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829 Results Found

  • Article
  • Open Access
3 Citations
4,074 Views
14 Pages

Using Fluorescence Quenching Titration to Determine the Orientation of a Model Transmembrane Protein in Mimic Membranes

  • Haihong Huang,
  • Baosheng Ge,
  • Shuai Zhang,
  • Jiqiang Li,
  • Chenghao Sun,
  • Tongtao Yue and
  • Fang Huang

23 January 2019

After synthesis of transmembrane proteins (TMPs), they are transferred and inserted into plasma membranes to play biological functions. Crucially, orientation of TMPs in membranes determines whether they have biological activities. In cellular enviro...

  • Article
  • Open Access
8 Citations
4,169 Views
16 Pages

Orientational Preferences of GPI-Anchored Ly6/uPAR Proteins

  • Maxim M. Zaigraev,
  • Ekaterina N. Lyukmanova,
  • Alexander S. Paramonov,
  • Zakhar O. Shenkarev and
  • Anton O. Chugunov

Ly6/uPAR proteins regulate many essential functions in the nervous and immune systems and epithelium. Most of these proteins contain single β-structural LU domains with three protruding loops and are glycosylphosphatidylinositol (GPI)-anchored t...

  • Review
  • Open Access
18 Citations
9,508 Views
20 Pages

Targeting Oncogenic Protein-Protein Interactions by Diversity Oriented Synthesis and Combinatorial Chemistry Approaches

  • Andreas G. Tzakos,
  • Demosthenes Fokas,
  • Charlie Johannes,
  • Vassilios Moussis,
  • Eleftheria Hatzimichael and
  • Evangelos Briasoulis

27 May 2011

We are currently witnessing a decline in the development of efficient new anticancer drugs, despite the salient efforts made on all fronts of cancer drug discovery. This trend presumably relates to the substantial heterogeneity and the inherent biolo...

  • Article
  • Open Access
3 Citations
2,082 Views
24 Pages

28 November 2023

Hemodialysis is a lifesaving treatment for end-stage renal disease (ESRD) that exploits semipermeable membranes to remove fluids and uremic toxins from ESRD patients. Polyethersulfone (PES) is the most common membrane that is currently used in Canadi...

  • Article
  • Open Access
7 Citations
4,547 Views
17 Pages

Local Surface Electric Field’s Effect on Adsorbed Proteins’ Orientation

  • Larbi Filali,
  • Yamina Brahmi,
  • Jamal Dine Sib,
  • Yahya Bouizem,
  • Djamel Benlakehal,
  • Kacem Zellama,
  • Nathalie Lemée,
  • Ahmed Bouhekka,
  • Fatiha Kail and
  • Larbi Chahed
  • + 1 author

20 May 2019

Hydrogenated nanocrystalline silicon, while being non-charged and non-polar, could be an ideal candidate for the non-covalent and orientation-controlled immobilization of biomolecules thanks to local electric fields around nanocrystals. To that effec...

  • Article
  • Open Access
6 Citations
2,762 Views
15 Pages

Identification of Proteins Adsorbed on Hydroxyapatite Ceramics with a Preferred Orientation to a-Plane

  • Erika Onuma,
  • Takayuki Honda,
  • Hideyuki Yoshimura,
  • Tappei Nishihara,
  • Atsushi Ogura,
  • Nobuyuki Kanzawa and
  • Mamoru Aizawa

29 August 2023

Protein adsorption is essential for determining material biocompatibility and promoting adherent cell growth. In this study, we focused on the a-plane structure of hydroxyapatite (HAp). This a-plane structure closely resembles the crystal plane where...

  • Article
  • Open Access
15 Citations
5,170 Views
22 Pages

Orientation of Antigen Display on Self-Assembling Protein Nanoparticles Influences Immunogenicity

  • Cosette G. Schneider,
  • Justin A. Taylor,
  • Michael Q. Sibilo,
  • Kazutoyo Miura,
  • Katherine L. Mallory,
  • Christopher Mann,
  • Christopher Karch,
  • Zoltan Beck,
  • Gary R. Matyas and
  • Evelina Angov
  • + 3 authors

29 January 2021

Self-assembling protein nanoparticles (SAPN) serve as a repetitive antigen delivery platform with high-density epitope display; however, antigen characteristics such as size and epitope presentation can influence the immunogenicity of the assembled p...

  • Article
  • Open Access
3 Citations
3,310 Views
12 Pages

Evidence of Orientation-Dependent Early States of Prion Protein Misfolded Structures from Single Molecule Force Spectroscopy

  • Andrea Raspadori,
  • Valentina Vignali,
  • Anna Murello,
  • Gabriele Giachin,
  • Bruno Samorì,
  • Motomasa Tanaka,
  • Carlos Bustamante,
  • Giampaolo Zuccheri and
  • Giuseppe Legname

16 September 2022

Prion diseases are neurodegenerative disorders characterized by the presence of oligomers and amyloid fibrils. These are the result of protein aggregation processes of the cellular prion protein (PrPC) into amyloidal forms denoted as prions or PrPSc....

  • Article
  • Open Access
7 Citations
3,146 Views
14 Pages

Investigating the Role of Antigen Orientation on the Immune Response Elicited by Neisseria meningitidis Factor H Binding Protein on GMMA

  • Renzo Alfini,
  • Brunella Brunelli,
  • Erika Bartolini,
  • Martina Carducci,
  • Enrico Luzzi,
  • Francesca Ferlicca,
  • Scilla Buccato,
  • Barbara Galli,
  • Paola Lo Surdo and
  • Francesca Micoli
  • + 7 authors

26 July 2022

GMMA are outer membrane vesicles (OMVs) released from Gram-negative bacteria genetically modified to enhance OMVs formation that have been shown to be optimal systems to enhance immunogenicity of protein antigens. Here, we selected Neisseria meningit...

  • Article
  • Open Access
11 Citations
4,877 Views
14 Pages

Inter-Ligand STD NMR: An Efficient 1D NMR Approach to Probe Relative Orientation of Ligands in a Multi-Subsite Protein Binding Pocket

  • Serena Monaco,
  • Jonathan Ramírez-Cárdenas,
  • Ana Teresa Carmona,
  • Inmaculada Robina and
  • Jesus Angulo

21 August 2022

In recent years, Saturation Transfer Difference NMR (STD NMR) has been proven to be a powerful and versatile ligand-based NMR technique to elucidate crucial aspects in the investigation of protein-ligand complexes. Novel STD NMR approaches relying on...

  • Article
  • Open Access
5 Citations
2,699 Views
13 Pages

The identification of multiple simultaneous orientations of small molecule inhibitors binding to a protein target is a common challenge. It has recently been reported that the conformational heterogeneity of ligands is widely underreported in the Pro...

  • Article
  • Open Access
6 Citations
2,934 Views
17 Pages

Interaction of Lysozyme with Poly(L-lysine)/Hyaluronic Acid Multilayers: An ATR-FTIR Study

  • Natalia Velk,
  • Janos Keller,
  • Claus Duschl,
  • Gerald Brezesinski and
  • Dmitry Volodkin

19 February 2023

Polyelectrolyte multilayers (PEM) loaded with bioactive molecules such as proteins serve as excellent mimics of an extracellular matrix and may find applications in fields such as biomedicine and cell biology. A question which is crucial to the succe...

  • Article
  • Open Access
6 Citations
6,520 Views
13 Pages

Structural Analysis of Hand Drawn Bumblebee Bombus terrestris Silk

  • Andrea L. Woodhead,
  • Tara D. Sutherland and
  • Jeffrey S. Church

Bombus terrestris, commonly known as the buff-tailed bumblebee, is native to Europe, parts of Africa and Asia. It is commercially bred for use as a pollinator of greenhouse crops. Larvae pupate within a silken cocoon that they construct from proteins...

  • Article
  • Open Access
16 Citations
3,723 Views
12 Pages

Precise and Prompt Analyte Detection via Ordered Orientation of Receptor in WSe2-Based Field Effect Transistor

  • Muhammad Shahzad Zafar,
  • Ghulam Dastgeer,
  • Abul Kalam,
  • Abdullah G. Al-Sehemi,
  • Muhammad Imran,
  • Yong Ho Kim and
  • Heeyeop Chae

11 April 2022

Field-effect transistors (FET) composed of transition metal dichalcogenide (TMDC) materials have gained huge importance as biosensors due to their added advantage of high sensitivity and moderate bandgap. However, the true potential of these biosenso...

  • Article
  • Open Access
10 Citations
4,733 Views
13 Pages

17 December 2020

Hemagglutinin (HA) is a class I viral membrane fusion protein, which is the most abundant transmembrane protein on the surface of influenza A virus (IAV) particles. HA plays a crucial role in the recognition of the host cell, fusion of the viral enve...

  • Article
  • Open Access
21 Citations
8,765 Views
17 Pages

Enhanced Biosensor Platforms for Detecting the Atherosclerotic Biomarker VCAM1 Based on Bioconjugation with Uniformly Oriented VCAM1-Targeting Nanobodies

  • Duy Tien Ta,
  • Wanda Guedens,
  • Tom Vranken,
  • Katrijn Vanschoenbeek,
  • Erik Steen Redeker,
  • Luc Michiels and
  • Peter Adriaensens

Surface bioconjugation of biomolecules has gained enormous attention for developing advanced biomaterials including biosensors. While conventional immobilization (by physisorption or covalent couplings using the functional groups of the endogenous am...

  • Article
  • Open Access
34 Citations
5,675 Views
10 Pages

Insecticidal Activity and Synergistic Combinations of Ten Different Bt Toxins against Mythimna separata (Walker)

  • Jing Yang,
  • Yudong Quan,
  • Prabu Sivaprasath,
  • Muhammad Zeeshan Shabbir,
  • Zhenying Wang,
  • Juan Ferré and
  • Kanglai He

4 November 2018

The oriental armyworm (OAW), Mythimna separata (Walker), is a destructive pest of agricultural crops in Asia and Australia. Commercialized Bt crops have performed very well against their target pests; however, very few studies have been done on the s...

  • Article
  • Open Access
10 Citations
3,798 Views
13 Pages

Label-Free Impedimetric Immunosensors Modulated by Protein A/Bovine Serum Albumin Layer for Ultrasensitive Detection of Salbutamol

  • Chia-Hung Lin,
  • Ming-Jie Lin,
  • Jie-De Huang,
  • Yu-Sheng Chuang,
  • Yu-Fen Kuo,
  • Jung-Chih Chen and
  • Ching-Chou Wu

31 January 2020

The sensing properties of immunosensors are determined not only by the amount of immobilized antibodies but also by the number of effective antigen-binding sites of the immobilized antibody. Protein A (PA) exhibits a high degree of affinity with the...

  • Article
  • Open Access
1,889 Views
17 Pages

Gelation and Orientation Dynamics Induced by Contact of Protein Solution with Transglutaminase Solution

  • Kasumi Kakinoki,
  • Ryuta Kurasawa,
  • Yasuyuki Maki,
  • Toshiaki Dobashi and
  • Takao Yamamoto

12 June 2023

Gel growth induced by contact of polymer solutions with crosslinker solutions yields an emerging class of anisotropic materials with many potential applications. Here, we report the case of a study on the dynamics in forming anisotropic gels using th...

  • Article
  • Open Access
3 Citations
2,744 Views
18 Pages

Oriented Insertion of ESR-Containing Hybrid Proteins in Proteoliposomes

  • Lada E. Petrovskaya,
  • Evgeniy P. Lukashev,
  • Mahir D. Mamedov,
  • Elena A. Kryukova,
  • Sergei P. Balashov,
  • Dmitry A. Dolgikh,
  • Andrei B. Rubin,
  • Mikhail P. Kirpichnikov and
  • Sergey A. Siletsky

Microbial rhodopsins comprise a diverse family of retinal-containing membrane proteins that convert absorbed light energy to transmembrane ion transport or sensory signals. Incorporation of these proteins in proteoliposomes allows their properties to...

  • Article
  • Open Access
9 Citations
6,393 Views
20 Pages

Development and In-Depth Characterization of Bacteria Repellent and Bacteria Adhesive Antibody-Coated Surfaces Using Optical Waveguide Biosensing

  • Eniko Farkas,
  • Robert Tarr,
  • Tamás Gerecsei,
  • Andras Saftics,
  • Kinga Dóra Kovács,
  • Balazs Stercz,
  • Judit Domokos,
  • Beatrix Peter,
  • Sandor Kurunczi and
  • Robert Horvath
  • + 9 authors

20 January 2022

Bacteria repellent surfaces and antibody-based coatings for bacterial assays have shown a growing demand in the field of biosensors, and have crucial importance in the design of biomedical devices. However, in-depth investigations and comparisons of...

  • Review
  • Open Access
24 Citations
8,615 Views
29 Pages

25 June 2013

Many peptides and proteins are attached to or immersed in a biological membrane. In order to understand their function not only the structure but also their topology in the membrane is important. Solution NMR spectroscopy is one of the most often use...

  • Article
  • Open Access
937 Views
17 Pages

Affinity-Based Copolymer Coating for Oriented Protein Immobilization in Biosensor Development

  • Lorenzo Zarini,
  • Thomas Carzaniga,
  • Morena Pirotta,
  • Francesco Damin,
  • Dario Brambilla,
  • Marcella Chiari,
  • Ivan Bassanini,
  • Paola Gagni,
  • Alessandro Mussida and
  • Laura Sola
  • + 2 authors

4 October 2025

Effective protein immobilization is a critical step in biosensor development, as it ensures the stability, functionality, and orientation of biomolecules on the sensor surface. Here, we present a novel affinity-based terpolymer coating designed to en...

  • Article
  • Open Access
4 Citations
3,652 Views
12 Pages

29 April 2021

The beautiful structures of single- and multi-domain proteins are clearly ordered in some fashion but cannot be readily classified using group theory methods that are successfully used to describe periodic crystals. For this reason, protein structure...

  • Article
  • Open Access
8 Citations
3,847 Views
12 Pages

Nutrient Utilization during Male Maturation and Protein Digestion in the Oriental Hornet

  • Levona Bodner,
  • Sofia Bouchebti,
  • Omar Watted,
  • Rya Seltzer,
  • Ariel Drabkin and
  • Eran Levin

4 February 2022

Males of social Hymenoptera spend the first days following eclosion inside the nest before dispersing to find a young queen to mate with. During this period, they must acquire enough nutrients to enable their sexual maturation and store energy to sus...

  • Article
  • Open Access
16 Citations
6,491 Views
15 Pages

Experimental Study of the Oriented Immobilization of Antibodies on Photonic Sensing Structures by Using Protein A as an Intermediate Layer

  • Raffaele Caroselli,
  • Javier García Castelló,
  • Jorge Escorihuela,
  • María José Bañuls,
  • Ángel Maquieira and
  • Jaime García-Rupérez

28 March 2018

A proper antibody immobilization on a biosensor is a crucial step in order to obtain a high sensitivity to be able to detect low target analyte concentrations. In this paper, we present an experimental study of the immobilization process of antibodie...

  • Article
  • Open Access
21 Citations
9,937 Views
16 Pages

To plentifully benefit from its properties (mechanical, optical, biological) and its potential to manufacture green materials, the structure of spider silk has to be known accurately. To this aim, the major ampullate (MA) silk of Araneus diadematus (...

  • Article
  • Open Access
19 Citations
5,599 Views
12 Pages

6 October 2021

Olfaction plays a key role in the location of food and oviposition resources by tephritid fruit flies. Adult females, including oriental fruit fly, Bactrocera dorsalis, can sustain egg production throughout their lives provided they obtain sufficient...

  • Article
  • Open Access
10,550 Views
15 Pages

13 October 2009

In a previous study, we used bacterial flagellin to deliver antigens such as p27 of Mycobacterium tuberculosis to a host immune system and obtained a potent Th1 responsecompared to those obtained with Freund’s adjuvant and DNA immunization. In the cu...

  • Article
  • Open Access
1 Citations
1,575 Views
21 Pages

Proteins and their surrounding hydration water engage in a dynamic interplay that is critical for maintaining structural stability and functional integrity. However, the intricate coupling between protein dynamics and the structural order of hydratio...

  • Article
  • Open Access
4 Citations
2,067 Views
13 Pages

The Amyloid Assembly of the Bacterial Hfq Is Lipid-Driven and Lipid-Specific

  • Florian Turbant,
  • Quentin Machiels,
  • Jehan Waeytens,
  • Frank Wien and
  • Véronique Arluison

24 January 2024

Under specific conditions, some proteins can self-assemble into fibrillar structures called amyloids. Initially, these proteins were associated with neurodegenerative diseases in eucaryotes. Nevertheless, they have now been identified in the three do...

  • Article
  • Open Access
61 Citations
9,816 Views
14 Pages

Identification and Expression Profile Analysis of Odorant Binding Proteins in the Oriental Fruit Fly Bactrocera dorsalis

  • Weiwei Zheng,
  • Wei Peng,
  • Chipan Zhu,
  • Qun Zhang,
  • Giuseppe Saccone and
  • Hongyu Zhang

17 July 2013

Olfaction is crucial in many insects for critical behaviors, including those regulating survival and reproduction. Insect odorant-binding proteins (OBPs) function in the first step of the olfactory system and play an essential role in the perception...

  • Article
  • Open Access
5 Citations
3,596 Views
22 Pages

Fast and Interactive Positioning of Proteins within Membranes

  • André Lanrezac,
  • Benoist Laurent,
  • Hubert Santuz,
  • Nicolas Férey and
  • Marc Baaden

7 November 2022

(1) Background: We developed an algorithm to perform interactive molecular simulations (IMS) of protein alignment in membranes, allowing on-the-fly monitoring and manipulation of such molecular systems at various scales. (2) Methods: UnityMol, an adv...

  • Article
  • Open Access
1 Citations
2,027 Views
12 Pages

Molecular Insight into Ligand Binding and Transport by the Lentil Lipid Transfer Protein Lc-LTP2: The Role of Basic Amino Acid Residues at Opposite Entrances to the Hydrophobic Cavity

  • Daria N. Melnikova,
  • Ivan V. Bogdanov,
  • Andrey E. Potapov,
  • Anna S. Alekseeva,
  • Ekaterina I. Finkina and
  • Tatiana V. Ovchinnikova

24 November 2023

Lipid transfer proteins (LTPs) realize their functions in plants due to their ability to bind and transport various ligands. Structures of many LTPs have been studied; however, the mechanism of ligand binding and transport is still not fully understo...

  • Review
  • Open Access
16 Citations
3,879 Views
21 Pages

Structural Determinant of β-Amyloid Formation: From Transmembrane Protein Dimerization to β-Amyloid Aggregates

  • Nicolas Papadopoulos,
  • Nuria Suelves,
  • Florian Perrin,
  • Devkee M. Vadukul,
  • Céline Vrancx,
  • Stefan N. Constantinescu and
  • Pascal Kienlen-Campard

Most neurodegenerative diseases have the characteristics of protein folding disorders, i.e., they cause lesions to appear in vulnerable regions of the nervous system, corresponding to protein aggregates that progressively spread through the neuronal...

  • Article
  • Open Access
6 Citations
3,542 Views
13 Pages

19 March 2019

Peptidoglycans (PGNs) are major bacterial components recognized by the immune systems of insects and mammals. PGN recognition proteins (PGRPs) are widely distributed and highly conserved in vertebrates and invertebrates. PGRPs are a family of pattern...

  • Article
  • Open Access
16 Citations
3,980 Views
14 Pages

Fine Modulation of the Catalytic Properties of Rhizomucor miehei Lipase Driven by Different Immobilization Strategies for the Selective Hydrolysis of Fish Oil

  • Maryam Yousefi,
  • Marzia Marciello,
  • Jose Manuel Guisan,
  • Gloria Fernandez-Lorente,
  • Mehdi Mohammadi and
  • Marco Filice

27 January 2020

Functional properties of each enzyme strictly depend on immobilization protocol used for linking enzyme and carrier. Different strategies were applied to prepare the immobilized derivatives of Rhizomucor miehei lipase (RML) and chemically aminated RM...

  • Article
  • Open Access
6 Citations
4,992 Views
13 Pages

Unexpected Diversity of Wolbachia Associated with Bactrocera dorsalis (Diptera: Tephritidae) in Africa

  • Joseph Gichuhi,
  • Fathiya M. Khamis,
  • Johnnie Van den Berg,
  • Sunday Ekesi and
  • Jeremy K. Herren

31 May 2019

Bactrocera dorsalis (Hendel) is an important pest of fruit-bearing plants in many countries worldwide. In Africa, this pest has spread rapidly and has become widely established since the first invasion report in 2003. Wolbachia is a vertically transm...

  • Article
  • Open Access
8 Citations
3,127 Views
19 Pages

27 December 2022

Gray mold (Botrytis elliptica) causes a deleterious fungal disease that decreases the ornamental value and yield of lilies. Lilium oriental hybrid ‘Sorbonne’ is a variety that is resistant to gray mold. Understanding the mechanism of resi...

  • Review
  • Open Access
2,390 Views
19 Pages

24 September 2025

Extracellular matrix proteins have a complex assembly in tissue and it is believed that not only the chemical structure, but also their location, plays an important role in cellular functions. Collagen is one of the main components of the extracellul...

  • Article
  • Open Access
12 Citations
3,390 Views
16 Pages

Enhancing Antibodies’ Binding Capacity through Oriented Functionalization of Plasmonic Surfaces

  • Maria Laura Coluccio,
  • Fabiana Grillo,
  • Valentina Onesto,
  • Virginia Garo,
  • Cinzia Scala,
  • Paola Cuzzola,
  • Michela Calfa,
  • Patrizio Candeloro,
  • Francesco Gentile and
  • Natalia Malara
  • + 1 author

5 October 2021

Protein A has long been used in different research fields due to its ability to specifically recognize immunoglobulins (Ig). The protein derived from Staphylococcus aureus binds Ig through the Fc region of the antibody, showing its strongest binding...

  • Review
  • Open Access
35 Citations
8,642 Views
15 Pages

Polyhydroyxalkanoate Synthase Fusions as a Strategy for Oriented Enzyme Immobilisation

  • David O. Hooks,
  • Mark Venning-Slater,
  • Jinping Du and
  • Bernd H. A. Rehm

24 June 2014

Polyhydroxyalkanoate (PHA) is a carbon storage polymer produced by certain bacteria in unbalanced nutrient conditions. The PHA forms spherical inclusions surrounded by granule associate proteins including the PHA synthase (PhaC). Recently, the intrac...

  • Review
  • Open Access
4 Citations
2,631 Views
14 Pages

8 November 2023

Linear dichroism (LD) is a differential polarized light absorption spectroscopy used for studying filamentous molecules such as DNA and protein filaments. In this study, we review the applications of LD for the analysis of DNA-protein interactions. L...

  • Article
  • Open Access
5 Citations
2,000 Views
10 Pages

Polycationic polypeptides prompt the polycondensation of inorganic oxides, most notably of silica. Hen egg-white lysozyme is a small polycationic protein that is quite conveniently used to this end. The fate of the protein after the completion of the...

  • Article
  • Open Access
7 Citations
2,976 Views
16 Pages

Magnetophotoselection in the Investigation of Excitonically Coupled Chromophores: The Case of the Water-Soluble Chlorophyll Protein

  • Susanna Ciuti,
  • Alessandro Agostini,
  • Antonio Barbon,
  • Marco Bortolus,
  • Harald Paulsen,
  • Marilena Di Valentin and
  • Donatella Carbonera

A magnetophotoselection (MPS) investigation of the photoexcited triplet state of chlorophyll a both in a frozen organic solvent and in a protein environment, provided by the water-soluble chlorophyll protein (WSCP) of Lepidium virginicum, is reported...

  • Benchmark
  • Open Access
21 Citations
8,850 Views
14 Pages

Preactivation Crosslinking—An Efficient Method for the Oriented Immobilization of Antibodies

  • Barbara Schroeder,
  • Hoa Le Xuan,
  • Jule L. Völzke and
  • Michael G. Weller

Crosslinking of proteins for their irreversible immobilization on surfaces is a proven and popular method. However, many protocols lead to random orientation and the formation of undefined or even inactive by-products. Most concepts to obtain a more...

  • Article
  • Open Access
16 Citations
4,254 Views
19 Pages

Adsorption of Fibrinogen on Silica Surfaces—The Effect of Attached Nanoparticles

  • Kristin Hyltegren,
  • Mats Hulander,
  • Martin Andersson and
  • Marie Skepö

6 March 2020

When a biomaterial is inserted into the body, proteins rapidly adsorb onto its surface, creating a conditioning protein film that functions as a link between the implant and adhering cells. Depending on the nano-roughness of the surface, proteins wil...

  • Article
  • Open Access
2 Citations
3,100 Views
10 Pages

Dense Phases of γ-Gliadins in Confined Geometries

  • Amélie Banc,
  • Laurence Navailles,
  • Jacques Leng and
  • Denis Renard

The binary phase diagram of γ-gliadin, a wheat storage protein, in water was explored thanks to the microevaporator, an original PDMS microfluidic device. This protein, usually qualified as insoluble in aqueous environments, displayed a partial...

  • Article
  • Open Access
19 Citations
8,025 Views
21 Pages

Evaluation of Myocilin Variant Protein Structures Modeled by AlphaFold2

  • Tsz Kin Ng,
  • Jie Ji,
  • Qingping Liu,
  • Yao Yao,
  • Wen-Ying Wang,
  • Yingjie Cao,
  • Chong-Bo Chen,
  • Jian-Wei Lin,
  • Geng Dong and
  • Mingzhi Zhang
  • + 2 authors

21 December 2023

Deep neural network-based programs can be applied to protein structure modeling by inputting amino acid sequences. Here, we aimed to evaluate the AlphaFold2-modeled myocilin wild-type and variant protein structures and compare to the experimentally d...

  • Article
  • Open Access
5 Citations
2,009 Views
12 Pages

Plastocyanin and Cytochrome f Complex Structures Obtained by NMR, Molecular Dynamics, and AlphaFold 3 Methods Compared to Cryo-EM Data

  • Ilya Kovalenko,
  • Vladimir Fedorov,
  • Sergei Khruschev,
  • Taras Antal,
  • Galina Riznichenko and
  • Andrey Rubin

15 October 2024

Plastocyanin is a small mobile protein that facilitates electron transfer through the formation of short-lived protein–protein complexes with cytochrome bf and photosystem 1. Due to the transient nature of plastocyanin–cytochrome f comple...

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