Interactions in Healthy and CSOM-Affected Middle Ears

  • Michel Neeff,
  • Wandia Kimita,
  • Sharon Waldvogel-Thurlow,
  • Richard G. Douglas and
  • Kristi Biswas

Chronic suppurative otitis media (CSOM) is a chronic middle ear inflammatory condition due to persistent polymicrobial middle ear infection. The interaction between local immune responses and microbial communities is not well understood, complicating...

  • Review
  • Open Access
7,588 Views
13 Pages

Caenorhabditis elegans as a Convenient Animal Model for Microbiome Studies

  • Cheng-Yeu Wu,
  • Scott Davis,
  • Neekita Saudagar,
  • Shrey Shah,
  • William Zhao,
  • Arnold Stern,
  • Jan Martel,
  • David Ojcius and
  • Hung-Chi Yang

Microbes constitute the most prevalent life form on Earth, yet their remarkable diversity remains mostly unrecognized. Microbial diversity in vertebrate models presents a significant challenge for investigating host–microbiome interactions. The...

  • Article
  • Open Access
53 Citations
9,552 Views
24 Pages

Gut Mucosal Proteins and Bacteriome Are Shaped by the Saturation Index of Dietary Lipids

  • Nijiati Abulizi,
  • Candice Quin,
  • Kirsty Brown,
  • Yee Kwan Chan,
  • Sandeep K. Gill and
  • Deanna L. Gibson

16 February 2019

The dynamics of the tripartite relationship between the host, gut bacteria and diet in the gut is relatively unknown. An imbalance between harmful and protective gut bacteria, termed dysbiosis, has been linked to many diseases and has most often been...

  • Article
  • Open Access
5 Citations
5,817 Views
21 Pages

Multiomics Profiling Reveals Signatures of Dysmetabolism in Urban Populations in Central India

  • Tanya M. Monaghan,
  • Rima N. Biswas,
  • Rupam R. Nashine,
  • Samidha S. Joshi,
  • Benjamin H. Mullish,
  • Anna M. Seekatz,
  • Jesus Miguens Blanco,
  • Julie A. K. McDonald,
  • Julian R. Marchesi and
  • Tung on Yau
  • + 13 authors

Background: Non-communicable diseases (NCDs) have become a major cause of morbidity and mortality in India. Perturbation of host–microbiome interactions may be a key mechanism by which lifestyle-related risk factors such as tobacco use, alcohol consu...

  • Review
  • Open Access
33 Citations
12,685 Views
16 Pages

27 June 2016

The human intestine is a dynamic organ where the complex host-microbe interactions that orchestrate intestinal homeostasis occur. Major contributing factors associated with intestinal health and diseases include metabolically-active gut microbiota, i...

  • Review
  • Open Access
149 Citations
12,463 Views
13 Pages

The Lung Microbiome during Health and Disease

  • Kazuma Yagi,
  • Gary B. Huffnagle,
  • Nicholas W. Lukacs and
  • Nobuhiro Asai

8 October 2021

Healthy human lungs have traditionally been considered to be a sterile organ. However, culture-independent molecular techniques have reported that large numbers of microbes coexist in the lung and airways. The lungs harbor diverse microbial compositi...

  • Review
  • Open Access
2 Citations
3,608 Views
10 Pages

8 February 2024

Celiac disease is an autoimmune disease triggered by dietary gluten in genetically susceptible individuals that primarily affects the small intestinal mucosa. The sole treatment is a gluten-free diet that places a social and economic burden on patien...

  • Review
  • Open Access
32 Citations
5,916 Views
13 Pages

13 February 2021

Bioinspired organ-level in vitro platforms that recapitulate human organ physiology and organ-specific responses have emerged as effective technologies for infectious disease research, drug discovery, and personalized medicine. A major challenge in t...

  • Review
  • Open Access
6 Citations
5,628 Views
14 Pages

Porcine Intestinal Organoids: Overview of the State of the Art

  • Panpan Ma,
  • Puxian Fang,
  • Tianze Ren,
  • Liurong Fang and
  • Shaobo Xiao

21 May 2022

The intestinal tract is a crucial part of the body for growth and development, and its dysregulation can cause several diseases. The lack of appropriate in vitro models hampers the development of effective preventions and treatments against these int...

  • Review
  • Open Access
52 Citations
7,779 Views
25 Pages

The Blood Microbiome and Health: Current Evidence, Controversies, and Challenges

  • Hong Sheng Cheng,
  • Sin Pei Tan,
  • David Meng Kit Wong,
  • Wei Ling Yolanda Koo,
  • Sunny Hei Wong and
  • Nguan Soon Tan

Blood is conventionally thought to be sterile. However, emerging evidence on the blood microbiome has started to challenge this notion. Recent reports have revealed the presence of genetic materials of microbes or pathogens in the blood circulation,...

  • Article
  • Open Access
7 Citations
2,671 Views
12 Pages

8 July 2023

With the birth of next-generation sequencing (NGS) technology, genomic data in public databases have increased exponentially. Unfortunately, exogenous contamination or intracellular parasite sequences in assemblies could confuse genomic analysis. Mea...

  • Review
  • Open Access
879 Views
16 Pages

31 October 2025

Chlamydia trachomatis (CT) remains the most commonly reported bacterial sexually transmitted infection (STI) globally, with particularly high incidence among adolescents and young adults. In Europe, CT cases have continued to rise over the past decad...

  • Review
  • Open Access
32 Citations
5,583 Views
14 Pages

19 February 2021

Symbiosis between microbes and insects has been raised as a promising area for understanding biological implications of microbe–host interactions. Among them, the association between fungi and bark beetles has been generally recognized as essential f...

  • Article
  • Open Access
16 Citations
6,455 Views
29 Pages

1 October 2018

Members of the genus Bifidobacterium are found in a wide-range of habitats and are used as important probiotics. Thus, exploration of their functional traits at the genus level is of utmost significance. Besides, this genus has been demonstrated to e...

  • Review
  • Open Access
1,459 Views
44 Pages

Lactobacilli-Derived Microbe-Associated Molecular Patterns (MAMPs) in Host Immune Modulation

  • Salvatore Furnari,
  • Ruben Ciantia,
  • Adriana Garozzo,
  • Pio Maria Furneri and
  • Virginia Fuochi

17 November 2025

Although traditionally sidelined by live probiotic effects, Lactobacilli-derived Microbe-Associated Molecular Patterns (MAMPs) are emerging as potent modulators of innate and adaptive immune responses, capable of acting independently of bacterial via...

  • Review
  • Open Access
1 Citations
3,010 Views
20 Pages

The Ecological–Evolutionary Game of the Insect Gut Microbiome: Environmental Drivers, Host Regulation, and Prospects for Cross-Cutting Applications

  • Ying Wang,
  • Jie Tang,
  • Yao Chen,
  • Shuyi Chen,
  • Sumin Chen,
  • Xin Yu,
  • Caijing Wan,
  • Guoqi Xiang,
  • Yaping Chen and
  • Qiang Li

5 September 2025

The insect gut contains a complex and diverse microbial community, and the composition of the insect gut microbial community is influenced by multiple factors such as the host’s genetics, dietary habits, and the external environment. The host&r...

  • Article
  • Open Access
343 Views
15 Pages

Modulation of Dextran Sodium Sulfate-Induced Colitis in Germ-Free Mice by Enterococcus faecalis Monocolonization

  • Beate Vestad,
  • Petra Hanzely,
  • Indrė Karaliūtė,
  • Oda Ramberg,
  • Jurgita Skiecevičienė,
  • Rokas Lukoševičius,
  • Jørgen V. Bjørnholt,
  • Kristian Holm,
  • Juozas Kupčinskas and
  • Henrik Rasmussen
  • + 2 authors

Inflammatory bowel diseases (IBDs), including Crohn’s disease and ulcerative colitis (UC), are characterized by chronic gastrointestinal inflammation and involve complex interactions of genetic, environmental, and immune factors. Enterococcus f...

  • Article
  • Open Access
1 Citations
1,457 Views
20 Pages

To date, Leucobacter species have been identified from diverse sources with various ecological and functional roles. However, the genomic features and pathogenic potential of antibiotic-resistant Leucobacter strains remain understudied. Here, we isol...

  • Article
  • Open Access
40 Citations
8,830 Views
15 Pages

Novel Plant-Associated Acidobacteria Promotes Growth of Common Floating Aquatic Plants, Duckweeds

  • Yasuko Yoneda,
  • Kyosuke Yamamoto,
  • Ayaka Makino,
  • Yasuhiro Tanaka,
  • Xian-Ying Meng,
  • Junko Hashimoto,
  • Kazuo Shin-ya,
  • Noriyuki Satoh,
  • Manabu Fujie and
  • Tadashi Toyama
  • + 5 authors

Duckweeds are small, fast growing, and starch- and protein-rich aquatic plants expected to be a next generation energy crop and an excellent biomaterial for phytoremediation. Despite such an importance, very little is known about duckweed–microbe int...

  • Review
  • Open Access
32 Citations
7,942 Views
18 Pages

Exploring the Ecology of Bifidobacteria and Their Genetic Adaptation to the Mammalian Gut

  • Sabrina Duranti,
  • Giulia Longhi,
  • Marco Ventura,
  • Douwe van Sinderen and
  • Francesca Turroni

The mammalian gut is densely inhabited by microorganisms that have coevolved with their host. Amongst these latter microorganisms, bifidobacteria represent a key model to study host–microbe interaction within the mammalian gut. Remarkably, bifi...

  • Review
  • Open Access
21 Citations
6,700 Views
12 Pages

Commercial poultry are continually exposed to, frequently pathogenic, microorganisms, usually via mucosal surfaces such as the intestinal mucosa. Thus, understanding host–microbe interactions is vital. Many of these microorganisms may have no o...

  • Article
  • Open Access
10 Citations
3,465 Views
19 Pages

Mucosal Metabolomic Signatures in Chronic Colitis: Novel Insights into the Pathophysiology of Inflammatory Bowel Disease

  • Nathan Calzadilla,
  • Aisha Qazi,
  • Anchal Sharma,
  • Kai Mongan,
  • Shane Comiskey,
  • Jahnavi Manne,
  • Alvin G. Youkhana,
  • Sonam Khanna,
  • Seema Saksena and
  • Pradeep K. Dudeja
  • + 2 authors

Inflammatory bowel diseases (IBD) involve complex interactions among genetic factors, aberrant immune activation, and gut microbial dysbiosis. While metabolomic studies have focused on feces and serum, fewer investigations have examined the intestina...

  • Review
  • Open Access
15 Citations
4,390 Views
9 Pages

Atopic dermatitis (AD) is a condition with a complex and unclear aetiology. Possible causes of AD encompass alterations in the structure and function of the epidermal barrier, disturbances in the skin microbiome, immune factors, allergens, bacterial...

  • Review
  • Open Access
865 Views
25 Pages

27 November 2025

The rapid industrialization of global livestock production has intensified the threat of viral epidemics, in which the intestinal, respiratory, and reproductive systems are susceptible to viral attacks. Understanding the mechanism of virus–host...

  • Article
  • Open Access
1 Citations
2,647 Views
14 Pages

Usage of Cultured Human Fecal Microbiota for Colonization of Caenorhabditis elegans to Study Host–Microbe Interaction

  • Katrine V. Møller,
  • Jonas Bruhn Wesseltoft,
  • Richelle Malazarte,
  • Sabrina J. Kousgaard,
  • Hans L. Nielsen,
  • Erika Yashiro and
  • Anders Olsen

28 September 2023

The role of the microbiota in health and disease is a research area receiving much attention in academia and industry. A person’s microbiota refers to a community of microorganisms found mainly in the gut. It is estimated that around 39 trillio...

  • Article
  • Open Access
7 Citations
3,675 Views
16 Pages

Active Fungal Communities in Asymptomatic Eucalyptus grandis Stems Differ between a Susceptible and Resistant Clone

  • Mandy Messal,
  • Bernard Slippers,
  • Sanushka Naidoo,
  • Oliver Bezuidt and
  • Martin Kemler

Fungi represent a common and diverse part of the microbial communities that associate with plants. They also commonly colonise various plant parts asymptomatically. The molecular mechanisms of these interactions are, however, poorly understood. In th...

  • Article
  • Open Access
44 Citations
4,614 Views
15 Pages

Differential Profiles of Gut Microbiota and Metabolites Associated with Host Shift of Plutella xylostella

  • Fei-Ying Yang,
  • Hafiz Sohaib Ahmed Saqib,
  • Jun-Hui Chen,
  • Qian-Qian Ruan,
  • Liette Vasseur,
  • Wei-Yi He and
  • Min-Sheng You

30 August 2020

Evolutionary and ecological forces are important factors that shape gut microbial profiles in hosts, which can help insects adapt to different environments through modulating their metabolites. However, little is known about how gut microbes and meta...

  • Review
  • Open Access
2 Citations
2,206 Views
12 Pages

The Silent Conversation: How Small RNAs Shape Plant–Microbe Relationships

  • Jie Liu,
  • Yuntong Lu,
  • Xiaoyan Chen,
  • Xing Liu,
  • Yunying Gu and
  • Fei Li

This review highlights the emerging role of cross-kingdom RNA interference in plant–microbe interactions, particularly the transfer of sRNAs from microbes to plants and vice versa, emphasizing the importance of this mechanism in both mutualisti...

  • Review
  • Open Access
412 Views
21 Pages

13 December 2025

Trichomoniasis is the most common non-viral sexually transmitted infection in humans, with over 200 million people affected each year. This disease is associated with pre-term birth, low birth weight, and premature membrane rupture. Its causal pathog...

  • Review
  • Open Access
162 Citations
12,588 Views
22 Pages

24 September 2014

In recent years, the increase in human microbiome research brought about by the rapidly evolving “omic” technologies has established that the balance among the microbial groups present in the human gut, and their multipronged interactions with the ho...

  • Article
  • Open Access
8 Citations
4,869 Views
18 Pages

Allogenic Faecal Microbiota Transfer Induces Immune-Related Gene Sets in the Colon Mucosa of Patients with Irritable Bowel Syndrome

  • Savanne Holster,
  • Guido J. Hooiveld,
  • Dirk Repsilber,
  • Willem M. de Vos,
  • Robert J. Brummer and
  • Julia König

8 October 2019

Faecal microbiota transfer (FMT) consists of the introduction of new microbial communities into the intestine of a patient, with the aim of restoring a disturbed gut microbiota. Even though it is used as a potential treatment for various diseases, it...

  • Review
  • Open Access
33 Citations
8,583 Views
12 Pages

The human gastrointestinal (GI) tract is a highly complex organ in which various dynamic physiological processes are tightly coordinated while interacting with a complex community of microorganisms. Within the GI tract, intestinal epithelial cells (I...

  • Review
  • Open Access
172 Citations
29,702 Views
29 Pages

Propionibacterium acnes and Acne Vulgaris: New Insights from the Integration of Population Genetic, Multi-Omic, Biochemical and Host-Microbe Studies

  • Joseph McLaughlin,
  • Steven Watterson,
  • Alison M. Layton,
  • Anthony J. Bjourson,
  • Emma Barnard and
  • Andrew McDowell

The anaerobic bacterium Propionibacterium acnes is believed to play an important role in the pathophysiology of the common skin disease acne vulgaris. Over the last 10 years our understanding of the taxonomic and intraspecies diversity of this bacter...

  • Article
  • Open Access
25 Citations
8,730 Views
23 Pages

This study was aimed at exploring seed transmission of endophytic bacteria in tomato utilizing aseptic in vitro conditions. Cultivation-based studies were undertaken on two tomato cultivars “Arka Vikas” and “Arka Abha” employi...

  • Review
  • Open Access
19 Citations
4,791 Views
18 Pages

WORKbiota: A Systematic Review about the Effects of Occupational Exposure on Microbiota and Workers’ Health

  • Nicola Mucci,
  • Eleonora Tommasi,
  • Annarita Chiarelli,
  • Lucrezia Ginevra Lulli,
  • Veronica Traversini,
  • Raymond Paul Galea and
  • Giulio Arcangeli

The characterization of human microbiota and the impact of its modifications on the health of individuals represent a current topic of great interest for the world scientific community. Scientific evidence is emerging regarding the role that microbio...

  • Review
  • Open Access
39 Citations
14,927 Views
34 Pages

30 September 2014

Marine sponges harbour complex microbial communities of ecological and biotechnological importance. Here, we propose the application of the widespread sponge family Irciniidae as an appropriate model in microbiology and biochemistry research. Half a...

  • Article
  • Open Access
14 Citations
3,461 Views
16 Pages

Oral Microbiota of Children Is Conserved across Han, Tibetan and Hui Groups and Is Correlated with Diet and Gut Microbiota

  • Ke Liu,
  • Siyu Chen,
  • Jing Huang,
  • Feihong Ren,
  • Tingyu Yang,
  • Danfeng Long,
  • Huan Li and
  • Xiaodan Huang

The oral microbiota can be affected by several factors; however, little is known about the relationship between diet, ethnicity and commensal oral microbiota among school children living in close geographic proximity. In addition, the relationship be...

  • Review
  • Open Access
112 Citations
12,701 Views
16 Pages

30 January 2021

After their synthesis from cholesterol in hepatic tissues, bile acids (BAs) are secreted into the intestinal lumen. Most BAs are subsequently re-absorbed in the terminal ileum and are transported back for recycling to the liver. Some of them, however...

  • Review
  • Open Access
39 Citations
11,434 Views
30 Pages

Microbiota and Immunity during Respiratory Infections: Lung and Gut Affair

  • Veronica Marrella,
  • Federico Nicchiotti and
  • Barbara Cassani

Bacterial and viral respiratory tract infections are the most common infectious diseases, leading to worldwide morbidity and mortality. In the past 10 years, the importance of lung microbiota emerged in the context of pulmonary diseases, although the...

  • Review
  • Open Access
6 Citations
2,559 Views
16 Pages

Residents or Tourists: Is the Lactating Mammary Gland Colonized by Residential Microbiota?

  • Ruomei Xu,
  • Grace McLoughlin,
  • Mark Nicol,
  • Donna Geddes and
  • Lisa Stinson

The existence of the human milk microbiome has been widely recognized for almost two decades, with many studies examining its composition and relationship to maternal and infant health. However, the richness and viability of the human milk microbiota...

  • Feature Paper
  • Review
  • Open Access
69 Citations
11,409 Views
44 Pages

25 June 2023

The seminal discovery of paclitaxel from endophytic fungus Taxomyces andreanae was a milestone in recognizing the immense potential of endophytic fungi as prolific producers of bioactive secondary metabolites of use in medicine, agriculture, and food...

  • Review
  • Open Access
16 Citations
5,448 Views
25 Pages

6 October 2023

Extracellular vesicles (EVs) are membranous vesicular organelles that perform a variety of biological functions including cell communication across different biological kingdoms. EVs of mammals and, to a lesser extent, bacteria have been deeply studi...

  • Article
  • Open Access
78 Citations
10,925 Views
21 Pages

Fructose-Induced Intestinal Microbiota Shift Following Two Types of Short-Term High-Fructose Dietary Phases

  • Julia Beisner,
  • Anita Gonzalez-Granda,
  • Maryam Basrai,
  • Antje Damms-Machado and
  • Stephan C. Bischoff

10 November 2020

High consumption of fructose and high-fructose corn syrup is related to the development of obesity-associated metabolic diseases, which have become the most relevant diet-induced diseases. However, the influences of a high-fructose diet on gut microb...

  • Article
  • Open Access
6 Citations
3,547 Views
20 Pages

Escherichia coli O157:H7 F9 Fimbriae Recognize Plant Xyloglucan and Elicit a Response in Arabidopsis thaliana

  • Ashleigh Holmes,
  • Yannick Rossez,
  • Kathryn Mary Wright,
  • Pete Edward Hedley,
  • Jenny Morris,
  • William George Tycho Willats and
  • Nicola Jean Holden

19 December 2020

Fresh produce is often a source of enterohaemorrhagic Escherichia coli (EHEC) outbreaks. Fimbriae are extracellular structures involved in cell-to-cell attachment and surface colonisation. F9 (Fml) fimbriae have been shown to be expressed at temperat...

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