You are currently viewing a new version of our website. To view the old version click .

508 Results Found

  • Article
  • Open Access
1,206 Views
14 Pages

2 January 2025

Due to human activities, the evolution of the lower reaches of the Yangtze River is complex, and the underwater terrain near the docks is varied. There may be serious erosion and sedimentation of the bank slope, which will affect the stability and ca...

  • Article
  • Open Access
25 Citations
12,408 Views
19 Pages

Autonomous Docking Based on Infrared System for Electric Vehicle Charging in Urban Areas

  • Joshué Pérez,
  • Fawzi Nashashibi,
  • Benjamin Lefaudeux,
  • Paulo Resende and
  • Evangeline Pollard

21 February 2013

Electric vehicles are progressively introduced in urban areas, because of their ability to reduce air pollution, fuel consumption and noise nuisance. Nowadays, some big cities are launching the first electric car-sharing projects to clear traffic jam...

  • Article
  • Open Access
2 Citations
4,456 Views
15 Pages

13 October 2017

Interactions between protein molecules are essential for the assembly, function, and regulation of proteins. The contact region between two protein molecules in a protein complex is usually complementary in shape for both molecules and the area of th...

  • Article
  • Open Access
1 Citations
2,970 Views
15 Pages

Unravelling the Interaction of Piperlongumine with the Nucleotide-Binding Domain of HSP70: A Spectroscopic and In Silico Study

  • Ana Paula Ribeiro Povinelli,
  • Gabriel Zazeri,
  • Alan M. Jones and
  • Marinnio Lopes Cornélio

13 December 2021

Piperlongumine (PPL) is an alkaloid extracted from several pepper species that exhibits anti-inflammatory and anti-carcinogenic properties. Nevertheless, the molecular mode of action of PPL that confers such powerful pharmacological properties remain...

  • Review
  • Open Access
6 Citations
5,118 Views
14 Pages

Synaptic vesicles dock on the presynaptic plasma membrane of axon terminals and become ready to fuse with the presynaptic membrane or primed. Fusion of the vesicle membrane and presynaptic membrane results in the formation of a pore between the membr...

  • Review
  • Open Access
39 Citations
18,685 Views
19 Pages

Cross-Docking: A Systematic Literature Review

  • Reza Kiani Mavi,
  • Mark Goh,
  • Neda Kiani Mavi,
  • Ferry Jie,
  • Kerry Brown,
  • Sharon Biermann and
  • Ahmad A. Khanfar

11 June 2020

This paper identifies the major research concepts, techniques, and models covered in the cross-docking literature. A systematic literature review is conducted using the BibExcel bibliometric analysis and Gephi network analysis tools. A research focus...

  • Review
  • Open Access
69 Citations
18,861 Views
35 Pages

23 June 2015

Blocking protein-protein interactions (PPI) using small molecules or peptides modulates biochemical pathways and has therapeutic significance. PPI inhibition for designing drug-like molecules is a new area that has been explored extensively during th...

  • Article
  • Open Access
918 Views
21 Pages

Aiming to solve the problem of collisions that may occur with ships during the operation of the floating dock, which may lead to functional failure or even destruction of the dock, a new collision avoidance device has been researched and designed. Th...

  • Article
  • Open Access
8 Citations
2,623 Views
18 Pages

Underwater Acoustically Guided Docking Method Based on Multi-Stage Planning

  • Hongli Xu,
  • Hongxu Yang,
  • Zhongyu Bai and
  • Xiangyue Zhang

Autonomous underwater vehicles (AUVs) are important in areas such as underwater scientific research and underwater resource collection. However, AUVs suffer from data portability and energy portability problems due to their physical size limitation....

  • Article
  • Open Access
28 Citations
6,203 Views
17 Pages

15 December 2020

Motivation: Bringing a new drug to the market is expensive and time-consuming. To cut the costs and time, computer-aided drug design (CADD) approaches have been increasingly included in the drug discovery pipeline. However, despite traditional dockin...

  • Article
  • Open Access
18 Citations
6,764 Views
15 Pages

Evaluation of Docking Machine Learning and Molecular Dynamics Methodologies for DNA-Ligand Systems

  • Tiago Alves de Oliveira,
  • Lucas Rolim Medaglia,
  • Eduardo Habib Bechelane Maia,
  • Letícia Cristina Assis,
  • Paulo Batista de Carvalho,
  • Alisson Marques da Silva and
  • Alex Gutterres Taranto

22 January 2022

DNA is a molecular target for the treatment of several diseases, including cancer, but there are few docking methodologies exploring the interactions between nucleic acids with DNA intercalating agents. Different docking methodologies, such as AutoDo...

  • Article
  • Open Access
13 Citations
3,989 Views
14 Pages

Stern Twin-Propeller Effects on Harbor Infrastructures. Experimental Analysis

  • Anna Mujal-Colilles,
  • Marcel·la Castells,
  • Toni Llull,
  • Xavi Gironella and
  • Xavier Martínez de Osés

2 November 2018

The growth of marine traffic in harbors, and the subsequent increase in vessel and propulsion system sizes, produces three linked problems at the harbor basin area: (i) higher erosion rates damaging docking structures; (ii) sedimentation areas reduci...

  • Proceeding Paper
  • Open Access
1,607 Views
7 Pages

15 November 2023

Parkinson’s disease is a neurodegenerative disease which involves the malfunction and death of vital nerve cells in the brain, called neurons, which produce dopamine. Dopamine is a neurotransmitter that communicates with the area of the brain r...

  • Review
  • Open Access
128 Citations
19,045 Views
17 Pages

Theory and Applications of Covalent Docking in Drug Discovery: Merits and Pitfalls

  • Hezekiel Mathambo Kumalo,
  • Soumendranath Bhakat and
  • Mahmoud E. S. Soliman

27 January 2015

he present art of drug discovery and design of new drugs is based on suicidal irreversible inhibitors. Covalent inhibition is the strategy that is used to achieve irreversible inhibition. Irreversible inhibitors interact with their targets in a time-...

  • Article
  • Open Access
5 Citations
2,981 Views
20 Pages

29 February 2024

Thedistribution of products stands out as one of the pivotal activities for logistics companies in recent years, particularly in the aftermath of the COVID-19 pandemic and other geopolitical events. Intense competition compels companies to efficientl...

  • Article
  • Open Access
21 Citations
4,679 Views
21 Pages

On-Farm Welfare Assessment Protocol for Suckling Piglets: A Pilot Study

  • Marika Vitali,
  • Elena Santacroce,
  • Federico Correa,
  • Chiara Salvarani,
  • Francesca Paola Maramotti,
  • Barbara Padalino and
  • Paolo Trevisi

10 June 2020

Piglets experience welfare issues during the nursery phase. This pilot study aimed to test a protocol for identifying the main welfare issues in suckling piglets and to investigate relationships among animal-based indicators and management conditions...

  • Feature Paper
  • Article
  • Open Access
3 Citations
3,527 Views
28 Pages

Harnessing Protein-Ligand Interaction Fingerprints to Predict New Scaffolds of RIPK1 Inhibitors

  • Natália Aniceto,
  • Vanda Marques,
  • Joana D. Amaral,
  • Patrícia A. Serra,
  • Rui Moreira,
  • Cecília M. P. Rodrigues and
  • Rita C. Guedes

23 July 2022

Necroptosis has emerged as an exciting target in oncological, inflammatory, neurodegenerative, and autoimmune diseases, in addition to acute ischemic injuries. It is known to play a role in innate immune response, as well as in antiviral cellular res...

  • Article
  • Open Access
7 Citations
6,860 Views
30 Pages

In Silico Prediction, Characterization and Molecular Docking Studies on New Benzamide Derivatives

  • Roxana Roman,
  • Lucia Pintilie,
  • Diana Nuță,
  • Speranța Avram,
  • Catalin Buiu,
  • Catalina Sogor and
  • Carmen Limban

5 February 2023

Recent research papers have confirmed the prevalence of microorganisms resistant to numerous antimicrobial agents, leading to spreading infections, extended hospitalizations, and increased mortality rates. The amplifying factors stimulate the need to...

  • Article
  • Open Access
5 Citations
2,749 Views
13 Pages

An Accurate UAV Ground Landing Station System Based on BLE-RSSI and Maximum Likelihood Target Position Estimation

  • Jaime Avilés-Viñas,
  • Roberto Carrasco-Alvarez,
  • Javier Vázquez-Castillo,
  • Jaime Ortegón-Aguilar,
  • Johan J. Estrada-López,
  • Daniel D. Jensen,
  • Ricardo Peón-Escalante and
  • Alejandro Castillo-Atoche

30 June 2022

Earth observation with unmanned aerial vehicles (UAVs) offers an extraordinary opportunity to bridge the gap between field observations and traditional air and space-borne remote sensing. In this regard, ground landing stations (GLS) systems play a c...

  • Feature Paper
  • Opinion
  • Open Access
15 Citations
22,321 Views
18 Pages

31 May 2018

Laws, regulations and professional standards increasingly aim to ban or restrict non-therapeutic tail docking in canine puppies. These constraints have usually been justified by reference to loss of tail participation in communication between dogs, t...

  • Article
  • Open Access
3 Citations
2,354 Views
18 Pages

The effect of the plum rain weather event on cycling trips reflects the climate resilience of the public bicycle system. However, quantitative studies regarding the impact of plum rain on public bicycle users and corresponding spatial heterogeneity h...

  • Article
  • Open Access
15 Citations
3,931 Views
16 Pages

28 February 2022

Multiple feeding modes, including walking, bus, private bike, docked bike-sharing, private electric bike (e-bike), car, and taxi, are applied for better accessibility in a metro-based trip. It is crucial to understand their access/egress distances an...

  • Article
  • Open Access
17 Citations
3,716 Views
15 Pages

Exploring Natural Product Activity and Species Source Candidates for Hunting ABCB1 Transporter Inhibitors: An In Silico Drug Discovery Study

  • Mahmoud A. A. Ibrahim,
  • Khlood A. A. Abdeljawaad,
  • Alaa H. M. Abdelrahman,
  • Laila A. Jaragh-Alhadad,
  • Hesham Farouk Oraby,
  • Eslam B. Elkaeed,
  • Gamal A. H. Mekhemer,
  • Gamal A. Gabr,
  • Ahmed M. Shawky and
  • Peter A. Sidhom
  • + 4 authors

The P-glycoprotein (P-gp/ABCB1) is responsible for a xenobiotic efflux pump that shackles intracellular drug accumulation. Additionally, it is included in the dud of considerable antiviral and anticancer chemotherapies because of the multidrug resist...

  • Article
  • Open Access
42 Citations
6,309 Views
19 Pages

Phytochemicals from Leucas zeylanica Targeting Main Protease of SARS-CoV-2: Chemical Profiles, Molecular Docking, and Molecular Dynamics Simulations

  • Mycal Dutta,
  • Abu Montakim Tareq,
  • Ahmed Rakib,
  • Shafi Mahmud,
  • Saad Ahmed Sami,
  • Jewel Mallick,
  • Mohammad Nazmul Islam,
  • Mohuya Majumder,
  • Md. Zia Uddin and
  • Abdullah Alsubaie
  • + 5 authors

17 August 2021

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), a contemporary coronavirus, has impacted global economic activity and has a high transmission rate. As a result of the virus’s severe medical effects, developing effective vaccinations is...

  • Article
  • Open Access
19 Citations
4,005 Views
18 Pages

Discovery of Potential Antiviral Compounds against Hendra Virus by Targeting Its Receptor-Binding Protein (G) Using Computational Approaches

  • Faisal Ahmad,
  • Aqel Albutti,
  • Muhammad Hamza Tariq,
  • Ghufranud Din,
  • Muhammad Tahir ul Qamar and
  • Sajjad Ahmad

16 January 2022

Hendra virus (HeV) belongs to the paramyxoviridae family of viruses which is associated with the respiratory distress, neurological illness, and potential fatality of the affected individuals. So far, no competitive approved therapeutic substance is...

  • Article
  • Open Access
5 Citations
3,741 Views
17 Pages

Virtual screening (VS) is a well-established method in the initial stages of many drug and material design projects. VS is typically performed using structure-based approaches such as molecular docking, or various ligand-based approaches. Most dockin...

  • Article
  • Open Access
5 Citations
3,277 Views
27 Pages

Characterizing Situations of Dock Overload in Bicycle Sharing Stations

  • Luca Cagliero,
  • Tania Cerquitelli,
  • Silvia Chiusano,
  • Paolo Garza,
  • Giuseppe Ricupero and
  • Elena Baralis

6 December 2018

Bicycle sharing systems are becoming increasingly popular in cities around the world as they are an inexpensive and sustainable means of transportation. Promoting the use of these systems substantially improves the quality of life in cities by reduci...

  • Article
  • Open Access
36 Citations
4,601 Views
15 Pages

The discovery of medicinal plants is crucial for drug development. Eucalyptus globulus leaves are used as a traditional medicine in many areas of world due to herbicidal and insecticidal activity. While natural products are difficult to be separated...

  • Article
  • Open Access
8 Citations
4,988 Views
24 Pages

Curcumin Analogues as a Potential Drug against Antibiotic Resistant Protein, β-Lactamases and L, D-Transpeptidases Involved in Toxin Secretion in Salmonella typhi: A Computational Approach

  • Tanzina Akter,
  • Mahim Chakma,
  • Afsana Yeasmin Tanzina,
  • Meheadi Hasan Rumi,
  • Mst. Sharmin Sultana Shimu,
  • Md. Abu Saleh,
  • Shafi Mahmud,
  • Saad Ahmed Sami and
  • Talha Bin Emran

Typhoid fever caused by the bacteria Salmonella typhi gained resistance through multidrug-resistant S. typhi strains. One of the reasons behind β-lactam antibiotic resistance is -lactamase. L, D-Transpeptidases is responsible for typhoid fever a...

  • Article
  • Open Access
18 Citations
5,725 Views
15 Pages

28 November 2020

Aims: Angiotensin-converting enzyme 2 (ACE2) plays an important role in the entry of coronaviruses into host cells. The current paper described how carnosine, a naturally occurring supplement, can be an effective drug candidate for coronavirus diseas...

  • Article
  • Open Access
7 Citations
3,294 Views
22 Pages

16 December 2024

The SARS-CoV-2 main protease (Mpro, also known as 3CLpro) is a key target for antiviral therapy due to its critical role in viral replication and maturation. This study investigated the inhibitory effects of Bofutrelvir, Nirmatrelvir, and Selinexor o...

  • Review
  • Open Access
498 Citations
39,568 Views
29 Pages

Key Topics in Molecular Docking for Drug Design

  • Pedro H. M. Torres,
  • Ana C. R. Sodero,
  • Paula Jofily and
  • Floriano P. Silva-Jr

15 September 2019

Molecular docking has been widely employed as a fast and inexpensive technique in the past decades, both in academic and industrial settings. Although this discipline has now had enough time to consolidate, many aspects remain challenging and there i...

  • Article
  • Open Access
2 Citations
2,832 Views
29 Pages

GNSS-Based Driver Assistance for Charging Electric City Buses: Implementation and Lessons Learned from Field Testing

  • Iman Esfandiyar,
  • Krzysztof Ćwian,
  • Michał R. Nowicki and
  • Piotr Skrzypczyński

5 June 2023

Modern public transportation in urban areas increasingly relies on high-capacity buses. At the same time, the share of electric vehicles is increasing to meet environmental standards. This introduces problems when charging these vehicles from charger...

  • Review
  • Open Access
145 Citations
11,684 Views
19 Pages

Application of MM-PBSA Methods in Virtual Screening

  • Giulio Poli,
  • Carlotta Granchi,
  • Flavio Rizzolio and
  • Tiziano Tuccinardi

23 April 2020

Computer-aided drug design techniques are today largely applied in medicinal chemistry. In particular, receptor-based virtual screening (VS) studies, in which molecular docking represents the gold standard in silico approach, constitute a powerful st...

  • Article
  • Open Access
97 Citations
15,232 Views
31 Pages

Evaluation of the Effect of Urban Redevelopment on Surface Urban Heat Islands

  • Florent Renard,
  • Lucille Alonso,
  • Yasmin Fitts,
  • Adeline Hadjiosif and
  • Jacques Comby

1 February 2019

Climate change is a global challenge with multiple consequences. One of its impacts is the increase in heatwave frequency and intensity. The risk is higher for populations living in urban areas, where the highest temperatures are generally identified...

  • Article
  • Open Access
24 Citations
7,192 Views
12 Pages

16 November 2015

In the recent cancer treatment, B-Raf kinase is one of key targets. Nowadays, a group of imidazopyridines as B-Raf kinase inhibitors have been reported. In order to investigate the interaction between this group of inhibitors and B-Raf kinase, molecu...

  • Article
  • Open Access
29 Citations
10,814 Views
21 Pages

A Combined Molecular Docking/Dynamics Approach to Probe the Binding Mode of Cancer Drugs with Cytochrome P450 3A4

  • Suresh Panneerselvam,
  • Dhanusha Yesudhas,
  • Prasannavenkatesh Durai,
  • Muhammad Ayaz Anwar,
  • Vijayakumar Gosu and
  • Sangdun Choi

14 August 2015

Cytarabine, daunorubicin, doxorubicin and vincristine are clinically used for combinatorial therapies of cancers in different combinations. However, the knowledge about the interaction of these drugs with the metabolizing enzyme cytochrome P450 is li...

  • Article
  • Open Access
9 Citations
2,669 Views
19 Pages

15 July 2022

The underwater docking of autonomous underwater vehicles (AUVs) is conducive to energy supply and data exchange. A vision-based high-precision estimation of “the positions and poses of an AUV relative to a docking station” (PPARD) is a ne...

  • Article
  • Open Access
4 Citations
3,739 Views
27 Pages

4 January 2025

Background/Objectives: DPP4 is an enzyme with multiple natural substrates and probable involvement in various mechanisms. It constitutes a drug target for the treatment of diabetes II, although, also related to other disorders. While a number of drug...

  • Article
  • Open Access
1 Citations
1,179 Views
18 Pages

Multiple LPA3 Receptor Agonist Binding Sites Evidenced Under Docking and Functional Studies

  • K. Helivier Solís,
  • M. Teresa Romero-Ávila,
  • Ruth Rincón-Heredia,
  • Sergio Romero-Romero,
  • José Correa-Basurto and
  • J. Adolfo García-Sáinz

Comparative studies using lysophosphatidic acid (LPA) and the synthetic agonist, oleoyl-methoxy glycerophosphothionate (OMPT), in cells expressing the LPA3 receptor revealed differences in the action of these agents. The possibility that more than on...

  • Article
  • Open Access
4 Citations
3,160 Views
20 Pages

7 July 2024

Background: This study investigated the process of selecting sustainable safety protocols for floating dock operations in shipyards by identifying potential workplace risks in emergency situations. Thirteen occupational hazards for shipyard floating...

  • Article
  • Open Access
19 Citations
4,799 Views
26 Pages

Computational Study on Potential Novel Anti-Ebola Virus Protein VP35 Natural Compounds

  • Louis K. S. Darko,
  • Emmanuel Broni,
  • Dominic S. Y. Amuzu,
  • Michael D. Wilson,
  • Christian S. Parry and
  • Samuel K. Kwofie

30 November 2021

Ebola virus (EBOV) is one of the most lethal pathogens that can infect humans. The Ebola viral protein VP35 (EBOV VP35) inhibits host IFN-α/β production by interfering with host immune responses to viral invasion and is thus considered as...

  • Article
  • Open Access
7 Citations
3,574 Views
14 Pages

Hierarchical Agglomerative Clustering of Bicycle Sharing Stations Based on Ultra-Light Edge Computing

  • Juan José Vinagre Díaz,
  • Rubén Fernández Pozo,
  • Ana Belén Rodríguez González,
  • Mark R. Wilby and
  • Carmen Sánchez Ávila

23 June 2020

Bicycle sharing systems (BSSs) have established a new shared-economy mobility model. After a rapid growth they are evolving into a fully-functional mobile sensor platform for cities. The viability of BSSs is floored by their operational costs, mainly...

  • Article
  • Open Access
7 Citations
4,150 Views
19 Pages

Enhancing Sustainable Transportation: AI-Driven Bike Demand Forecasting in Smart Cities

  • Malliga Subramanian,
  • Jaehyuk Cho,
  • Sathishkumar Veerappampalayam Easwaramoorthy,
  • Akash Murugesan and
  • Ramya Chinnasamy

18 September 2023

Due to global ecological restrictions, cities, particularly urban transportation, must choose ecological solutions. Sustainable bike-sharing systems (BSS) have become an important element in the worldwide transportation infrastructure as an alternati...

  • Article
  • Open Access
21 Citations
3,991 Views
15 Pages

Docking and Molecular Dynamics-Based Identification of Interaction between Various Beta-Amyloid Isoforms and RAGE Receptor

  • Anna P. Tolstova,
  • Alexei A. Adzhubei,
  • Vladimir A. Mitkevich,
  • Irina Yu. Petrushanko and
  • Alexander A. Makarov

5 October 2022

Beta-amyloid peptide (Aβ) is a ligand associated with RAGE (Advanced glycosylation end product-specific receptor). Aβ is translocated in complexes with RAGE from the blood to brain across the blood–brain barrier (BBB) by transcytosis....

  • Article
  • Open Access
11 Citations
4,071 Views
16 Pages

In Silico Studies of Potential Selective Inhibitors of Thymidylate Kinase from Variola virus

  • Danielle R. Garcia,
  • Felipe R. Souza,
  • Ana P. Guimarães,
  • Martin Valis,
  • Zbyšek Pavelek,
  • Kamil Kuca,
  • Teodorico C. Ramalho and
  • Tanos C. C. França

9 October 2021

Continuing the work developed by our research group, in the present manuscript, we performed a theoretical study of 10 new structures derived from the antivirals cidofovir and ribavirin, as inhibitor prototypes for the enzyme thymidylate kinase from...

  • Article
  • Open Access
3 Citations
3,143 Views
13 Pages

Many chemicals that enter the environment, food chain, and the human body can disrupt androgen-dependent pathways and mimic hormones and therefore, may be responsible for multiple diseases from reproductive to tumor. Thus, modeling and predicting and...

  • Feature Paper
  • Article
  • Open Access
23 Citations
5,681 Views
15 Pages

Discovery of Novel Tankyrase Inhibitors through Molecular Docking-Based Virtual Screening and Molecular Dynamics Simulation Studies

  • Vladimir P. Berishvili,
  • Alexander N. Kuimov,
  • Andrew E. Voronkov,
  • Eugene V. Radchenko,
  • Pradeep Kumar,
  • Yahya E. Choonara,
  • Viness Pillay,
  • Ahmed Kamal and
  • Vladimir A. Palyulin

11 July 2020

Tankyrase enzymes (TNKS), a core part of the canonical Wnt pathway, are a promising target in the search for potential anti-cancer agents. Although several hundreds of the TNKS inhibitors are currently known, identification of their novel chemotypes...

  • Article
  • Open Access
2 Citations
3,230 Views
20 Pages

Targeting Natural Plant Metabolites for Hunting SARS-CoV-2 Omicron BA.1 Variant Inhibitors: Extraction, Molecular Docking, Molecular Dynamics, and Physicochemical Properties Study

  • Heba Ali Hassan,
  • Ahmed R. Hassan,
  • Eslam A. R. Mohamed,
  • Ahmad Al-Khdhairawi,
  • Hala E. Taha,
  • Hanan M. El-Tantawy,
  • Iman A. M. Abdel-Rahman,
  • Ali E. Raslan,
  • Khaled S. Allemailem and
  • Ahmad Almatroudi
  • + 6 authors

19 October 2022

(1) Background: SARS-CoV-2 Omicron BA.1 is the most common variation found in most countries and is responsible for 99% of cases in the United States. To overcome this challenge, there is an urgent need to discover effective inhibitors to prevent the...

  • Article
  • Open Access
14 Citations
3,665 Views
17 Pages

9 December 2021

This study demonstrates the inhibitory effect of 42 pyrimidonic pharmaceuticals (PPs) on the 3-chymotrypsin-like protease of SARS-CoV-2 (3CLpro) through molecular docking, molecular dynamics simulations, and free binding energies by means of molecula...

of 11