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117 Results Found

  • Article
  • Open Access
3 Citations
5,608 Views
17 Pages

Coral reefs are undergoing a severe decline due to ocean acidification, seawater warming and anthropogenic eutrophication. We demonstrate the applicability of Deep Learning (DL) for following these changes. We examined the distribution and frequency...

  • Article
  • Open Access
13 Citations
8,731 Views
32 Pages

Deep-Reef Fish Communities of the Great Barrier Reef Shelf-Break: Trophic Structure and Habitat Associations

  • Tiffany L. Sih,
  • James J. Daniell,
  • Thomas C.L. Bridge,
  • Robin J. Beaman,
  • Mike Cappo and
  • Michael J. Kingsford

20 February 2019

The ecology of habitats along the Great Barrier Reef (GBR) shelf-break has rarely been investigated. Thus, there is little understanding of how associated fishes interact with deeper environments. We examined relationships between deep-reef fish comm...

  • Article
  • Open Access
12 Citations
5,910 Views
15 Pages

Deep Heat: A Comparison of Water Temperature, Anemone Bleaching, Anemonefish Density and Reproduction between Shallow and Mesophotic Reefs

  • Anne Haguenauer,
  • Frédéric Zuberer,
  • Gilles Siu,
  • Daphne Cortese,
  • Ricardo Beldade and
  • Suzanne C. Mills

9 September 2021

French Polynesia is experiencing increasing coral bleaching events in shallow waters triggered by thermal anomalies and marine heatwaves linked to climate change, a trend that is replicated worldwide. As sea surface thermal anomalies are assumed to l...

  • Article
  • Open Access
1 Citations
4,385 Views
17 Pages

Developing Mobile Applications with Augmented Reality and 3D Photogrammetry for Visualisation of Cold-Water Coral Reefs and Deep-Water Habitats

  • Larissa Macedo Cruz de Oliveira,
  • Priscila Almeida de Oliveira,
  • Aaron Lim,
  • Andrew J. Wheeler and
  • Luis Americo Conti

26 September 2022

Cold-water coral (CWC) reefs are considered “hotspots” of biodiversity in deep-sea environments. Like tropical coral reefs, these habitats are subject to climate and anthropogenic threats. The use of remotely operated vehicles (ROVSs) in...

  • Article
  • Open Access
3 Citations
3,378 Views
15 Pages

Mapping Ecological Units in Mesophotic Coral Ecosystems of San Andrés Island (Southwestern Caribbean)

  • Katherine Mejía-Quintero,
  • Cristina Cedeño-Posso,
  • Santiago Millán and
  • Luis Chasqui

19 August 2022

To map ecological units in mesophotic coral ecosystems on the western side of San Andrés Island (Colombia) considering biotic components and geomorphic zonation among 30–140 m deep, 27 video transects were done using an ROV. In total, 14...

  • Editorial
  • Open Access
23 Citations
4,470 Views
4 Pages

28 October 2020

Mesophotic ecosystems (MEs) are characterized by the presence of light-dependent organisms, found at depths ranging from ~30 to 150 m in temperate, subtropical and tropical regions. These communities occasionally create massive reef structures with d...

  • Article
  • Open Access
26 Citations
12,192 Views
28 Pages

29 May 2022

Seagrass meadows are a key ecosystem of the Great Barrier Reef World Heritage Area, providing one of the natural heritage attributes underpinning the reef’s outstanding universal value. We reviewed approaches employed to date to create maps of...

  • Article
  • Open Access
16 Citations
4,754 Views
20 Pages

28 July 2023

Corals play a crucial role as the primary habitat-building organisms within reef ecosystems, forming expansive structures that extend over vast distances, akin to the way tall buildings define a city’s skyline. However, coral reefs are vulnerab...

  • Review
  • Open Access
39 Citations
9,766 Views
18 Pages

Neural Network Recognition of Marine Benthos and Corals

  • Alina Raphael,
  • Zvy Dubinsky,
  • David Iluz and
  • Nathan S. Netanyahu

13 January 2020

We present thorough this review the developments in the field, point out their current limitations, and outline its timelines and unique potential. In order to do so we introduce the methods used in each of the advances in the application of deep lea...

  • Article
  • Open Access
1 Citations
1,778 Views
20 Pages

Coral islands and reefs are formed by the cementation of the remains of shallow water reef-building coral polyps and other reef dwelling organisms in tropical oceans. They can be divided into coral islands, coral sandbanks, coral reefs, and coral sho...

  • Article
  • Open Access
1 Citations
647 Views
40 Pages

Coral-YOLO: An Intelligent Optical Vision Sensing Framework for High-Fidelity Marine Habitat Monitoring and Forecasting

  • Jun Tao,
  • Hongjun Tian,
  • Shuai Huang,
  • Yuhan Ye,
  • Yang Xiong,
  • Shijie Huang,
  • Jingbo Qin,
  • Yijie Yin,
  • Jiesen Zhang and
  • Jiani Wu
  • + 1 author

29 November 2025

Coral reefs are facing a catastrophic decline due to climate-induced bleaching, threatening critical marine biodiversity. Automated, large-scale monitoring is essential; however, modern object detectors are hindered by two fundamental limitations in...

  • Article
  • Open Access
30 Citations
7,754 Views
16 Pages

Combining Drones and Deep Learning to Automate Coral Reef Assessment with RGB Imagery

  • Anna Barbara Giles,
  • Keven Ren,
  • James Edward Davies,
  • David Abrego and
  • Brendan Kelaher

23 April 2023

Coral reefs and their associated marine communities are increasingly threatened by anthropogenic climate change. A key step in the management of climate threats is an efficient and accurate end-to-end system of coral monitoring that can be generally...

  • Feature Paper
  • Article
  • Open Access
15 Citations
7,027 Views
14 Pages

The Differential Importance of Deep and Shallow Seagrass to Nekton Assemblages of the Great Barrier Reef

  • Matthew A. Hayes,
  • Eva C. McClure,
  • Paul H. York,
  • Kristin I. Jinks,
  • Michael A. Rasheed,
  • Marcus Sheaves and
  • Rod M. Connolly

27 July 2020

Seagrass meadows are an important habitat for a variety of animals, including ecologically and socioeconomically important species. Seagrass meadows are recognised as providing species with nursery grounds, and as a migratory pathway to adjacent habi...

  • Article
  • Open Access
6 Citations
3,682 Views
16 Pages

2 November 2024

Coral reefs are vital to marine biodiversity but are increasingly threatened by global climate change and human activities, leading to significant declines in live coral cover (LCC). Monitoring LCC is crucial for assessing the health of coral reef ec...

  • Feature Paper
  • Article
  • Open Access
18 Citations
8,431 Views
19 Pages

16 April 2021

Sea cucumbers (Holothuroidea or holothurians) are a valuable fishery and are also crucial nutrient recyclers, bioturbation agents, and hosts for many biotic associates. Their ecological impacts could be substantial given their high abundance in some...

  • Article
  • Open Access
2 Citations
2,596 Views
27 Pages

29 August 2024

Livestock grazing is a major land use in the Great Barrier Reef Catchment Area (GBRCA). Heightened grazing density coupled with inadequate land management leads to accelerated soil erosion and increased sediment loads being transported downstream. Ul...

  • Article
  • Open Access
4 Citations
3,596 Views
16 Pages

Phylogeography of Mesophotic Coral Ecosystems: Squirrelfish and Soldierfish (Holocentriformes: Holocentridae)

  • Joshua M. Copus,
  • Cameron A. J. Walsh,
  • Mykle L. Hoban,
  • Anne M. Lee,
  • Richard L. Pyle,
  • Randall K. Kosaki,
  • Robert J. Toonen and
  • Brian W. Bowen

21 August 2022

Mesophotic coral ecosystems (MCEs: ~30 to 100+ m depth) may be older and more stable than shallow coral ecosystems that are more prone to disturbances in both the long term (glacial sea level cycles) and short term (heavy weather and anthropogenic ac...

  • Article
  • Open Access
12 Citations
2,964 Views
17 Pages

Artificial Reef Detection Method for Multibeam Sonar Imagery Based on Convolutional Neural Networks

  • Zhipeng Dong,
  • Yanxiong Liu,
  • Long Yang,
  • Yikai Feng,
  • Jisheng Ding and
  • Fengbiao Jiang

15 September 2022

Artificial reef detection in multibeam sonar images is an important measure for the monitoring and assessment of biological resources in marine ranching. With respect to how to accurately detect artificial reefs in multibeam sonar images, this paper...

  • Article
  • Open Access
2 Citations
2,632 Views
17 Pages

Coral segmentation poses unique challenges due to its irregular morphology and camouflage-like characteristics. These factors often result in low precision, large model parameters, and poor real-time performance. To address these issues, this paper p...

  • Article
  • Open Access
22 Citations
4,973 Views
21 Pages

On Improving the Training of Models for the Semantic Segmentation of Benthic Communities from Orthographic Imagery

  • Gaia Pavoni,
  • Massimiliano Corsini,
  • Marco Callieri,
  • Giuseppe Fiameni,
  • Clinton Edwards and
  • Paolo Cignoni

22 September 2020

The semantic segmentation of underwater imagery is an important step in the ecological analysis of coral habitats. To date, scientists produce fine-scale area annotations manually, an exceptionally time-consuming task that could be efficiently automa...

  • Interesting Images
  • Open Access
12 Citations
3,439 Views
7 Pages

One on Top of the Other: Exploring the Habitat Cascades Phenomenon in Iconic Biogenic Marine Habitats

  • Georgios Kazanidis,
  • Adriano Guido,
  • Antonietta Rosso,
  • Rossana Sanfilippo,
  • J. Murray Roberts and
  • Vasilis Gerovasileiou

12 April 2022

Biogenic habitats often form hot spots of biodiversity. However, the role of epibiosis and the ‘habitat cascades’ phenomenon in enhancing structural heterogeneity and biodiversity in biogenic habitats in remote and difficult-to-access are...

  • Review
  • Open Access
38 Citations
8,785 Views
34 Pages

Machine-Learning for Mapping and Monitoring Shallow Coral Reef Habitats

  • Christopher Burns,
  • Barbara Bollard and
  • Ajit Narayanan

2 June 2022

Mapping and monitoring coral reef benthic composition using remotely sensed imagery provides a large-scale inference of spatial and temporal dynamics. These maps have become essential components in marine science and management, with their utility be...

  • Conference Report
  • Open Access
3,152 Views
16 Pages

6 June 2022

Given the global threats towards coral reefs, this conference’s central theme, “Reef coral biotechnology”, is particularly timely. Our goal is to promote communication and dialogue in this field among marine researchers within and o...

  • Article
  • Open Access
1,033 Views
20 Pages

YOLO-AR: An Improved Artificial Reef Segmentation Algorithm Based on YOLOv11

  • Yuxiang Wu,
  • Tingchen Jiang,
  • Zhi Xi,
  • Fei Yin and
  • Xiuping Wang

2 September 2025

Artificial reefs serve as a crucial measure for preventing habitat degradation, enhancing primary productivity in marine areas, and restoring and increasing fishery resources, making them an essential component of marine ranching development. Accurat...

  • Article
  • Open Access
4 Citations
3,317 Views
24 Pages

29 April 2023

In 2020 marine heatwaves elicited severe bleaching on many of Earth’s coral reefs. We compared coral reef benthic community composition before (April 2020), during (September 2020), and after (December 2020–September 2021) this event at f...

  • Article
  • Open Access
7 Citations
7,372 Views
22 Pages

16 November 2018

The Upper Permian Changhsingian Jiantissanba reef complex is a well-known platform marginal reef, located in the western Hubei Province, China. Based on field observations and lithological analysis of the entire exposed reef complex, 12 reef facies h...

  • Review
  • Open Access
5 Citations
8,442 Views
21 Pages

Coral Reef Surveillance with Machine Learning: A Review of Datasets, Techniques, and Challenges

  • Abdullahi Chowdhury,
  • Musfera Jahan,
  • Shahriar Kaisar,
  • Mahbub E. Khoda,
  • S M Ataul Karim Rajin and
  • Ranesh Naha

20 December 2024

Climate change poses a significant threat to our planet, particularly affecting intricate marine ecosystems like coral reefs. These ecosystems are crucial for biodiversity and serve as indicators of the overall health of our oceans. To better underst...

  • Article
  • Open Access
11 Citations
4,065 Views
21 Pages

Comparing Seamounts and Coral Reefs with eDNA and BRUVS Reveals Oases and Refuges on Shallow Seamounts

  • Florian Baletaud,
  • Gaël Lecellier,
  • Antoine Gilbert,
  • Laëtitia Mathon,
  • Jean-Marie Côme,
  • Tony Dejean,
  • Mahé Dumas,
  • Sylvie Fiat and
  • Laurent Vigliola

17 November 2023

Seamounts are the least known ocean biome. Considered biodiversity hotspots, biomass oases, and refuges for megafauna, large gaps exist in their real diversity relative to other ecosystems like coral reefs. Using environmental DNA metabarcoding (eDNA...

  • Article
  • Open Access
3 Citations
3,200 Views
15 Pages

19 September 2021

Biogenic reefs and carbonate platforms are valuable natural resources, playing an important role in modulating the global climate and in carbon cycles through biological processes. Biogenic reefs in the Xisha (Paracel) Islands began in the late Oligo...

  • Article
  • Open Access
8 Citations
6,776 Views
13 Pages

Severe Heat Stress Resulted in High Coral Mortality on Maldivian Reefs following the 2015–2016 El Niño Event

  • Pia Bessell-Browne,
  • Hannah E. Epstein,
  • Nora Hall,
  • Patrick Buerger and
  • Kathryn Berry

3 March 2021

Coral cover worldwide has been declining due to heat stress caused by climate change. Here we report the impacts of the 2015–2016 El Niño mass coral bleaching event on the coral cover of reefs located on central and northern atolls of the Maldives. W...

  • Article
  • Open Access
23 Citations
5,509 Views
13 Pages

5 March 2020

Oysters are important ecosystem engineers best known to produce large bioconstructions at shallow depth, whilst offshore deep-subtidal oyster reefs are less widely known. Oyster reefs engineered by Neopycnodonte cochlear (family Gryphaeidae) occur at...

  • Article
  • Open Access
1 Citations
1,573 Views
27 Pages

Microfacies Characteristics of Late Pennsylvanian Cyclothems on the Carbonate Platform Margin in Guizhou, South China

  • Junjie Wang,
  • Enpu Gong,
  • Yongli Zhang,
  • Xiao Li,
  • Lifu Wang,
  • Guanming Lai and
  • Depeng Li

16 November 2024

Late Pennsylvanian cyclothems are documented from the carbonate platform margin in Guizhou, South China, providing a unique opportunity to study glacio-eustatic fluctuations and their impact on reef development. This paper focuses on a shallow-water,...

  • Review
  • Open Access
13 Citations
5,634 Views
37 Pages

Review of Methods to Repair and Maintain Lithophilic Fish Spawning Habitat

  • Audrey Baetz,
  • Taaja R. Tucker,
  • Robin L. DeBruyne,
  • Alex Gatch,
  • Tomas Höök,
  • Jason L. Fischer and
  • Edward F. Roseman

8 September 2020

Rocky reefs provide important spawning and refuge habitats for lithophilic spawning fishes. However, many reefs have been lost or severely degraded through anthropogenic effects like dredging, channelization, or sedimentation. Constructed reefs have...

  • Article
  • Open Access
268 Views
16 Pages

The Strike–Slip Fault Effect on a Reef–Shoal Reservoir in the Northern Sichuan Basin

  • Yinyu Wen,
  • Guanghui Wu,
  • Jiawei Liu,
  • Xiaoxu Liu,
  • Bing He,
  • Chen Su and
  • Youliang Yu

7 December 2025

Understanding the influence of strike–slip faulting on deep carbonate reservoirs remains challenging. This study integrates core observations, well logging, and seismic interpretation to investigate fracture diagenesis and evaluate the impact o...

  • Article
  • Open Access
18 Citations
8,525 Views
23 Pages

21 March 2019

Many coral reef systems are shelf-based and consist of reefs that are arranged in rows parallel to the coastline. They usually show an increase in species richness in the offshore direction, coinciding with decreasing terrigenous impact and a deeper...

  • Article
  • Open Access
1,419 Views
22 Pages

27 October 2025

In the dynamic and increasingly threatened marine environment, understanding the full spatial ecology of species like the reef manta ray (Mobula alfredi) is crucial for effective conservation. While typically considered a shallow-water species, reef...

  • Article
  • Open Access
9 Citations
6,066 Views
28 Pages

19 January 2023

Coral-reefs are a significant species in marine life, which are affected by multiple diseases due to the stress and variation in heat under the impact of the ocean. The autonomous monitoring and detection of coral health are crucial for researchers t...

  • Article
  • Open Access
500 Views
22 Pages

Investigation of Coral Reefs for Coastal Protection: Hydrodynamic Insights and Sustainable Flow Energy Reduction

  • Faisal Karim,
  • Napayalage A. K. Nandasena,
  • James P. Terry,
  • Mohamed M. Mohamed and
  • Zhonghou Xu

8 December 2025

Coral reefs are integral components of tropical coastal marine ecosystems that have considerable capacity to mitigate extreme flows and marine floods caused by storms and tsunamis. However, limited studies on coral reef efficacy in reducing such flow...

  • Article
  • Open Access
5 Citations
5,219 Views
21 Pages

11 April 2023

UNESCO estimates that our planet’s oceans and lakes are home to more than three million shipwrecks. Of these three million, the locations of only 10% are currently known. Apart from the historical and archaeological interest in finding wrecks,...

  • Article
  • Open Access
5 Citations
4,336 Views
21 Pages

Mesophotic Reefs of the Largest Brazilian Coastal Protected Area: Mapping, Characterization and Biodiversity

  • Pedro H. C. Pereira,
  • Gislaine V. Lima,
  • Julia C. Araujo,
  • Erandy Gomes,
  • Luís G. F. Côrtes,
  • Antonio V. Pontes,
  • Radharanne Recinos,
  • Andrei Cardoso,
  • José C. Seoane and
  • Camila C. P. Brito

15 September 2022

Mesophotic reefs are poorly known worldwide despite their great ecological relevance and management importance for coral reef conservation strategies. To aid in filling this gap, we conducted a pioneering, large-scale survey, covering a total of arou...

  • Interesting Images
  • Open Access
8 Citations
2,266 Views
4 Pages

A Red Sea Depth Record of the Coral-Dwelling Crab Opecarcinus (Decapoda: Cryptochiridae) in the Mesophotic Zone

  • Silvia Vimercati,
  • Sancia E. T. van der Meij,
  • Tullia I. Terraneo,
  • Giovanni Chimienti,
  • Fabio Marchese,
  • Ameer A. Eweida,
  • Sam J. Purkis,
  • Mattie Rodrigue and
  • Francesca Benzoni

31 May 2023

Coral-dwelling gall crabs (Cryptochiridae) are obligate symbionts of stony corals and occur on shallow and deep reefs across the tropical belt. The circumtropical genus Opecarcinus associates with Agariciidae corals, a dominant component of Mesophoti...

  • Article
  • Open Access
34 Citations
9,081 Views
15 Pages

Coral reefs are the sub-aqueous calcium carbonate structures collected by the invertebrates known as corals. The charm and beauty of coral reefs attract tourists, and they play a vital role in preserving biodiversity, ceasing coastal erosion, and pro...

  • Article
  • Open Access
9 Citations
4,577 Views
27 Pages

Impact to Coral Reef Populations at Hā‘ena and Pila‘a, Kaua‘i, Following a Record 2018 Freshwater Flood Event

  • Ku’ulei S. Rodgers,
  • Matthew P. Stefanak,
  • Anita O. Tsang,
  • Justin J. Han,
  • Andrew T. Graham and
  • Yuko O. Stender

5 February 2021

Many corals and reef-dwelling organisms are susceptible to the impacts of storm events, which are typically characterized by large inputs of freshwater, sediment, and nutrients. The majority of storm effects are focused on shallow, nearshore reef fla...

  • Article
  • Open Access
1 Citations
1,041 Views
16 Pages

Bacterial Community Composition and Its Relationship with Environmental Factors in the Artificial Reef Area for Marine Ranching in Changhai County

  • Jiamin Yan,
  • Xu Wei,
  • Liwei Si,
  • Zheng Zhang,
  • Jingsi Zhao,
  • Liyu Deng,
  • Tao Tian,
  • Qingxia Li,
  • Zengqiang Yin and
  • Zhongxin Wu

22 February 2025

In this study, samples were collected from different types of artificial fish reefs and prevention and control areas in the sea areas of the northern part of Da Changshan Island and the northeastern part of Xiao Changshan Island in the North Yellow S...

  • Article
  • Open Access
9 Citations
2,155 Views
14 Pages

The Strike-Slip Fault Effects on Tight Ordovician Reef-Shoal Reservoirs in the Central Tarim Basin (NW China)

  • Yawen Zhao,
  • Guanghui Wu,
  • Yintao Zhang,
  • Nicola Scarselli,
  • Wei Yan,
  • Chong Sun and
  • Jianfa Han

9 March 2023

The largest carbonate condensate field in China has been found in the central Tarim Basin. Ordovician carbonate reservoirs are generally attributed to reef-shoal microfacies along a platform margin. However, recent production success has been achieve...

  • Article
  • Open Access
9 Citations
3,855 Views
18 Pages

Troubles Never Come Alone: Outcome of Multiple Pressures on a Temperate Rocky Reef

  • Annalisa Azzola,
  • Virginia Picchio,
  • Valentina Asnaghi,
  • Carlo Nike Bianchi,
  • Carla Morri,
  • Alice Oprandi and
  • Monica Montefalcone

20 February 2023

Climate change is affecting rocky reef ecosystems in a multitude of ways at global scale. During summer 2018, the rocky reef communities of Portofino Marine Protected Area (MPA) (NW Mediterranean) were affected by thermal anomalies, a mucilaginous ev...

  • Article
  • Open Access
160 Citations
29,513 Views
22 Pages

Monitoring of Coral Reefs Using Artificial Intelligence: A Feasible and Cost-Effective Approach

  • Manuel González-Rivero,
  • Oscar Beijbom,
  • Alberto Rodriguez-Ramirez,
  • Dominic E. P. Bryant,
  • Anjani Ganase,
  • Yeray Gonzalez-Marrero,
  • Ana Herrera-Reveles,
  • Emma V. Kennedy,
  • Catherine J. S. Kim and
  • Ove Hoegh-Guldberg
  • + 10 authors

4 February 2020

Ecosystem monitoring is central to effective management, where rapid reporting is essential to provide timely advice. While digital imagery has greatly improved the speed of underwater data collection for monitoring benthic communities, image analysi...

  • Article
  • Open Access
5 Citations
5,358 Views
13 Pages

Investigation into the Presence of Symbiodiniaceae in Antipatharians (Black Corals)

  • Erika Gress,
  • Igor Eeckhaut,
  • Mathilde Godefroid,
  • Philippe Dubois,
  • Jonathan Richir and
  • Lucas Terrana

25 November 2021

Here, we report a new broad approach to investigating the presence and density of Symbiodiniaceae cells in corals of the order Antipatharia subclass Hexacorallia, commonly known as black corals. Antipatharians are understudied ecosystem engineers of...

  • Article
  • Open Access
32 Citations
10,475 Views
22 Pages

Bottom Reflectance in Ocean Color Satellite Remote Sensing for Coral Reef Environments

  • Martina Reichstetter,
  • Peter R. C. S. Fearns,
  • Scarla J. Weeks,
  • Lachlan I. W. McKinna,
  • Chris Roelfsema and
  • Miles Furnas

9 December 2015

Most ocean color algorithms are designed for optically deep waters, where the seafloor has little or no effect on remote sensing reflectance. This can lead to inaccurate retrievals of inherent optical properties (IOPs) in optically shallow water envi...

  • Article
  • Open Access
2 Citations
1,149 Views
27 Pages

21 June 2025

As fundamental geophysical information, the high-precision detection of shallow water bathymetry is critical data support for the utilization of island resources and coral reef protection delimitation. In recent years, the combination of active and p...

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