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931 Results Found

  • Review
  • Open Access
1,669 Views
38 Pages

Label-Free Cancer Detection Methods Based on Biophysical Cell Phenotypes

  • Isabel Calejo,
  • Ana Catarina Azevedo,
  • Raquel L. Monteiro,
  • Francisco Cruz and
  • Raphaël F. Canadas

Progress in clinical diagnosis increasingly relies on innovative technologies and advanced disease biomarker detection methods. While cell labeling remains a well-established technique, label-free approaches offer significant advantages, including re...

  • Article
  • Open Access
3 Citations
4,405 Views
15 Pages

Improvement of Biophysical Properties and Affinity of a Human Anti-L1CAM Therapeutic Antibody through Antibody Engineering Based on Computational Methods

  • Heesu Chae,
  • Seulki Cho,
  • Munsik Jeong,
  • Kiyoung Kwon,
  • Dongwook Choi,
  • Jaeyoung Lee,
  • Woosuk Nam,
  • Jisu Hong,
  • Jiwoo Lee and
  • Hyojeong Hong
  • + 1 author

The biophysical properties of therapeutic antibodies influence their manufacturability, efficacy, and safety. To develop an anti-cancer antibody, we previously generated a human monoclonal antibody (Ab417) that specifically binds to L1 cell adhesion...

  • Review
  • Open Access
113 Citations
15,134 Views
40 Pages

G-Quadruplexes and Their Ligands: Biophysical Methods to Unravel G-Quadruplex/Ligand Interactions

  • Tiago Santos,
  • Gilmar F. Salgado,
  • Eurico J. Cabrita and
  • Carla Cruz

5 August 2021

Progress in the design of G-quadruplex (G4) binding ligands relies on the availability of approaches that assess the binding mode and nature of the interactions between G4 forming sequences and their putative ligands. The experimental approaches used...

  • Review
  • Open Access
31 Citations
10,667 Views
26 Pages

Selection of Biophysical Methods for Characterisation of Membrane Proteins

  • Tristan O. C. Kwan,
  • Rosana Reis,
  • Giuliano Siligardi,
  • Rohanah Hussain,
  • Harish Cheruvara and
  • Isabel Moraes

Over the years, there have been many developments and advances in the field of integral membrane protein research. As important pharmaceutical targets, it is paramount to understand the mechanisms of action that govern their structure–function...

  • Article
  • Open Access
8 Citations
7,281 Views
20 Pages

Remote Sensing Methods for the Biophysical Characterization of Protected Areas Globally: Challenges and Opportunities

  • Javier Martínez-López,
  • Bastian Bertzky,
  • Simon Willcock,
  • Marine Robuchon,
  • María Almagro,
  • Giacomo Delli and
  • Grégoire Dubois

Protected areas (PAs) are a key strategy to reverse global biodiversity declines, but they are under increasing pressure from anthropogenic activities and concomitant effects. Thus, the heterogeneous landscapes within PAs, containing a number of diff...

  • Feature Paper
  • Article
  • Open Access
2,070 Views
19 Pages

29 January 2025

This study evaluates cultural ecosystem services (CESs) provided by coastal beaches in Korea using two valuation methods: choice experiments (CEs) and the energy method (EM). CESs, which include non-material benefits like recreation and esthetic enjo...

  • Article
  • Open Access
35 Citations
8,190 Views
34 Pages

14 March 2013

Radiative transfer models predicting the bidirectional reflectance factor (BRF) of leaf canopies are powerful tools that relate biophysical parameters such as leaf area index (LAI), fractional vegetation cover fV and the fraction of photosyntheticall...

  • Article
  • Open Access
24 Citations
6,292 Views
20 Pages

A Biophysical Analysis on the Arm Stroke Efficiency in Front Crawl Swimming: Comparing Methods and Determining the Main Performance Predictors

  • Ricardo Peterson Silveira,
  • Susana Maria Soares,
  • Rodrigo Zacca,
  • Francisco B. Alves,
  • Ricardo J. Fernandes,
  • Flávio Antônio de Souza Castro and
  • João Paulo Vilas-Boas

Purpose: to compare different methods to assess the arm stroke efficiency ( η F ), when swimming front crawl using the arms only on the Measurement of Active Drag System (MAD System) and in a free-swimming condition, and to identify bioph...

  • Article
  • Open Access
8 Citations
3,758 Views
29 Pages

Phenological and Biophysical Mediterranean Orchard Assessment Using Ground-Based Methods and Sentinel 2 Data

  • Pierre Rouault,
  • Dominique Courault,
  • Guillaume Pouget,
  • Fabrice Flamain,
  • Papa-Khaly Diop,
  • Véronique Desfonds,
  • Claude Doussan,
  • André Chanzy,
  • Marta Debolini and
  • Raul Lopez-Lozano
  • + 1 author

12 September 2024

A range of remote sensing platforms provide high spatial and temporal resolution insights which are useful for monitoring vegetation growth. Very few studies have focused on fruit orchards, largely due to the inherent complexity of their structure. F...

  • Review
  • Open Access
8 Citations
6,493 Views
26 Pages

Ribosome assembly is one of the most fundamental processes of gene expression and has served as a playground for investigating the molecular mechanisms of how protein–RNA complexes (RNPs) assemble. A bacterial ribosome is composed of around 50...

  • Article
  • Open Access
6 Citations
4,518 Views
27 Pages

Integrating Biophysical and Sociocultural Methods for Identifying the Relationships between Ecosystem Services and Land Use Change: Insights from an Oasis Area

  • Hejie Wei,
  • Weiguo Fan,
  • Nachuan Lu,
  • Zihan Xu,
  • Huiming Liu,
  • Weiqiang Chen,
  • Sergio Ulgiati,
  • Xuechao Wang and
  • Xiaobin Dong

Identifying the relationships between ecosystem services (ESs) and land use change is crucial for ES management and sustainable regional development. The Manas region in China has witnessed dramatic reclamation activities in its desert areas that res...

  • Article
  • Open Access
29 Citations
7,229 Views
24 Pages

Optimization of Curvilinear Tracing Applied to Solar Physics and Biophysics

  • Markus J. Aschwanden,
  • Bart De Pontieu and
  • Eugene A. Katrukha

26 July 2013

We developed an automated pattern recognition code that is particularly well suited to extract one-dimensional curvilinear features from two-dimensional digital images. A former version of this Oriented Coronal Curved Loop Tracing (OCCULT) code was a...

  • Article
  • Open Access
13 Citations
4,019 Views
16 Pages

5 December 2021

The aim of this work was the evaluation of the physico-chemical properties of a new type of liposomes that are composed of DPPC and bioconjugates of anisic acid with phosphatidylcholine. In particular, the impact of modified anisic acid phospholipids...

  • Article
  • Open Access
11 Citations
4,321 Views
24 Pages

Anandamide-Modulated Changes in Metabolism, Glycosylation Profile and Migration of Metastatic Melanoma Cells

  • Anna Sobiepanek,
  • Małgorzata Milner-Krawczyk,
  • Paulina Musolf,
  • Tomasz Starecki and
  • Tomasz Kobiela

10 March 2022

An effective therapy for advanced melanoma, a skin cancer with the highest mortality, has not yet been developed. The endocannabinoid system is considered to be an attractive target for cancer treatment. The use of endocannabinoids, such as anandamid...

  • Article
  • Open Access
3 Citations
1,756 Views
16 Pages

The Development of CDC25A-Derived Phosphoseryl Peptides That Bind 14-3-3ε with High Affinities

  • Seraphine Kamayirese,
  • Sibaprasad Maity,
  • Laura A. Hansen and
  • Sándor Lovas

Overexpression of the 14-3-3ε protein is associated with suppression of apoptosis in cutaneous squamous cell carcinoma (cSCC). This antiapoptotic activity of 14-3-3ε is dependent on its binding to CDC25A; thus, inhibiting 14-3-3&epsil...

  • Review
  • Open Access
60 Citations
10,978 Views
32 Pages

Sarcoendoplasmic reticulum calcium ATPase (SERCA), a member of the P-type ATPase family of ion and lipid pumps, is responsible for the active transport of Ca2+ from the cytoplasm into the sarcoplasmic reticulum lumen of muscle cells, into the endopla...

  • Article
  • Open Access
30 Citations
5,870 Views
21 Pages

20 August 2022

Rapid and accurate estimation of maize biomass is critical for predicting crop productivity. The launched Sentinel-1 (S-1) synthetic aperture radar (SAR) and Sentinel-2 (S-2) missions offer a new opportunity to map biomass. The selection of appropria...

  • Review
  • Open Access
55 Citations
9,615 Views
65 Pages

29 September 2020

In this article, we describe the use of diagnostic timescales as simple tools for illuminating how aquatic ecosystems work, with a focus on coastal systems such as estuaries, lagoons, tidal rivers, reefs, deltas, gulfs, and continental shelves. Inten...

  • Review
  • Open Access
12 Citations
7,746 Views
17 Pages

1 December 2014

Starch is the major component of cereal grains and starchy foods, and changes in its biophysical and biochemical properties (e.g., amylose, amylopectin, pasting, gelatinization, viscosity) will have a direct effect on its end use properties (e.g., br...

  • Article
  • Open Access
19 Citations
14,856 Views
15 Pages

17 August 2009

In this paper we present a framework for modelling potential species distribution (PSD) of balsam fir [bF; Abies balsamea (L.) Mill.] as a function of landscape-level descriptions of: (i) growing degree days (GDD: a temperature related index), (ii) l...

  • Article
  • Open Access
7 Citations
1,872 Views
14 Pages

2 January 2025

The goal of this study was to propose and validate a method for predicting cropland suitability based on biophysical variables and machine learning according to an FAO land suitability standard using soybean (Glycine max L.) as a representative crop,...

  • Protocol
  • Open Access
20 Citations
9,078 Views
8 Pages

Cas9 is a site-specific RNA-guided endonuclease (RGEN) that can be used for precise genome editing in various cell types from multiple species. Ribonucleoprotein (RNP) complexes, which contains the Cas9 protein in complex with a guide RNA, are suffic...

  • Article
  • Open Access
39 Citations
4,660 Views
27 Pages

Prototyping Crop Traits Retrieval Models for CHIME: Dimensionality Reduction Strategies Applied to PRISMA Data

  • Ana B. Pascual-Venteo,
  • Enrique Portalés,
  • Katja Berger,
  • Giulia Tagliabue,
  • Jose L. Garcia,
  • Adrián Pérez-Suay,
  • Juan Pablo Rivera-Caicedo and
  • Jochem Verrelst

19 May 2022

In preparation for new-generation imaging spectrometer missions and the accompanying unprecedented inflow of hyperspectral data, optimized models are needed to generate vegetation traits routinely. Hybrid models, combining radiative transfer models w...

  • Review
  • Open Access
36 Citations
7,950 Views
15 Pages

The review highlights how protein–protein interactions (PPIs) have determining roles in most life processes and how interactions between protein partners are involved in various human diseases. The study of PPIs and binding interactions as well...

  • Review
  • Open Access
64 Citations
7,876 Views
13 Pages

Antimicrobial Dendrimeric Peptides: Structure, Activity and New Therapeutic Applications

  • Mariano A. Scorciapino,
  • Ilaria Serra,
  • Giorgia Manzo and
  • Andrea C. Rinaldi

Microbial resistance to conventional antibiotics is one of the most outstanding medical and scientific challenges of our times. Despite the recognised need for new anti-infective agents, however, very few new drugs have been brought to the market and...

  • Article
  • Open Access
29 Citations
9,135 Views
19 Pages

Shedding Light on the Interaction of Human Anti-Apoptotic Bcl-2 Protein with Ligands through Biophysical and in Silico Studies

  • Joao Ramos,
  • Jayaraman Muthukumaran,
  • Filipe Freire,
  • João Paquete-Ferreira,
  • Ana Rita Otrelo-Cardoso,
  • Dmitri Svergun,
  • Alejandro Panjkovich and
  • Teresa Santos-Silva

16 February 2019

Bcl-2 protein is involved in cell apoptosis and is considered an interesting target for anti-cancer therapy. The present study aims to understand the stability and conformational changes of Bcl-2 upon interaction with the inhibitor venetoclax, and to...

  • Article
  • Open Access
26 Citations
5,859 Views
18 Pages

The Natural Capital Value of the Seagrass Posidonia oceanica in the North-Western Mediterranean

  • Ilaria Rigo,
  • Chiara Paoli,
  • Giulia Dapueto,
  • Christine Pergent-Martini,
  • Gerard Pergent,
  • Alice Oprandi,
  • Monica Montefalcone,
  • Carlo Nike Bianchi,
  • Carla Morri and
  • Paolo Vassallo

15 October 2021

Posidonia oceanica is an endemic Mediterranean seagrass used as a ‘biological quality element’ in monitoring programmes of the EU Water Framework Directive, providing information about coastal ecosystems status. The regression of P. oceanica meadows...

  • Review
  • Open Access
15 Citations
7,705 Views
24 Pages

Nanobodies provide important advantages over traditional antibodies, including their smaller size and robust biochemical properties such as high thermal stability, high solubility, and the ability to be bioengineered into novel multivalent, multi-spe...

  • Review
  • Open Access
8 Citations
6,735 Views
13 Pages

24 February 2022

Despite recent developments in protein structure prediction, the process of the structure formation, folding, remains poorly understood. Notably, folding of multidomain proteins, which involves multiple steps of segmental folding, is one of the bigge...

  • Article
  • Open Access
1 Citations
1,952 Views
23 Pages

Estimating confidence intervals in small or noisy datasets is a recurring challenge in biomolecular research, particularly when data contain outliers or exhibit high variability. This study introduces a robust statistical method that combines a hybri...

  • Article
  • Open Access
4 Citations
2,963 Views
25 Pages

24 January 2022

Expansive growth is a culmination of many biological processes. It is fundamental to volume growth, development, morphogenesis, sensory responses, and environmental responses of plants, fungi, and algae. Expansive growth of walled cells and plant tis...

  • Article
  • Open Access
11 Citations
3,115 Views
15 Pages

20 September 2018

Biophysical properties are widely used to detect pathophysiological processes of vascular diseases or clinical states. For early detection of cardiovascular diseases, it is necessary to simultaneously measure multiple biophysical properties in a micr...

  • Article
  • Open Access
17 Citations
8,695 Views
14 Pages

Delineating Biophysical Environments of the Sunda Banda Seascape, Indonesia

  • Mingshu Wang,
  • Gabby N. Ahmadia,
  • Iliana Chollett,
  • Charles Huang,
  • Helen Fox,
  • Anton Wijonarno and
  • Marguerite Madden

The Sunda Banda Seascape (SBS), located in the center of the Coral Triangle, is a global center of marine biodiversity and a conservation priority. We proposed the first biophysical environmental delineation of the SBS using globally available satell...

  • Article
  • Open Access
5 Citations
5,506 Views
13 Pages

24 December 2021

Molecular assembly in a complex cellular environment is vital for understanding underlying biological mechanisms. Biophysical parameters (such as single-molecule cluster density, cluster-area, pairwise distance, and number of molecules per cluster) r...

  • Review
  • Open Access
14 Citations
7,539 Views
27 Pages

In the post-genome era, pathologies become associated with specific gene expression profiles and defined molecular lesions can be identified. The traditional therapeutic strategy is to block the identified aberrant biochemical activity. However, an a...

  • Article
  • Open Access
7 Citations
2,721 Views
21 Pages

VPBR: An Automatic and Low-Cost Vision-Based Biophysical Properties Recognition Pipeline for Pumpkin

  • L. Minh Dang,
  • Muhammad Nadeem,
  • Tan N. Nguyen,
  • Han Yong Park,
  • O New Lee,
  • Hyoung-Kyu Song and
  • Hyeonjoon Moon

14 July 2023

Pumpkins are a nutritious and globally enjoyed fruit for their rich and earthy flavor. The biophysical properties of pumpkins play an important role in determining their yield. However, manual in-field techniques for monitoring these properties can b...

  • Review
  • Open Access
7 Citations
3,623 Views
22 Pages

30 November 2022

The extracellular matrix (ECM) is a pericellular network of proteins and other molecules that provides mechanical support to organs and tissues. ECM biophysical properties such as topography, elasticity and porosity strongly influence cell proliferat...

  • Article
  • Open Access
7 Citations
3,667 Views
19 Pages

3 July 2021

Remote sensing has been applied to map the extent and biophysical properties of mangroves. However, the impact of several critical factors, such as the fractional cover and leaf-to-total area ratio of mangroves, on their canopy reflectance have rarel...

  • Article
  • Open Access
1,442 Views
22 Pages

Biophysical Insights into the Binding Interactions of Inhibitors (ICA-1S/1T) Targeting Protein Kinase C-ι

  • Radwan Ebna Noor,
  • Shahedul Islam,
  • Tracess Smalley,
  • Katarzyna Mizgalska,
  • Mark Eschenfelder,
  • Dimitra Keramisanou,
  • Aaron Joshua Astalos,
  • James William Leahy,
  • Wayne Charles Guida and
  • Mildred Acevedo-Duncan
  • + 2 authors

The overexpression of atypical protein kinase C-iota (PKC-ι) is a biomarker for carcinogenesis in various cell types, such as glioma, ovarian, renal, etc., manifesting as a potential drug target. In previous in vitro studies, ICA-1S and ICA-1T,...

  • Review
  • Open Access
6 Citations
4,742 Views
27 Pages

14 March 2023

Protein intrinsic disorder is increasingly recognized for its biological and disease-driven functions. However, it represents significant challenges for biophysical studies due to its high conformational flexibility. In addressing these challenges, w...

  • Article
  • Open Access
16 Citations
5,449 Views
20 Pages

A Hybrid Lagrangian–Eulerian Particle Model for Ecosystem Simulation

  • Pengfei Xue,
  • David J Schwab,
  • Xing Zhou,
  • Chenfu Huang,
  • Ryan Kibler and
  • Xinyu Ye

26 September 2018

Current numerical methods for simulating biophysical processes in aquatic environments are typically constructed in a grid-based Eulerian framework or as an individual-based model in a particle-based Lagrangian framework. Often, the biogeochemical pr...

  • Review
  • Open Access
398 Views
43 Pages

Advancing Label-Free Imaging Through CARS Microscopy: From Signal Formation to Biological Interpretation

  • Agata Barzowska-Gogola,
  • Emilia Staniszewska-Ślęzak,
  • Joanna Budziaszek,
  • Anna Górska-Ratusznik,
  • Andrzej Baliś,
  • Michał Łucki,
  • Adam Sułek and
  • Barbara Pucelik

19 February 2026

Label-free imaging is becoming ever more important, especially in modern molecular biophysics. This method allows observation of biological structures and dynamics without the alteration caused by dyes or genetic labels. Coherent Anti-Stokes Raman Sc...

  • Article
  • Open Access
133 Citations
18,084 Views
14 Pages

22 December 2017

Methods for accurately measuring biophysical parameters are a key component for quantitative evaluation regarding to various forest applications. Conventional in situ measurements of these parameters take time and expense, encountering difficultness...

  • Article
  • Open Access
16 Citations
3,679 Views
14 Pages

Biophysical, Nutraceutical, and Technofunctional Features of Specialty Cereals: Pigmented Popcorn and Sorghum

  • Valery Tixian Robles-Plata,
  • Sergio Serna Saldivar,
  • Juan de Dios Figueroa-Cárdenas,
  • William L. Rooney,
  • Juan Pablo Dávila-Vega,
  • Cristina Chuck-Hernández and
  • Anayansi Escalante-Aburto

7 June 2023

Different pigmented corn and sorghum types were evaluated to characterize their biophysical, nutraceutical, and technofunctional properties for the first time. Commercially pigmented (blue, purple, red, black, and yellow) popcorn (Zea mays var. evert...

  • Review
  • Open Access
2 Citations
2,356 Views
12 Pages

Cellular mechanical properties are critical for tissue and organ homeostasis, which are associated with many diseases and are very promising non-labeled biomarkers. Over the past two decades, many research tools based on microfluidic methods have bee...

  • Review
  • Open Access
12 Citations
5,654 Views
24 Pages

Contributions and Limitations of Biophysical Approaches to Study of the Interactions between Amphiphilic Molecules and the Plant Plasma Membrane

  • Aurélien L. Furlan,
  • Yoann Laurin,
  • Camille Botcazon,
  • Nely Rodríguez-Moraga,
  • Sonia Rippa,
  • Magali Deleu,
  • Laurence Lins,
  • Catherine Sarazin and
  • Sébastien Buchoux

20 May 2020

Some amphiphilic molecules are able to interact with the lipid matrix of plant plasma membranes and trigger the immune response in plants. This original mode of perception is not yet fully understood and biophysical approaches could help to obtain mo...

  • Article
  • Open Access
22 Citations
4,187 Views
18 Pages

15 November 2019

The estimation of forest biophysical attributes improves when airborne laser scanning (ALS) is integrated. Individual tree detection methods (ITD) and traditional area-based approaches (ABA) are the two main alternatives in ALS-based forest inventory...

  • Article
  • Open Access
3 Citations
2,159 Views
14 Pages

24 October 2023

The biophysical effect of land cover changes (LCC) on local temperature is currently a hot topic. This work selects one of the nine agricultural divisions in China, the Sichuan Basin and surrounding regions, as the study area. By combining long-term...

  • Article
  • Open Access
11 Citations
6,083 Views
15 Pages

Exploring IDP–Ligand Interactions: Tau K18 as a Test Case

  • Darius Vagrys,
  • James Davidson,
  • Ijen Chen,
  • Roderick E. Hubbard and
  • Ben Davis

Over the past decade intrinsically disordered proteins (IDPs) have emerged as a biologically important class of proteins, many of which are of therapeutic relevance. Here, we investigated the interactions between a model IDP system, tau K18, and nine...

  • Article
  • Open Access
12 Citations
2,855 Views
13 Pages

2 December 2020

(1) Background: Our aim is to reveal the influence of the geometry designs on biophysical stimuli and healing patterns. The design guidelines for dental implants can then be provided. (2) Methods: A two-dimensional axisymmetric finite element model w...

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