Search Results (980)

Plant growth-promoting bacteria (PGPB) associated with Coffea arabica L. and Coffea canephora Pierre ex Froehner offer a viable strategy to reduce synthetic inputs and enhance resilience in coffee agroecosystems. This review synthesizes evidence from the past decade on rhizosphere-associated and endophytic taxa, their plant growth-promotion and biocontrol mechanisms and the resulting agronomic outcomes. A compartment-specific core microbiome is reported, in the rhizosphere of both hosts, in which Bacillus and Pseudomonas consistently dominate. Within endophytic communities, Bacillus predominates across tissues (roots, leaves and seeds), whereas accompanying genera are host- and tissue-specific. In C. arabica, endophytes frequently include Pseudomonas in roots and leaves. In C. canephora, root endophytes recurrently include Burkholderia, Kitasatospora and Rahnella, while seed endophytes are enriched for Curtobacterium. Functionally, coffee-associated PGPB solubilize phosphate; fix atmospheric nitrogen via biological nitrogen fixation; produce auxins; synthesize siderophores; and express 1-aminocyclopropane-1-carboxylate deaminase. Indirect benefits include the production of antifungal and nematicidal metabolites, secretion of hydrolytic enzymes and elicitation of induced systemic resistance. Under greenhouse conditions, inoculation with PGPB commonly improves germination, shoot and root biomass, nutrient uptake and tolerance to drought or nutrient limitation. Notable biocontrol activity against fungal phytopathogens and plant-parasitic nematodes has also been documented. Key priorities for translation to practice should include (i) multi-site, multi-season field trials to quantify performance, persistence and economic returns; (ii) strain-resolved omics to link taxa to functions expressed within the plant host; (iii) improved bioformulations compatible with farm management and (iv) rationally designed consortia aligned with production goals and biosafety frameworks. Full article

A pot experiment was carried out to evaluate the effects of composts, vermicomposts, and mineral fertilization on maize (Zea mays L.) growth, grain quality, soil chemical properties, and nematode communities. Eight treatments were tested, including organic amendments combined with mineral nitrogen, exclusive mineral fertilization, and an unfertilized control. Soil chemical properties, including pH, salinity, nitrogen compounds, and macro- and microelements, varied notably across treatments. Nematode community analysis revealed distinct patterns among treatments: Shannon diversity was moderate and relatively stable across most treatments, but a statistically significant reduction was recorded in treatment 7. In contrast, the Plant Parasitic Index (PPI) varied significantly, reflecting differences in community maturity and parasitic pressure. Bacterivores and fungivores indicated active nutrient cycling, while omnivores and predators reflected soil food web stability. Fertilization treatments significantly affected maize grain development. The highest thousand-kernel weight (TKW) was recorded in treatment 6 (+8.9% vs. control) and treatment 4 (+7.4% vs. control). The kernel number per cob was greatest in treatments 4 and 5 (+38% and +32%), with corresponding increases in grain mass per cob (+48% and +40%). The mean cob core weight ranged from 20.1 g in the control treatment to 30.2 g in treatment 1. The greatest increases compared to the control were observed in treatments 1 and 5, amounting to 50.2% and 44.8%, respectively. Overall, fertilization influenced grain quality, soil chemistry, and nematode communities, highlighting the importance of integrating organic and mineral amendments for sustainable crop production. Full article

A low-scale Food Waste Compost (FWC1), characterized by optimal physic-chemical parameters and high organic matter percentages, was used as a fertilizer and a bio-stimulant for vegetable plants. Groups of treated plants were inoculated with active juveniles of root-knot nematodes to detect the effect on plant defense. Optimal amounts of compost mixed with soil increased plant biomass 30% compared to untreated plants. Moreover, when plants were inoculated, treated roots contained about 50% less sedentary forms (SFs) of nematodes and a lower reproduction rate of the parasites than untreated plants. Although the performance of FWC1 as defense activator was similar to other microbiome-generating commercial formulations, the compost was found to be the best fertilizer in both un- and inoculated plants. Diffuse root colonization by arbuscular mycorrhizal fungi (AMF) was observed after treatments with FWC1. FWC1 water extracts did not show any toxic effect on living nematode juveniles. Expression of the marker gene of immune response PR4b was found to be 3–5-fold higher in the roots of inoculated plants treated with FWC1 with respect to untreated plants, thus indicating that FWC1 primes plants against RKNs (root-knot nematodes, Meloidogyne incognita (Kofoid White) Chitw). Data are reported to associate immunization of plants with mycorrhization occurring in FWC1-treated plants. The proposed compost is indicated as having optimal performance both as a bio-fertilizer and a bio-stimulant. Full article

Root-knot nematodes (RKNs) of the genus Meloidogyne spp., are among the most economically important groups of plant-parasitic nematodes worldwide, causing significant economic losses through yield reduction across a wide range of crops. In Croatia, although the presence of Meloidogyne spp. has been documented for decades, data at the species level was limited. As accurate identification is crucial for implementation of effective management strategies, we attempted to fill this gap. This study presents the results of a national survey of RKNs affecting potato crops as well as an early warning programme targeting vegetable crops, conducted across Croatia between 2022 and 2024. Nematodes were identified using morphological analyses (female perineal patterns and second-stage juveniles) and molecular methods (PCR with group-specific and species-specific primers, as well as DNA sequencing). Meloidogyne spp. were detected in 61 out of 210 samples, corresponding to an infestation rate of 29%. Four species were identified: M. incognita, M. hapla, M. arenaria, and M. javanica. Notably, M. incognita and M. javanica are reported here for the first time in Croatia. These results provide updated insights into the distribution and identity of RKNs in Croatia, thereby establishing a foundation for the implementation of sustainable management strategies. Full article

Plasmodesmata (PD) are dynamic nanochannels interconnecting plant cells and coordinating development, nutrient distribution, and systemic defense. Their permeability is tightly regulated by callose turnover, PD-localized proteins, lipid microdomains, and endoplasmic reticulum (ER)–plasma membrane (PM) tethers, which together form regulatory nodes that gate symplastic exchange. Increasing evidence demonstrates that effectors from diverse kingdoms—fungi, oomycetes, bacteria, viruses, viroids, phytoplasmas, nematodes, insects, parasitic plants, and symbiotic microbes—converge on these same nodes to modulate PD gating. Pathogens typically suppress callose deposition or destabilize PD regulators to keep channels open, whereas mutualists fine-tune PD conductivity to balance resource exchange with host immunity. This review synthesizes current knowledge of effector strategies that remodel PD architecture or exploit PD for intercellular movement, highlighting novel cross-kingdom commonalities–callose manipulation, reprogramming of PD proteins, lipid rewiring, and co-option of ER-PM tethers. We outline unresolved questions on effector–PD target specificity and dynamics, and identify prospects in imaging, proteomics, and synthetic control of PD. Understanding how effectors reprogram PD connectivity can enable engineering of crops that block pathogenic trafficking while safeguarding beneficial symbioses. Full article

The treatment of parasitic infections has evolved in terms of effectiveness and the prevention of drug resistance. This is highlighted by the discovery of ivermectin (IVM), a macrocyclic lactone and broad-spectrum antiparasitic agent. IVM garnered scientific attention by presenting a therapeutic alternative in the field of veterinary medicine due to its control of multiple parasite species, including nematodes and soil-transmitted helminths. Shortly after its discovery, IVM was approved for human use by the World Health Organization (WHO) and United States Food and Drug Administration (FDA) for combating head lice, onchocerciasis, rosacea, scabies, and worm infestations within the gastrointestinal tract (GIT). In veterinary medicine, IVM is available in a range of formulations and can be administered via different routes (i.e., oral, topical, and parenteral), whereas for humans, IVM is only approved as a single oral dose and dermal cream. Establishing a comprehensive overview of IVM’s applications in both human and veterinary medicine is necessary, particularly in light of its repurposing potential as a treatment for various conditions and emerging diseases. Given its primary application in veterinary medicine, there is a need to enhance the development of dosage forms suitable for human use. Therefore, this review details the discovery, mechanisms, and applications of IVM, while also examining the challenges of resistance, side-effects, and controversy surrounding its use, to ultimately emphasize the importance of targeted, optimized IVM delivery via tailored dosage form development in animals and humans as part of the One Health approach to interlink innovations across veterinary and human medicine fields. Full article

The intensity and prevalence of different gastrointestinal nematode species vary across regions worldwide. Oesophagostomum radiatum commonly shows a high occurrence in young cattle. O. radiatum causes anaemia, hypoproteinaemia, and immunopathological changes in the large intestine wall, impairing calves’ body weight gain. This study aimed to assess the impact of natural O. radiatum infection on haematological parameters and immune responses in 23 Nellore calves, considering sex-based differences. Assessments included Oesophagostomum egg count (EPG), worm count, packed cell volume (PCV), total plasma protein, histopathological and immunohistochemistry analyses. A large number of parasites attached to the colon mucosa were observed, along with massive nodule formation and haemorrhagic lesions, mainly within a 20–30 cm-long segment adjacent to the nodules. The maximum mean egg shedding was approximately 165 EPG for males and 173 EPG for female calves; however, males presented a significantly higher worm count (969 ± 200.5) than females (460 ± 99.5). There were significant positive correlations between the total O. radiatum worm count and O. radiatum EPG for both female and male calves. Significant negative correlations were observed between the total O. radiatum worm count and PCV in female calves. Our results demonstrated that natural O. radiatum infection in Nellore calves induced marked immunopathological alterations, including chronic inflammatory responses that impaired intestinal function. Sex-related differences suggested that female calves may develop more effective tissue responses. These findings emphasise the economic impact of subclinical infections and reinforce the importance of control strategies to minimise productivity losses in cattle. Full article

The main pathological, epidemiological, and clinical findings of haemonchosis in goats and sheep in a semi-arid region of Northeast Brazil are described. Necropsy records conducted between January 2012 and December 2021 at the Animal Pathology Laboratory (APL) of the UFCG, were reviewed. In 2022, a prospective study monitored the necropsies performed on these species. In total, necropsies were conducted on 410 goats and 319 sheep, haemonchosis was observed in 50 (12%) goats and 49 (15%) sheep. For goats, females (45/50, 90%; p ≤ 0.05), the age range of 13–35 months (25/50, 50%; p ≤ 0.05), and crossbred animals (38/50, 76%; p ≤ 0.05) were most affected. Both goat and sheep, respectively, raised in a semi-intensive system were more infected (41/50, 82%; 36/49, 76.5%; p ≤ 0.05). The animals came from the States of Paraíba, Pernambuco, Ceará, and Rio Grande do Norte. The proportion of goats (32/50, 64%) and sheep (30/49, 61.2%) with a normal body condition score was significantly different (p ≤ 0.05). The main pathological alterations (p ≤ 0.05) were the mucosal and carcass paleness, and the presence of H. contortus specimens in the abomasum. Haemonchosis remains a significant parasitic disease affecting small ruminants in the semi-arid region of Northeast Brazil, leading to mortality and decreased production rates, posing substantial economic challenges that adversely impact goat and sheep farming. Full article

Calicophoron daubneyi, a rumen fluke increasingly reported in European livestock, has emerged as a relevant parasitic threat in cattle. This study investigated the prevalence and seasonal dynamics of gastrointestinal endoparasites in 382 fecal samples from 40 beef cattle farms (26 extensive and 14 semi-extensive) in central Spain. Samples were analyzed using flotation, sedimentation, and modified McMaster techniques, complemented by PCR confirmation of trematodes and a 25-variable epidemiological survey. C. daubneyi was detected in 38.74% of samples and 77.5% of farms, surpassing Fasciola hepatica (13.09%), gastrointestinal nematodes (42.15%), and Eimeria spp. (16.75%). Mixed infections were frequent. Seasonal shedding patterns varied by parasite, with C. daubneyi peaking in spring and winter. Statistical analyses (Kruskal–Wallis, ANOVA, Mann–Whitney U) revealed significant seasonal differences and confirmed higher F. hepatica egg counts in extensive systems (p = 0.0012). Anthelmintic treatment was infrequent and mainly guided by coprological diagnosis; ivermectin, closantel, albendazole, and nitroxinil were the most used drugs, though none fully effective against C. daubneyi. Anthelmintic resistance was not evaluated in this study. These findings confirm the emergence of C. daubneyi in central Spain and highlight the need for targeted surveillance and seasonally adjusted control strategies. Full article

Cyst nematodes of the genus Heterodera are important plant-parasitic nematodes that cause significant crop losses worldwide but are often overlooked due to their non-specific symptoms and complex biology. This study assessed Heterodera diversity in Portugal using an integrative molecular approach based on four genetic markers (mtCOI, 18S rDNA, ITS, and 28S rDNA). Five valid species were identified: Heterodera cruciferae, H. mani, H. schachtii, H. trifolii, and H. zeae, with H. mani reported for the first time in the country. A distinct taxon from Coimbra (central Portugal) may represent a new or unsequenced species, highlighting gaps in reference datasets. Among the markers, mtCOI was the most effective, though some taxa remained unresolved. These results reinforce the value of multi-marker approaches, contribute with new sequences, and improve diagnostic capability for nematode management. Full article

Dirofilariosis, a parasitic disease caused by nematodes of the genus Dirofilaria, primarily affects dogs but can also infect other carnivores and, more rarely, humans. In Europe, the most commonly involved species are D. immitis and D. repens, transmitted through the bites of mosquito vectors. This study, conducted in Tulcea County between April and October 2024, aimed to determine the prevalence of D. immitis and D. repens in mosquitoes. A total of 1507 mosquitoes were collected and grouped into 76 pools, and subsequently molecular analysis was carried out using qPCR. The estimated infection rate (EIR) was calculated using statistical methods available in the ‘binGroup’ package in R, which allow the determination of the point estimate and confidence interval (CI) for a single binomial proportion in group testing. The study revealed a high infection rate with D. immitis (48%), while D. repens was identified in only two pools. The species with the highest vector potential was Anopheles maculipennis (PTP = 75%, EIR = 0.1168 with both Dirofilaria species), followed by Aedes vexans. Notably, Aedes albopictus was identified for the first time in Tulcea, and all individuals were positive for D. immitis. Simulations of local thermal conditions using the proposed model show that the favorable time window for mosquitoes will increase until 2100. Our results indicate an established and active transmission cycle of D. immitis in the region, a situation projected to intensify with climate change requiring urgent monitoring. Full article

The filarioid nematode Dirofilaria immitis is the causative agent of heartworm disease, a major parasitic infection of canids, felids and occasionally humans. Current prevention relies on macrocyclic lactone-based chemoprophylaxis, but the emergence of drug resistance highlights the need for new intervention strategies. Here, we applied a machine learning (ML)-based framework to predict and prioritise essential genes in D. immitis in silico, using genomic, transcriptomic and functional datasets from the model organisms Caenorhabditis elegans and Drosophila melanogaster. With a curated set of 26 predictive features, we trained and evaluated multiple ML models and, using a defined threshold, we predicted 406 ‘high-priority’ essential genes. These genes showed strong transcriptional activity across developmental stages and were inferred to be enriched in pathways related to ribosome biogenesis, translation, RNA processing and signalling, underscoring their potential as anthelmintic targets. Transcriptomic analyses suggested that these genes are associated with key reproductive and neural tissues, while chromosomal mapping revealed a relatively even genomic distribution, in contrast to patterns observed in C. elegans and Dr. melanogaster. In addition, initial evidence suggested structural variation in the X chromosome compared with a recently published D. immitis assembly, indicating the importance of integrating long-read sequencing with high-throughput chromosome conformation capture (Hi-C) mapping. Overall, this study reinforces the potential of ML-guided approaches for essential gene discovery in parasitic nematodes and provides a foundation for downstream validation and therapeutic target development. Full article

The increasing reliance on imported fish products in Kazakhstan raises concerns about the presence of fish-borne parasitic infections, particularly zoonotic helminths that pose risks to public health. This study aimed to assess the diversity and prevalence of helminths in commercially imported marine fish using both traditional and molecular diagnostic methods. A total of 670 specimens representing 17 fish species were collected from retail markets in Astana, Almaty, and Karaganda. Macroscopic inspection and muscle compression techniques were used to detect larval parasites, followed by DNA extraction and PCR amplification targeting the ITS-2, 5.8S, 18S rRNA, and mitochondrial COX gene regions. Sequencing and phylogenetic analysis confirmed the presence of cestodes (Eubothrium crassum, Hepatoxylon trichiuri, Nybelinia surmenicola), acanthocephalans (Echinorhynchus gadi), and nematodes, with a predominance of zoonotic species from the Anisakidae family, including Anisakis simplex, A. pegreffii, Pseudoterranova decipiens, and Contracaecum osculatum. The highest levels of infection were detected in Atka mackerel (97.1%), herring (96.0%), mackerel (92.0%), and blue whiting (88.1%), while the lowest rates were recorded in smelt (6.8%), flounder (10.2%), and haddock (16.0%). This is the first molecular-based survey of fish helminths in Kazakhstan and highlights the need to integrate genetic screening into food safety control systems to better protect consumers and improve parasite monitoring of imported seafood. Full article

Australian plants of the family Haemodoraceae have been a reliable source of new secondary metabolites, particularly those of the ‘phenylphenalenone’ class, and related chromenes and xanthones. Some of these compounds demonstrate anti-microbial properties against both Gram-negative and Gram-positive bacteria. Chemical profiling of thirty individual ethanolic extracts from six separate species of Australian plants belonging to the family Haemodoraceae was conducted using an HPLC-MS approach reinforced by HRLC(ESI)-MS. Six of the extracts were further explored by employing HRLC(ESI)-MS and the compounds present were characterised and confirmed based on a comparison to the original data. All thirty extracts were assessed for biological activity against the parasitic nematode Haemonchus contortus in vitro. The chemical profiling methodology adopted resulted in the identification of thirty-four previously reported compounds, identifying on average 64% of the previously reported secondary metabolites across the species Haemodorum simulans, Haemodorum spicatum, Haemodorum brevisepalum and Macropidia fuliginosa. Furthermore, compounds from the phenylbenzoisoquinolindone class were detected in the bulbs of Haemodorum simulans and Haemodorum coccineum, representing the first report of the structure class in extracts of the genus Haemodorum. Extracts of the H. simulans stems, M. fuliginosa bulbs and H. distichophyllum roots and bulbs exhibited anthelmintic activity in vitro. The chemical profiling HPLC-MS methodology adopted was successful in the rapid identification of most of the previously reported secondary metabolites across the Haemodoracae species, indicating that the analytical approach was robust. This study demonstrates the effectiveness of dereplication via HPLC-MS-based chemical profiling across six Australian Haemodoraceae species, identifying numerous known and putatively novel secondary metabolites. It also reports, for the first time, anthelmintic activity in selected species and marks the first detailed phytochemical investigation of H. distichophyllum since its initial pigment analysis over 50 years ago. Full article

Plant-parasitic nematodes (PPNs) pose a significant threat to agricultural production and global food security. To mitigate this challenge, quantitative trait locus (QTL) mapping and genome-wide association studies (GWAS) have been extensively employed in crop resistance breeding research. These methods have identified resistance-related genes and genetic markers, offering a solid scientific basis and practical tools for resistance breeding. This review summarizes recent advances in QTL and GWAS applications for enhancing resistance to cyst nematodes (Heterodera glycines, H. filipjevi, and H. avenae), root-knot nematodes (Meloidogyne graminicola and M. incognita), and root-lesion nematodes (Pratylenchus spp.). It also evaluates the commercial deployment of resistance genes, discusses integrated breeding strategies, and highlights future research directions toward developing durable nematode-resistant crops. Full article