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141 Results Found

  • Communication
  • Open Access
22 Citations
9,467 Views
12 Pages

11 January 2013

In this study, three-day old mature biofilms of Escherichia coli were exposed once to either a temperate Shiga-toxin encoding phage (H-19B) or an obligatory lytic phage (T7), after which further dynamics in the biofilm were monitored. As such, it was...

  • Article
  • Open Access
3 Citations
2,555 Views
9 Pages

To explore how microbial interactions within the rhizosphere influence the diversity and functional roles of bacterial communities, we isolated 21 bacterial strains from soil samples collected near Rocky Branch Creek on the University of South Caroli...

  • Article
  • Open Access
10 Citations
4,160 Views
19 Pages

A prophage is a phage-related sequence that is integrated into a bacterial chromosome. Prophages play an important role in bacterial evolution, survival, and persistence. To understand the impact of Listeria prophages on their host genome organizatio...

  • Article
  • Open Access
9 Citations
4,345 Views
16 Pages

Moderate Seasonal Dynamics Indicate an Important Role for Lysogeny in the Red Sea

  • Ruba Abdulrahman Ashy,
  • Curtis A. Suttle and
  • Susana Agustí

Viruses are the most abundant microorganisms in marine environments and viral infections can be either lytic (virulent) or lysogenic (temperate phage) within the host cell. The aim of this study was to quantify viral dynamics (abundance and infection...

  • Article
  • Open Access
5 Citations
3,022 Views
19 Pages

30 November 2022

The study of the interaction between temperate phages and bacteria is vital to understand their role in the development of human diseases. In this study, a novel temperate Escherichia coli phage, vB_EcoP_ZX5, with a genome size of 39,565 bp, was isol...

  • Article
  • Open Access
4 Citations
4,159 Views
16 Pages

Inference of the Life Cycle of Environmental Phages from Genomic Signature Distances to Their Hosts

  • Vicente Arnau,
  • Wladimiro Díaz-Villanueva,
  • Jorge Mifsut Benet,
  • Paula Villasante,
  • Beatriz Beamud,
  • Paula Mompó,
  • Rafael Sanjuan,
  • Fernando González-Candelas,
  • Pilar Domingo-Calap and
  • Mária Džunková

19 May 2023

The environmental impact of uncultured phages is shaped by their preferred life cycle (lytic or lysogenic). However, our ability to predict it is very limited. We aimed to discriminate between lytic and lysogenic phages by comparing the similarity of...

  • Article
  • Open Access
23 Citations
4,153 Views
15 Pages

Large Phenotypic and Genetic Diversity of Prophages Induced from the Fish Pathogen Vibrio anguillarum

  • Daniel Castillo,
  • Nana Andersen,
  • Panos G. Kalatzis and
  • Mathias Middelboe

24 October 2019

Vibrio anguillarum is a marine pathogenic bacterium that causes vibriosis in fish and shellfish. Although prophage-like sequences have been predicted in V. anguillarum strains, many are not characterized, and it is not known if they retain the functi...

  • Article
  • Open Access
2,491 Views
12 Pages

Valp1, a Newly Identified Temperate Phage Facilitating Coexistence of Lysogenic and Non-Lysogenic Populations of Vibrio anguillarum

  • Manuel Arce,
  • Guillermo Venegas,
  • Karla Paez,
  • Simone Latz,
  • Paola Navarrete,
  • Mario Caruffo,
  • Carmen Feijoo,
  • Katherine García and
  • Roberto Bastías

Vibrio anguillarum is a pathogen for several fish and shellfish species. Its ecology is influenced by diverse factors, including bacteriophages. Here, we identify and characterize a new temperate bacteriophage (Valp1) of V. anguillarum. Valp1 is a my...

  • Article
  • Open Access
6 Citations
4,909 Views
23 Pages

Staying below the Radar: Unraveling a New Family of Ubiquitous “Cryptic” Non-Tailed Temperate Vibriophages and Implications for Their Bacterial Hosts

  • Panos G. Kalatzis,
  • Jesper Juel Mauritzen,
  • Caroline Sophie Winther-Have,
  • Slawomir Michniewski,
  • Andrew Millard,
  • Maria Ioanna Tsertou,
  • Pantelis Katharios and
  • Mathias Middelboe

15 February 2023

Bacteriophages are the most abundant biological entities in the oceans and play key roles in bacterial activity, diversity and evolution. While extensive research has been conducted on the role of tailed viruses (Class: Caudoviricetes), very little i...

  • Review
  • Open Access
26 Citations
7,325 Views
17 Pages

Temperate Bacteriophages—The Powerful Indirect Modulators of Eukaryotic Cells and Immune Functions

  • Martyna Cieślik,
  • Natalia Bagińska,
  • Ewa Jończyk-Matysiak,
  • Alicja Węgrzyn,
  • Grzegorz Węgrzyn and
  • Andrzej Górski

28 May 2021

Bacteriophages are natural biological entities that limit the growth and amplification of bacteria. They are important stimulators of evolutionary variability in bacteria, and currently are considered a weapon against antibiotic resistance of bacteri...

  • Review
  • Open Access
5 Citations
3,363 Views
18 Pages

Role of Lysogenic Phages in the Dissemination of Antibiotic Resistance Genes Applied in the Food Chain

  • Rafael Dorighello Cadamuro,
  • Mariana Alves Elois,
  • Giulia Von Tönnemann Pilati,
  • Beatriz Pereira Savi,
  • Leonardo Pessi,
  • Yasmin Ferreira Souza Hoffmann Jempierre,
  • David Rodríguez-Lázaro and
  • Gislaine Fongaro

21 March 2025

Bacteriophages, first discovered in 1915, have re-emerged as critical players in microbial ecosystems, particularly in food production. Their ability to lysogenize bacterial hosts raises concerns about their role in the horizontal transfer of antibio...

  • Feature Paper
  • Article
  • Open Access
16 Citations
7,854 Views
13 Pages

Mechanisms that Determine the Differential Stability of Stx+ and Stx Lysogens

  • Michael P. Colon,
  • Dolonchapa Chakraborty,
  • Yonatan Pevzner and
  • Gerald B. Koudelka

31 March 2016

Phages 933W, BAA2326, 434, and λ are evolutionarily-related temperate lambdoid phages that infect Escherichia coli. Although these are highly-similar phages, BAA2326 and 933W naturally encode Shiga toxin 2 (Stx+), but phage 434 and λ do not (Stx−). P...

  • Article
  • Open Access
8 Citations
4,388 Views
15 Pages

20 May 2020

Bacteriophage 80α is a representative of a class of temperate phages that infect Staphylococcus aureus and other Gram-positive bacteria. Many of these phages carry genes encoding toxins and other virulence factors. This phage, 80α, is als...

  • Communication
  • Open Access
20 Citations
4,166 Views
14 Pages

Lysogenization of a Lactococcal Host with Three Distinct Temperate Phages Provides Homologous and Heterologous Phage Resistance

  • Sofia Ruiz-Cruz,
  • Elvina Parlindungan,
  • Andrea Erazo Garzon,
  • Mona Alqarni,
  • Gabriele A. Lugli,
  • Marco Ventura,
  • Douwe van Sinderen and
  • Jennifer Mahony

Lactococcus lactis is the most widely exploited microorganism in global dairy fermentations. Lactococcal strains are described as typically harboring a number of prophages in their chromosomes. The presence of such prophages may provide both advantag...

  • Article
  • Open Access
4,550 Views
23 Pages

28 February 2020

The bacterial virus lambda (λ) is a temperate bacteriophage that can lysogenize host Escherichia coli (E. coli) cells. Lysogeny requires λ repressor, the cI gene product, which shuts off transcription of the phage genome. The λ N...

  • Article
  • Open Access
3 Citations
5,505 Views
12 Pages

An Efficient, Counter-Selection-Based Method for Prophage Curing in Pseudomonas aeruginosa Strains

  • Esther Shmidov,
  • Itzhak Zander,
  • Ilana Lebenthal-Loinger,
  • Sarit Karako-Lampert,
  • Sivan Shoshani and
  • Ehud Banin

21 February 2021

Prophages are bacteriophages in the lysogenic state, where the viral genome is inserted within the bacterial chromosome. They contribute to strain genetic variability and can influence bacterial phenotypes. Prophages are highly abundant among the str...

  • Article
  • Open Access
44 Citations
8,813 Views
19 Pages

Stumbling across the Same Phage: Comparative Genomics of Widespread Temperate Phages Infecting the Fish Pathogen Vibrio anguillarum

  • Panos G. Kalatzis,
  • Nanna Iben Rørbo,
  • Daniel Castillo,
  • Jesper Juel Mauritzen,
  • Jóhanna Jørgensen,
  • Constantina Kokkari,
  • Faxing Zhang,
  • Pantelis Katharios and
  • Mathias Middelboe

20 May 2017

Nineteen Vibrio anguillarum-specific temperate bacteriophages isolated across Europe and Chile from aquaculture and environmental sites were genome sequenced and analyzed for host range, morphology and life cycle characteristics. The phages were clas...

  • Article
  • Open Access
1,654 Views
15 Pages

9 September 2025

Multidrug-resistant bacterial infections pose a severe global health threat, highlighting the urgent need for innovative therapeutic options beyond traditional antibiotics. Phage therapy, which employs bacteriophages to infect and eradicate pathogeni...

  • Article
  • Open Access
1 Citations
1,814 Views
28 Pages

Dark Matter Carried by Sinorhizobium meliloti phiLM21-like Prophages

  • Maria E. Vladimirova,
  • Marina L. Roumiantseva,
  • Alla S. Saksaganskaia,
  • Alexandra P. Kozlova,
  • Victoria S. Muntyan and
  • Sergey P. Gaponov

6 September 2025

A comprehensive comparative analysis was conducted on the nucleotide and amino acid sequences of intact phiLM21-like prophages (phiLM21-LPhs), which currently represent the most prevalent prophages in Sinorhizobium meliloti—a symbiotic partner...

  • Article
  • Open Access
3 Citations
2,698 Views
20 Pages

3 February 2023

Antimicrobial resistance is rising as a major global public health threat and antibiotic resistance genes are widely spread among species, including human oral pathogens, e.g., Aggregatibacter actinomycetemcomitans. This Gram-negative, capnophilic, f...

  • Abstract
  • Open Access
1,803 Views
1 Page

Characteristic of a Distant Relative of Teseptimavirus Genus Phages That Acquired the Ability to Lysogenize Its Host

  • Agnieszka Fijałek,
  • Radosław Giziński,
  • Katarzyna Giermasińska-Buczek,
  • Urszula Gągała,
  • Jan Gawor,
  • Andrew M. Kropinski and
  • Małgorzata Łobocka

Pseudomonas syringae is a plant pathogen, which groups over 40 pathovars. Climate change and international trade facilitate the worldwide spread of pathogenic P. syringae strains. In recent decades, infections with P. syringae have been causing large...

  • Article
  • Open Access
3 Citations
4,771 Views
20 Pages

A Pseudomonas Lysogenic Bacteriophage Crossing the Antarctic and Arctic, Representing a New Genus of Autographiviridae

  • Zhenyu Liu,
  • Wenhui Jiang,
  • Cholsong Kim,
  • Xiaoya Peng,
  • Cong Fan,
  • Yingliang Wu,
  • Zhixiong Xie and
  • Fang Peng

Polar regions tend to support simple food webs, which are vulnerable to phage-induced gene transfer or microbial death. To further investigate phage-host interactions in polar regions and the potential linkage of phage communities between the two pol...

  • Article
  • Open Access
18 Citations
4,811 Views
21 Pages

10 June 2022

More than 20% of all Pseudomonas aeruginosa are infected with Pf4-related filamentous phage and although their role in virulence of P. aeruginosa strain PAO1 is well documented, its properties related to therapy are not elucidated in detail. The aim...

  • Article
  • Open Access
21 Citations
4,990 Views
17 Pages

15 July 2020

The lytic and lysogenic life cycles of marine phages are influenced by environmental conditions such as solar radiation, temperature, and host abundance. Temperature can regulate phage infection, but its role is difficult to discern in oligotrophic w...

  • Article
  • Open Access
16 Citations
8,417 Views
13 Pages

Fighting Fire with Fire: Phage Potential for the Treatment of E. coli O157 Infection

  • Cristina Howard-Varona,
  • Dean R. Vik,
  • Natalie E. Solonenko,
  • Yueh-Fen Li,
  • M. Consuelo Gazitua,
  • Lauren Chittick,
  • Jennifer K. Samiec,
  • Aubrey E. Jensen,
  • Paige Anderson and
  • Matthew B. Sullivan
  • + 3 authors

Hemolytic–uremic syndrome is a life-threating disease most often associated with Shiga toxin-producing microorganisms like Escherichia coli (STEC), including E. coli O157:H7. Shiga toxin is encoded by resident prophages present within this bact...

  • Article
  • Open Access
2 Citations
2,653 Views
16 Pages

Molecular Characterization of pBOq-IncQ and pBOq-95LK Plasmids of Escherichia coli BOq 01, a New Isolated Strain from Poultry Farming, Involved in Antibiotic Resistance

  • Armando Hernández-Mendoza,
  • Rosalba Salgado-Morales,
  • Abimael Morán-Vázquez,
  • David López-Torres,
  • Blanca Inés García-Gómez and
  • Edgar Dantán-González

The increase in antimicrobial resistance has raised questions about how to use these drugs safely, especially in veterinary medicine, animal nutrition, and agriculture. Escherichia coli is an important human and animal pathogen that frequently contai...

  • Article
  • Open Access
1 Citations
1,074 Views
15 Pages

Interactions between bacteria and bacteriophages are important for the maintenance of soil communities. In this study, we characterized the giant bacteriophages found within diverse soil bacteria and 14 additional phages isolated directly from soil s...

  • Article
  • Open Access
7 Citations
7,240 Views
16 Pages

Bacteriophage 434 Hex Protein Prevents RecA-Mediated Repressor Autocleavage

  • Paul Shkilnyj,
  • Michael P. Colon and
  • Gerald B. Koudelka

9 January 2013

In a λimm434 lysogen, two proteins are expressed from the integrated prophage. Both are encoded by the same mRNA whose transcription initiates at the PRM promoter. One protein is the 434 repressor, needed for the establishment and maintenance of lyso...

  • Article
  • Open Access
15 Citations
4,809 Views
34 Pages

The Isolation and Characterization of a Broad Host Range Bcep22-like Podovirus JC1

  • Carly M. Davis,
  • Marta K. Ruest,
  • Jamie H. Cole and
  • Jonathan J. Dennis

29 April 2022

Bacteriophage JC1 is a Podoviridae phage with a C1 morphotype, isolated on host strain Burkholderia cenocepacia Van1. Phage JC1 is capable of infecting an expansive range of Burkholderia cepacia complex (Bcc) species. The JC1 genome exhibits signific...

  • Opinion
  • Open Access
9 Citations
3,169 Views
8 Pages

The rehabilitation of lytic bacteriophages, as living and replicative biological therapeutic agents, is only 2 decades old in western countries, compared to other therapeutic approaches using chemicals and inactivated or alive biologicals. This paper...

  • Article
  • Open Access
66 Citations
11,683 Views
18 Pages

Isolation and Genome Characterization of the Virulent Staphylococcus aureus Bacteriophage SA97

  • Yoonjee Chang,
  • Hakdong Shin,
  • Ju-Hoon Lee,
  • Chul Jong Park,
  • Soon-Young Paik and
  • Sangryeol Ryu

1 October 2015

A novel bacteriophage that infects S. aureus, SA97, was isolated and characterized. The phage SA97 belongs to the Siphoviridae family, and the cell wall teichoic acid (WTA) was found to be a host receptor of the phage SA97. Genome analysis revealed t...

  • Article
  • Open Access
9 Citations
7,577 Views
18 Pages

7 March 2018

The temperate bacteriophage lambda (λ) CII protein is a positive regulator of transcription from promoter pE, a component of the lysogenic response. The expression of cII was examined in vectors devoid of phage transcription-modulating elements. Thei...

  • Article
  • Open Access
4 Citations
4,176 Views
17 Pages

Are Bordetella bronchiseptica Siphoviruses (Genus Vojvodinavirus) Appropriate for Phage Therapy—Bacterial Allies or Foes?

  • Aleksandra Petrovic Fabijan,
  • Verica Aleksic Sabo,
  • Damir Gavric,
  • Zsolt Doffkay,
  • Gábor Rakhely and
  • Petar Knezevic

31 August 2021

Bordetella bronchiseptica is a respiratory animal pathogen that shows growing resistance to commonly used antibiotics, which has necessitated the examination of new antimicrobials, including bacteriophages. In this study, we examined the previously i...

  • Feature Paper
  • Article
  • Open Access
3 Citations
3,769 Views
14 Pages

Analysis of Infection Time Courses Shows CII Levels Determine the Frequency of Lysogeny in Phage 186

  • Nan Hao,
  • Dylan Agnew,
  • Sandeep Krishna,
  • Ian B. Dodd and
  • Keith E. Shearwin

29 September 2021

Engineered phage with properties optimised for the treatment of bacterial infections hold great promise, but require careful characterisation by a number of approaches. Phage–bacteria infection time courses, where populations of bacteriophage and bac...

  • Article
  • Open Access
2 Citations
2,128 Views
14 Pages

22 August 2023

Filamentous bacteriophages are lysogenic and pseudo-lysogenic viruses that do not lyse their host but are often continuously secreted from the infected cell. They belong to the order Tubulavirales, which encompasses three families, with the Inovirida...

  • Article
  • Open Access
28 Citations
5,412 Views
16 Pages

16 April 2019

Viruses are ubiquitous in natural systems. By influencing bacterial abundance (BA) and community structure through lysis-lysogenic conversion, viruses are involved in various ecological processes. In agricultural management, nitrogen addition and irr...

  • Article
  • Open Access
1 Citations
1,141 Views
12 Pages

13 February 2025

Background: Persistent methicillin-resistant Staphylococcus aureus (MRSA) endovascular infections present a significant clinical therapeutic challenge. Prophages are increasingly recognized as important genetic factors influencing the pathogenicity o...

  • Article
  • Open Access
9 Citations
3,617 Views
14 Pages

Phage Cocktail Development against Aeromonas salmonicida subsp. salmonicida Strains Is Compromised by a Prophage

  • Nava Hosseini,
  • Valérie E. Paquet,
  • Mahdi Chehreghani,
  • Sylvain Moineau and
  • Steve J. Charette

8 November 2021

Aquaculture is a rapidly growing food production sector. Fish farmers are experiencing increasing problems with antibiotic resistance when fighting against pathogenic bacteria such as Aeromonas salmonicida subsp. salmonicida, the causative agent of f...

  • Feature Paper
  • Article
  • Open Access
643 Views
23 Pages

31 March 2025

The abundance level of the lambda phage repressor is randomly fluctuated by the influence of multiple ligand signals, inducing its phenotypic diversity. However, the mechanism of how the memory lag of fluctuations and the nonlinear structure of the e...

  • Article
  • Open Access
1,515 Views
26 Pages

Flow cytometry typically reveals two heterotrophic prokaryote (HP) subpopulations when stained with SYBR Green: high nucleic acid (HNA) and low nucleic acid (LNA) cells. Evidence suggests these populations have distinct physiological and ecological r...

  • Review
  • Open Access
6 Citations
4,710 Views
20 Pages

26 February 2025

Phages, the most abundant and diverse lifeforms on Earth, require strict parasitism for survival. During infection, temperate phages integrate both intracellular and extracellular host information to decide between lysis and lysogeny for replication....

  • Article
  • Open Access
15 Citations
9,808 Views
22 Pages

Survival Strategies of Streptococcus pyogenes in Response to Phage Infection

  • Dior Beerens,
  • Sandra Franch-Arroyo,
  • Timothy J. Sullivan,
  • Christian Goosmann,
  • Volker Brinkmann and
  • Emmanuelle Charpentier

2 April 2021

Bacteriophages exert strong evolutionary pressure on their microbial hosts. In their lytic lifecycle, complete bacterial subpopulations are utilized as hosts for bacteriophage replication. However, during their lysogenic lifecycle, bacteriophages can...

  • Review
  • Open Access
12 Citations
6,088 Views
16 Pages

Lysogeny in Streptococcus pneumoniae

  • Geneviève Garriss and
  • Birgitta Henriques-Normark

Bacterial viruses, or bacteriophages, are major contributors to the evolution, pathogenesis and overall biology of their host bacteria. During their life cycle, temperate bacteriophages form stable associations with their host by integrating into the...

  • Article
  • Open Access
4 Citations
2,221 Views
13 Pages

Diversity and Complexity of CTXΦ and Pre-CTXΦ Families in Vibrio cholerae from Seventh Pandemic

  • Xiaorui Li,
  • Yu Han,
  • Wenxuan Zhao,
  • Yue Xiao,
  • Siyu Huang,
  • Zhenpeng Li,
  • Fenxia Fan,
  • Weili Liang and
  • Biao Kan

CTXΦ is a lysogenic filamentous phage that carries the genes encoding cholera toxin (ctxAB), the main virulence factor of Vibrio cholerae. The toxigenic conversion of environmental V. cholerae strains through CTXΦ lysogenic infection is crucial for t...

  • Review
  • Open Access
53 Citations
8,645 Views
14 Pages

The Role of Temperate Phages in Bacterial Pathogenicity

  • Vimathi S. Gummalla,
  • Yujie Zhang,
  • Yen-Te Liao and
  • Vivian C. H. Wu

Bacteriophages are viruses that infect bacteria and archaea and are classified as virulent or temperate phages based on their life cycles. A temperate phage, also known as a lysogenic phage, integrates its genomes into host bacterial chromosomes as a...

  • Review
  • Open Access
84 Citations
14,768 Views
20 Pages

28 August 2022

Phages are viruses that infect bacteria. They affect various microbe-mediated processes that drive biogeochemical cycling on a global scale. Their influence depends on whether the infection is lysogenic or lytic. Temperate phages have the potential t...

  • Review
  • Open Access
43 Citations
8,056 Views
17 Pages

Bacteriophage and Bacterial Susceptibility, Resistance, and Tolerance to Antibiotics

  • Qingquan Chen,
  • Tejas Dharmaraj,
  • Pamela C. Cai,
  • Elizabeth B. Burgener,
  • Naomi L. Haddock,
  • Andy J. Spakowitz and
  • Paul L. Bollyky

Bacteriophages, viruses that infect and replicate within bacteria, impact bacterial responses to antibiotics in complex ways. Recent studies using lytic bacteriophages to treat bacterial infections (phage therapy) demonstrate that phages can promote...

  • Review
  • Open Access
79 Citations
17,366 Views
50 Pages

9 July 2014

Many bacteriophages (phages) have been widely studied due to their major role in virulence evolution of bacterial pathogens. However, less attention has been paid to phages preying on bacteria from the Bacillus cereus group and their contribution to...

  • Review
  • Open Access
403 Citations
34,519 Views
23 Pages

For a bacteriophage to be useful for phage therapy it must be both isolated from the environment and shown to have certain characteristics beyond just killing strains of the target bacterial pathogen. These include desirable characteristics such as a...

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