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250 Results Found

  • Article
  • Open Access
6 Citations
6,384 Views
11 Pages

6 October 2020

The exit wave is the state of a uniform plane incident electron wave exiting immediately after passing through a specimen and before the atomic-resolution transmission electron microscopy (ARTEM) image is modified by the aberration of the optical sys...

  • Article
  • Open Access
2 Citations
1,936 Views
13 Pages

11 March 2024

RNAs play crucial roles in various essential biological functions, including catalysis and gene regulation. Despite the widespread use of coarse-grained (CG) models/simulations to study RNA 3D structures and dynamics, their direct application is chal...

  • Article
  • Open Access
33 Citations
9,676 Views
22 Pages

3 June 2011

The sparse decomposition based on matching pursuit is an adaptive sparse expression method for signals. This paper proposes an idea concerning a composite dictionary multi-atom matching decomposition and reconstruction algorithm, and the introduction...

  • Article
  • Open Access
2 Citations
3,413 Views
16 Pages

Atomic Network-Based DOA Estimation Using Low-Bit ADC

  • Shuran Sheng,
  • Peng Chen,
  • Yuxuan Yao,
  • Lenan Wu and
  • Zhimin Chen

In the direction of arrival (DOA) estimation problem, when a low-bit analog to digital converter (ADC) is used, the estimation performance severely deteriorates. In this paper, the DOA estimation problem is considered in a low-cost direction finding...

  • Article
  • Open Access
2 Citations
2,097 Views
13 Pages

deepBBQ: A Deep Learning Approach to the Protein Backbone Reconstruction

  • Justyna D. Kryś,
  • Maksymilian Głowacki,
  • Piotr Śmieja and
  • Dominik Gront

14 November 2024

Coarse-grained models have provided researchers with greatly improved computational efficiency in modeling structures and dynamics of biomacromolecules, but, to be practically useful, they need fast and accurate conversion methods back to the all-ato...

  • Article
  • Open Access
2 Citations
2,337 Views
19 Pages

5 November 2023

This paper proposes a fast direction of arrival (DOA) estimation method based on positive incremental modified Cholesky decomposition atomic norm minimization (PI-CANM) for augmented coprime array sensors. The approach incorporates coprime sampling o...

  • Article
  • Open Access
2 Citations
4,667 Views
10 Pages

13 August 2018

Precipitation is one of the most important influences on microstructural evolution during thermomechanical processing (TMCP) of micro-alloyed steels. Due to precipitation, pinning of prior austenite grain (PAG) boundaries can occur. To understand the...

  • Article
  • Open Access
2 Citations
3,235 Views
27 Pages

Optimizing Multi-Camera Mobile Mapping Systems with Pose Graph and Feature-Based Approaches

  • Ahmad El-Alailyi,
  • Luca Morelli,
  • Paweł Trybała,
  • Francesco Fassi and
  • Fabio Remondino

13 August 2025

Multi-camera Visual Simultaneous Localization and Mapping (V-SLAM) increases spatial coverage through multi-view image streams, improving localization accuracy and reducing data acquisition time. Despite its speed and generally robustness, V-SLAM oft...

  • Article
  • Open Access
5 Citations
2,577 Views
15 Pages

19 December 2022

Embedding energetically stable single metal atoms in the surface of Pt nanocatalysts exposed to varied temperature (T) and hydrogen pressure (P) could open up new possibilities in selective and dynamical engineering of alloyed Pt catalysts, particula...

  • Article
  • Open Access
6 Citations
4,031 Views
20 Pages

24 May 2019

An underdetermined direction of arrival (DOA) estimation method of wideband linear frequency modulated (LFM) signals is proposed without grid mismatch. According to the concentration property of LFM signal in the fractional Fourier (FRF) domain, the...

  • Article
  • Open Access
8 Citations
9,079 Views
19 Pages

Atomic Resolution Structure of the Oncolytic Parvovirus LuIII by Electron Microscopy and 3D Image Reconstruction

  • Nikéa Pittman,
  • Adam Misseldine,
  • Lorena Geilen,
  • Sujata Halder,
  • J. Kennon Smith,
  • Justin Kurian,
  • Paul Chipman,
  • Mandy Janssen,
  • Robert Mckenna and
  • Mavis Agbandje-McKenna
  • + 4 authors

30 October 2017

LuIII, a protoparvovirus pathogenic to rodents, replicates in human mitotic cells, making it applicable for use to kill cancer cells. This virus group includes H-1 parvovirus (H-1PV) and minute virus of mice (MVM). However, LuIII displays enhanced on...

  • Article
  • Open Access
365 Views
13 Pages

22 February 2026

Dissolution of iron oxides in water plays a critical role in corrosion, mineral cycling, and surface reactivity; yet, the atomic-scale mechanisms governing Fe release remain poorly understood. Here, we employ ab initio molecular dynamics and well-tem...

  • Review
  • Open Access
17 Citations
11,344 Views
32 Pages

27 August 2010

Nano-structuring of the surface caused by adsorption of molecules or atoms and by the reaction of surface atoms with adsorbed species are reviewed from a chemistry viewpoint. Self-assembly of adsorbed species is markedly influenced by weak mutual int...

  • Article
  • Open Access
2 Citations
1,716 Views
13 Pages

29 May 2024

It was demonstrated by ab initio calculations that energy optimization in the reconstruction of semiconductor surfaces is controlled by the global charge balance. The charge control was discovered during simulations of the influence of heavy doping i...

  • Article
  • Open Access
8 Citations
3,843 Views
12 Pages

3 February 2020

The signal reconstruction quality has become a critical factor in compressed sensing at present. This paper proposes a matching pursuit algorithm for backtracking regularization based on energy sorting. This algorithm uses energy sorting for secondar...

  • Article
  • Open Access
1 Citations
1,515 Views
11 Pages

Density Functional Theory Study on Structure and Properties of Sulfurized Cerussite (110) Surface

  • Cong Han,
  • Yuxin Ao,
  • Yanbai Shen,
  • Sikai Zhao,
  • Qiang Zhao and
  • Shijie Zhou

7 August 2024

Cerussite is an essential lead oxide mineral with increasing economic importance as lead sulfide resources deplete. This study utilizes density functional theory (DFT) to investigate the structural and electronic properties of the sulfurized cerussit...

  • Article
  • Open Access
7 Citations
3,539 Views
22 Pages

21 May 2019

In the existing stochastic gradient matching pursuit algorithm, the preliminary atomic set includes atoms that do not fully match the original signal. This weakens the reconstruction capability and increases the computational complexity. To solve the...

  • Communication
  • Open Access
2,150 Views
9 Pages

Reconstructed Cd(0001) Surface Induced by Adsorption of Triphenyl Bismuth

  • Mengmeng Bai,
  • Zuo Li,
  • Mingxia Shi,
  • Minlong Tao,
  • Kai Sun,
  • Xiaotian Yang,
  • Yufeng Zhang and
  • Junzhong Wang

8 February 2023

Largish molecules on metal surfaces may act as not only the building blocks of 2D self-assemblies, but also as the template to reshape the metal surfaces. Here, we report the molecular adsorption-induced formation of the periodic nanostripe arrays of...

  • Article
  • Open Access
1 Citations
4,927 Views
8 Pages

Influence of the Localization of Ge Atoms within the Si(001)(4 × 2) Surface Layer on Semicore One-Electron States

  • Olha I. Tkachuk,
  • Maria I. Terebinskaya,
  • Victor V. Lobanov and
  • Alexei V. Arbuznikov

Adsorption complexes of germanium on the reconstructed Si(001)(4 × 2) surface have been simulated by the Si96Ge2Н84 cluster. For Ge atoms located on the surface layer, DFT calculations (B3LYP/6-31G**) of their 3d semicore-level energies have shown a...

  • Article
  • Open Access
4 Citations
1,952 Views
15 Pages

3 July 2022

In view of the fact that most of the traditional algorithms for reconstructing underwater acoustic signals from low-dimensional compressed data are based on known sparsity, a sparsity adaptive and variable step-size matching pursuit (SAVSMP) algorith...

  • Article
  • Open Access
1 Citations
1,840 Views
12 Pages

14 April 2023

Segregation of foreign atoms on a solid substrate in a liquid metal modifies the geometry and chemistry of the substrate surface and, correspondingly, its potency to nucleate a solid metal. We here investigate the effects of the segregation of alkali...

  • Article
  • Open Access
2,493 Views
15 Pages

16 February 2023

In order to significantly reduce the computing time while, at the same time, keeping the accuracy and precision when determining the local values of the density and effective atomic number necessary for identifying various organic material, including...

  • Feature Paper
  • Review
  • Open Access
12 Citations
4,752 Views
26 Pages

27 August 2023

Single particle cryo-electron microscopy (cryo-EM) has emerged as the prevailing method for near-atomic structure determination, shedding light on the important molecular mechanisms of biological macromolecules. However, the inherent dynamics and str...

  • Article
  • Open Access
11 Citations
3,137 Views
20 Pages

An Image Focusing Method for Sparsity-Driven Radar Imaging of Rotating Targets

  • Ngoc Hung Nguyen,
  • Kutluyıl Doğançay,
  • Hai-Tan Tran and
  • Paul Berry

5 June 2018

This paper presents a new image focusing algorithm for sparsity-driven radar imaging of rotating targets. In the general formulation of off-grid scatterers, the sparse reconstruction algorithms may result in blurred and low-contrast images due to dic...

  • Article
  • Open Access
16 Citations
5,690 Views
38 Pages

Visualizing Conformational Space of Functional Biomolecular Complexes by Deep Manifold Learning

  • Zhaolong Wu,
  • Enbo Chen,
  • Shuwen Zhang,
  • Yinping Ma and
  • Youdong Mao

The cellular functions are executed by biological macromolecular complexes in nonequilibrium dynamic processes, which exhibit a vast diversity of conformational states. Solving the conformational continuum of important biomolecular complexes at the a...

  • Article
  • Open Access
5 Citations
3,373 Views
19 Pages

“Romeo and Juliet: A Love out of the Shell”: Using Storytelling to Address Students’ Misconceptions and Promote Modeling Competencies in Science

  • Ginevra Aquilina,
  • Umberto Dello Iacono,
  • Lucia Gabelli,
  • Luca Picariello,
  • Giacomo Scettri and
  • Giulia Termini

25 February 2024

In this paper, we present the design of a Teaching—Learning Sequence (TLS) based on storytelling. The TLS has a twofold goal: to address students’ misconceptions about atomic models and to promote students’ development of modeling s...

  • Article
  • Open Access
6 Citations
3,106 Views
6 Pages

Improvement of the NIFS Atom and Molecular Database

  • Masahiko Emoto,
  • Izumi Murakami,
  • Daiji Kato,
  • Masanobu Yoshida,
  • Masatoshi Kato and
  • Setsuo Imazu

11 September 2019

The NIFS (National Institute for Fusion Science) Atom and Molecular Database, which has been available online since 1997, is a numerical atomic and molecular database of collision processes that is important for fusion research. This database provide...

  • Article
  • Open Access
2 Citations
2,498 Views
15 Pages

Effect of Graphene on Nickel Surface Relaxation: Molecular Dynamics Simulation

  • Sergiy Konorev,
  • Vitalii Yanchuk,
  • Ivan Kruhlov,
  • Andrii Orlov,
  • Sergii Sidorenko,
  • Igor Vladymyrskyi,
  • Sergey Prikhodko and
  • Svitlana Voloshko

16 September 2023

The effect of graphene (GR) on Ni surface relaxation and reconstruction in three different substrate orientations, {111}, {001}, and {011}, at two different temperatures, 300 K and 400 K, was studied using molecular dynamics simulation. The change in...

  • Article
  • Open Access
14 Citations
4,230 Views
10 Pages

11 May 2018

A successful application of a hot dip coating process that coats aluminum (Al) on aluminum nitride (AlN) ceramics, revealed that Al had a perfect wettability to the ceramics under specific circumstances, which was different from previous reports. In...

  • Article
  • Open Access
5 Citations
3,449 Views
14 Pages

In this paper, we investigate the embryonic stage of oxidation of an epi Ge(001)-2 × 1 by atomic oxygen and molecular O2 via synchrotron radiation photoemission. The topmost buckled surface with the up- and down-dimer atoms, and the first subsu...

  • Feature Paper
  • Article
  • Open Access
13 Citations
5,763 Views
12 Pages

Alloying Element Segregation and Grain Boundary Reconstruction, Atomistic Modeling

  • Lidia Karkina,
  • Iliya Karkin,
  • Andrey Kuznetsov and
  • Yuri Gornostyrev

6 December 2019

Grain boundary (GB) segregation is an important phenomenon that affects many physical properties, as well as microstructure of polycrystals. The segregation of solute atoms on GBs and its effect on GB structure in Al were investigated using two appro...

  • Article
  • Open Access
19 Citations
3,252 Views
8 Pages

13 September 2021

The process of reconstruction of attosecond beating by interference of two-photon transitions (RABBITT) reveals the target atom electronic structure when one of the transitions proceeds from below the ionization threshold. Such an under-threshold RAB...

  • Article
  • Open Access
1 Citations
1,689 Views
13 Pages

Theoretical Exploration of Properties of Iron–Silicon Interface Constructed by Depositing Fe on Si(111)-(7×7)

  • Jun-Qing Yin,
  • Yan-Ping Zhang,
  • Yong You,
  • Zhen-Hua Wang,
  • Jian-Qiang Zhao and
  • Qing Peng

19 October 2023

Exploring the properties of magnetic metal on the semiconductor surface is of great significance for the application of magnetic recording materials. Herein, DFT calculations are carried out to explore the properties of the iron–silicon interfa...

  • Article
  • Open Access
12 Citations
4,785 Views
12 Pages

16 February 2023

There is a growing trend towards the development of high resolution and multiplexing metasurface holograms. In this paper, we propose the reconstruction of polarization multiplexing terahertz (THz) holographic images based on transmissive metasurface...

  • Article
  • Open Access
9 Citations
7,493 Views
25 Pages

9 September 2014

This paper presents a new method for a composite dictionary matching pursuit algorithm, which is applied to vibration sensor signal feature extraction and fault diagnosis of a gearbox. Three advantages are highlighted in the new method. First, the co...

  • Article
  • Open Access
4 Citations
4,318 Views
12 Pages

19 September 2019

In the dual-polarized radar system, the horizontally and vertically polarized signals can be exploited to improve the direction of arrival (DOA) estimation performance. In this paper, the DOA estimation problem is considered in the dual-polarized rad...

  • Article
  • Open Access
3 Citations
3,494 Views
10 Pages

Quasiprobability Distribution Functions from Fractional Fourier Transforms

  • Jorge A. Anaya-Contreras,
  • Arturo Zúñiga-Segundo and
  • Héctor M. Moya-Cessa

7 March 2019

We show, in a formal way, how a class of complex quasiprobability distribution functions may be introduced by using the fractional Fourier transform. This leads to the Fresnel transform of a characteristic function instead of the usual Fourier transf...

  • Article
  • Open Access
2 Citations
1,571 Views
21 Pages

A Reduced Sparse Dictionary Reconstruction Algorithm Based on Grid Selection

  • Zhiqi Gao,
  • Caimei Zhao,
  • Pingping Huang,
  • Wei Xu and
  • Weixian Tan

24 February 2024

A sparse dictionary reconstruction algorithm based on grid selection is introduced to solve the grid mismatch when using the sparse recovery space time adaptive processing (SR-STAP) algorithm. First, the atom most closely related to clutter is select...

  • Article
  • Open Access
3 Citations
2,399 Views
10 Pages

23 August 2022

How in situ structural reconstructions affect the hydrogen evolution reaction (HER) activity of small Pd clusters is a long-standing problem in the field of heterogeneous catalysis. Herein, we reveal the structural evolution of Pdn (n = 6, 19, 44) cl...

  • Article
  • Open Access
18 Citations
5,685 Views
26 Pages

Non-Local SVD Denoising of MRI Based on Sparse Representations

  • Nallig Leal,
  • Eduardo Zurek and
  • Esmeide Leal

10 March 2020

Magnetic Resonance (MR) Imaging is a diagnostic technique that produces noisy images, which must be filtered before processing to prevent diagnostic errors. However, filtering the noise while keeping fine details is a difficult task. This paper prese...

  • Article
  • Open Access
5 Citations
2,689 Views
16 Pages

15 March 2024

Although the Al2Fe phase has similar decagonal-like atomic arrangements as that of the orthorhombic Al5Fe2 phase, no evidence for intergrowth samples of Al2Fe and Al5Fe2 has been reported. In the present work, the co-existence of Al2Fe and Al5Fe2 pha...

  • Communication
  • Open Access
15 Citations
3,740 Views
8 Pages

An Integrated Single-Beam Three-Axis High-Sensitivity Magnetometer

  • Shengran Su,
  • Zhenyuan Xu,
  • Xiang He,
  • Chanling Yin,
  • Miao Kong,
  • Xuyuan Zhang,
  • Yi Ruan,
  • Kan Li and
  • Qiang Lin

15 March 2023

Three-axis atomic magnetometers have great advantages for interpreting information conveyed by magnetic fields. Here, we demonstrate a compact construction of a three-axis vector atomic magnetometer. The magnetometer is operated with a single laser b...

  • Article
  • Open Access
1 Citations
2,140 Views
14 Pages

14 May 2025

We discuss an extension of the Single-Active-Electron (SAE) approximation in atoms by allowing the model potential to depend on the angular-momentum quantum number . We refer to this extension as the -SAE approximation. The main ideas b...

  • Article
  • Open Access
6 Citations
4,321 Views
38 Pages

26 August 2020

Increased data acquisition by uncalibrated, heterogeneous digital sensor systems such as smartphones present new challenges. Binary metrics are proposed for the quantification of cyber-physical signal characteristics and features, and a standardized...

  • Feature Paper
  • Article
  • Open Access
917 Views
13 Pages

6 January 2026

Atomic-scale strain is the basis of a material’s macroscopic deformation behavior. The current measure of atomic-scale strain in the form of the Green–Lagrange tensor loses its physical meaning beyond the yield point, as atomic neighborho...

  • Article
  • Open Access
6 Citations
6,603 Views
16 Pages

Sparse Reconstruction for Temperature Distribution Using DTS Fiber Optic Sensors with Applications in Electrical Generator Stator Monitoring

  • João Paulo Bazzo,
  • Daniel Rodrigues Pipa,
  • Erlon Vagner Da Silva,
  • Cicero Martelli and
  • Jean Carlos Cardozo da Silva

7 September 2016

This paper presents an image reconstruction method to monitor the temperature distribution of electric generator stators. The main objective is to identify insulation failures that may arise as hotspots in the structure. The method is based on temper...

  • Article
  • Open Access
18 Citations
8,975 Views
13 Pages

Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular Dynamics

  • Jacek Wabik,
  • Sebastian Kmiecik,
  • Dominik Gront,
  • Maksim Kouza and
  • Andrzej Koliński

10 May 2013

We describe a combination of all-atom simulations with CABS, a well-established coarse-grained protein modeling tool, into a single multiscale protocol. The simulation method has been tested on the C-terminal beta hairpin of protein G, a model syste...

  • Article
  • Open Access
1 Citations
857 Views
10 Pages

Orientation Relationships and Interface Structuring in Au-Seeded TiO2 Nanowires

  • Adel M. Abuamr,
  • Minghui Lin,
  • Yushun Liu and
  • Guozhen Zhu

28 August 2025

The Au–TiO2 interface plays a critical role in heterogeneous catalysis and nanostructure synthesis relevant to renewable energy applications. Using Au-seeded TiO2 nanowires as the model system, we observe that, in addition to the commonly repor...

  • Article
  • Open Access
3 Citations
2,608 Views
22 Pages

Gridless DOA Estimation with Extended Array Aperture in Automotive Radar Applications

  • Pengyu Jiang,
  • Silin Gao,
  • Jie Zhao,
  • Zhe Zhang and
  • Bingchen Zhang

26 December 2024

Millimeter-wave automotive radar has become an essential tool for autonomous driving, providing reliable sensing capabilities under various environmental conditions. To reduce hardware size and cost, sparse arrays are widely employed in automotive ra...

  • Article
  • Open Access
2 Citations
5,223 Views
17 Pages

27 February 2016

Real-time observation of three-dimensional (3D) information has great significance in nanotechnology. However, normal nanometer scale observation techniques, including transmission electron microscopy (TEM), and scanning probe microscopy (SPM), have...

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