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154 Results Found

  • Article
  • Open Access
5 Citations
2,703 Views
16 Pages

Docking and Electronic Structure of Rutin, Myricetin, and Baicalein Targeting 3CLpro

  • Sergio A. de S. Farias,
  • Kelvyn M. L. Rocha,
  • Érica C. M. Nascimento,
  • Rafael do C. C. de Jesus,
  • Paulo R. Neres and
  • João B. L. Martins

12 October 2023

Understanding the role of 3CLpro protease for SARS-CoV-2 replication and knowing the potential of flavonoid molecules like rutin, myricetin, and baicalein against 3CLpro justify an investigation into their inhibition. This study investigates possible...

  • Article
  • Open Access
59 Citations
7,685 Views
18 Pages

Computational Studies of SARS-CoV-2 3CLpro: Insights from MD Simulations

  • Alessandro Grottesi,
  • Neva Bešker,
  • Andrew Emerson,
  • Candida Manelfi,
  • Andrea R. Beccari,
  • Francesco Frigerio,
  • Erik Lindahl,
  • Carmen Cerchia and
  • Carmine Talarico

Given the enormous social and health impact of the pandemic triggered by severe acute respiratory syndrome 2 (SARS-CoV-2), the scientific community made a huge effort to provide an immediate response to the challenges posed by Coronavirus disease 201...

  • Article
  • Open Access
488 Views
41 Pages

Marine Streptomyces-Derived Lipids Inhibit SARS-CoV-2 3CLpro Through In Vitro and Predicted Multi-Site Binding Mechanisms

  • Doralyn S. Dalisay,
  • Jomari C. Mateo,
  • Jade Joshua R. Teodosio,
  • Leighiara S. de Guzman,
  • Neaven Bon Joy M. Marcial,
  • Dion Paul C. Caspe,
  • Lex Aliko P. Balida and
  • Jamia Azdina Jamal

10 February 2026

Background: The SARS-CoV-2 3CLpro is essential for viral replication and an attractive target for antiviral intervention. While most strategies target the catalytic site, recent studies suggest that the dimerization interface and cryptic allosteric p...

  • Article
  • Open Access
10 Citations
2,843 Views
25 Pages

Structure Activity Relationship and Molecular Docking of Some Quinazolines Bearing Sulfamerazine Moiety as New 3CLpro, cPLA2, sPLA2 Inhibitors

  • Mohammed Abdalla Hussein,
  • Rita M. Borik,
  • Mohamed S. Nafie,
  • Heba M. Abo-Salem,
  • Sylvia A. Boshra and
  • Zahraa N. Mohamed

14 August 2023

The current work was conducted to synthesize several novel anti-inflammatory quinazolines having sulfamerazine moieties as new 3CLpro, cPLA2, and sPLA2 inhibitors. The thioureido derivative 3 was formed when compound 2 was treated with sulfamerazine....

  • Article
  • Open Access
3 Citations
3,850 Views
15 Pages

17 April 2023

In the course of SARS-CoV-2 infection, the 3CL or nsp5 protease plays a pivotal role as the most important viral protease required for the maturation of viral proteins during host infection. Herein, we simulated for 500 ns 3CLproWT, 3CLproH41A, 3CLpr...

  • Review
  • Open Access
21 Citations
4,424 Views
20 Pages

3-Chymotrypsin-like Protease (3CLpro) of SARS-CoV-2: Validation as a Molecular Target, Proposal of a Novel Catalytic Mechanism, and Inhibitors in Preclinical and Clinical Trials

  • Vitor Martins de Freitas Amorim,
  • Eduardo Pereira Soares,
  • Anielle Salviano de Almeida Ferrari,
  • Davi Gabriel Salustiano Merighi,
  • Robson Francisco de Souza,
  • Cristiane Rodrigues Guzzo and
  • Anacleto Silva de Souza

24 May 2024

Proteases represent common targets in combating infectious diseases, including COVID-19. The 3-chymotrypsin-like protease (3CLpro) is a validated molecular target for COVID-19, and it is key for developing potent and selective inhibitors for inhibiti...

  • Review
  • Open Access
3 Citations
4,771 Views
28 Pages

Mechanistic Insights into the Mutational Landscape of the Main Protease/3CLPro and Its Impact on Long-Term COVID-19/SARS-CoV-2 Management

  • Aganze Gloire-Aimé Mushebenge,
  • Samuel Chima Ugbaja,
  • Nonjabulo Ntombikhona Magwaza,
  • Nonkululeko Avril Mbatha,
  • Tambwe Willy Muzumbukilwa,
  • Mukanda Gedeon Kadima,
  • Fave Yohanna Tata,
  • Mthokosizi Bongani Nxumalo,
  • Riziki Ghislain Manimani and
  • Hezekiel M. Kumalo
  • + 5 authors

The main proteinase (Mpro), or 3CLpro, is a critical enzyme in the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) lifecycle and is responsible for breaking down and releasing vital functional viral proteins crucial for virus development...

  • Article
  • Open Access
1,277 Views
24 Pages

Hypericin Suppresses SARS-CoV-2 Replication and Synergizes with Antivirals via Dual Targeting of RdRp and 3CLpro

  • Helena da Silva Souza,
  • Jéssica Santa Cruz Carvalho Martins,
  • Thiagos das Chagas Sousa,
  • Saiqa Sardar,
  • Natalia Fintelman-Rodrigues,
  • Lina Silva-Trujillo,
  • Thiago Moreno Lopes e Souza,
  • Marilda Mendonça Siqueira,
  • Jorge Hernandes Fernandes and
  • Aline da Rocha Matos

The continuous emergence of SARS-CoV-2 variants underscores the need for novel antiviral candidates. Hypericin (HY), a compound derived from Hypericum perforatum, exhibited potent in vitro activity against SARS-CoV-2 in Vero E6 cells, with low cytoto...

  • Article
  • Open Access
68 Citations
7,832 Views
17 Pages

Structural and Biochemical Analysis of the Dual Inhibition of MG-132 against SARS-CoV-2 Main Protease (Mpro/3CLpro) and Human Cathepsin-L

  • Elisa Costanzi,
  • Maria Kuzikov,
  • Francesca Esposito,
  • Simone Albani,
  • Nicola Demitri,
  • Barbara Giabbai,
  • Marianna Camasta,
  • Enzo Tramontano,
  • Giulia Rossetti and
  • Paola Storici
  • + 1 author

29 October 2021

After almost two years from its first evidence, the COVID-19 pandemic continues to afflict people worldwide, highlighting the need for multiple antiviral strategies. SARS-CoV-2 main protease (Mpro/3CLpro) is a recognized promising target for the deve...

  • Article
  • Open Access
8 Citations
2,756 Views
13 Pages

Identification of Darunavir Derivatives for Inhibition of SARS-CoV-2 3CLpro

  • Ling Ma,
  • Yongli Xie,
  • Mei Zhu,
  • Dongrong Yi,
  • Jianyuan Zhao,
  • Saisai Guo,
  • Yongxin Zhang,
  • Jing Wang,
  • Quanjie Li and
  • Shan Cen
  • + 1 author

16 December 2022

The effective antiviral agents that treat severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are urgently needed around the world. The 3C-like protease (3CLpro) of SARS-CoV-2 plays a pivotal role in virus replication; it also has become an...

  • Article
  • Open Access
21 Citations
5,956 Views
14 Pages

Prioritisation of Compounds for 3CLpro Inhibitor Development on SARS-CoV-2 Variants

  • Marko Jukič,
  • Blaž Škrlj,
  • Gašper Tomšič,
  • Sebastian Pleško,
  • Črtomir Podlipnik and
  • Urban Bren

COVID-19 represents a new potentially life-threatening illness caused by severe acute respiratory syndrome coronavirus 2 or SARS-CoV-2 pathogen. In 2021, new variants of the virus with multiple key mutations have emerged, such as B.1.1.7, B.1.351, P....

  • Article
  • Open Access
6 Citations
3,645 Views
28 Pages

Human Superantibodies to 3CLpro Inhibit Replication of SARS-CoV-2 across Variants

  • Kittirat Glab-ampai,
  • Kanasap Kaewchim,
  • Thanatsaran Saenlom,
  • Watayagorn Thepsawat,
  • Kodchakorn Mahasongkram,
  • Nitat Sookrung,
  • Wanpen Chaicumpa and
  • Monrat Chulanetra

Broadly effective and safe anti-coronavirus agent is existentially needed. Major protease (3CLpro) is a highly conserved enzyme of betacoronaviruses. The enzyme plays pivotal role in the virus replication cycle. Thus, it is a good target of a broadly...

  • Article
  • Open Access
23 Citations
5,909 Views
10 Pages

Sub-Micromolar Inhibition of SARS-CoV-2 3CLpro by Natural Compounds

  • Bruno Rizzuti,
  • Laura Ceballos-Laita,
  • David Ortega-Alarcon,
  • Ana Jimenez-Alesanco,
  • Sonia Vega,
  • Fedora Grande,
  • Filomena Conforti,
  • Olga Abian and
  • Adrian Velazquez-Campoy

1 September 2021

Inhibiting the main protease 3CLpro is the most common strategy in the search for antiviral drugs to fight the infection from SARS-CoV-2. We report that the natural compound eugenol is able to hamper in vitro the enzymatic activity of 3CLpro, the SAR...

  • Article
  • Open Access
42 Citations
6,842 Views
24 Pages

Natural Products-Based Drug Design against SARS-CoV-2 Mpro 3CLpro

  • Rai C. Silva,
  • Humberto F. Freitas,
  • Joaquín M. Campos,
  • Njogu M. Kimani,
  • Carlos H. T. P. Silva,
  • Rosivaldo S. Borges,
  • Samuel S. R. Pita and
  • Cleydson B. R. Santos

29 October 2021

Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has received global attention due to the serious threat it poses to public health. Since the outbreak in December 2019, millions of people ha...

  • Article
  • Open Access
45 Citations
8,646 Views
16 Pages

Development of a Cell-Based Luciferase Complementation Assay for Identification of SARS-CoV-2 3CLpro Inhibitors

  • Jonathan M. O. Rawson,
  • Alice Duchon,
  • Olga A. Nikolaitchik,
  • Vinay K. Pathak and
  • Wei-Shau Hu

24 January 2021

The 3C-like protease (3CLpro) of SARS-CoV-2 is considered an excellent target for COVID-19 antiviral drug development because it is essential for viral replication and has a cleavage specificity distinct from human proteases. However, drug developmen...

  • Article
  • Open Access
8 Citations
3,242 Views
11 Pages

3CLpro of SARS-CoV-2 is a promising target for developing anti-COVID19 agents. In order to evaluate the catalytic activity of 3CLpros according to the presence or absence of the dimerization domain, two forms had been purified and tested. Enzyme kine...

  • Article
  • Open Access
1 Citations
1,527 Views
16 Pages

Discovery of Small-Molecule Inhibitors Against Norovirus 3CLpro Using Structure-Based Virtual Screening and FlipGFP Assay

  • Hao Shen,
  • Shiqi Liu,
  • Limin Shang,
  • Yuchen Liu,
  • Yijin Sha,
  • Dingwei Lei,
  • Yuehui Zhang,
  • Chaozhi Jin,
  • Shanshan Wu and
  • Jian Wang
  • + 3 authors

4 June 2025

Norovirus, a major cause of acute gastroenteritis, possesses a single-stranded positive-sense RNA genome. The viral 3C-like cysteine protease (3CLpro) plays a critical role in processing the viral polyprotein into mature non-structural proteins, a st...

  • Article
  • Open Access
30 Citations
4,840 Views
13 Pages

All-Trans Retinoic Acid Exhibits Antiviral Effect against SARS-CoV-2 by Inhibiting 3CLpro Activity

  • Takeshi Morita,
  • Kei Miyakawa,
  • Sundararaj Stanleyraj Jeremiah,
  • Yutaro Yamaoka,
  • Mitsuru Sada,
  • Tomoko Kuniyoshi,
  • Jinwei Yang,
  • Hirokazu Kimura and
  • Akihide Ryo

23 August 2021

The pandemic of COVID-19 caused by SARS-CoV-2 continues to spread despite the global efforts taken to control it. The 3C-like protease (3CLpro), the major protease of SARS-CoV-2, is one of the most interesting targets for antiviral drug development b...

  • Article
  • Open Access
1,282 Views
16 Pages

Selective Degradation and Inhibition of SARS-CoV-2 3CLpro by MMP14 Reveals a Novel Strategy for COVID-19 Therapeutics

  • Hyun Lee,
  • Yunjeong Hwang,
  • Elizabeth J. Mulder,
  • Yuri Song,
  • Calista Choi,
  • Lijun Rong,
  • Dimitri T. Azar and
  • Kyu-Yeon Han

26 September 2025

Novel therapies to treat infection by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the cause of respiratory coronavirus disease 2019 (COVID-19), would be of great clinical value to combat the current and future pandemics. Two viral p...

  • Communication
  • Open Access
38 Citations
12,842 Views
12 Pages

Potential In Vitro Inhibition of Selected Plant Extracts against SARS-CoV-2 Chymotripsin-Like Protease (3CLPro) Activity

  • Carla Guijarro-Real,
  • Mariola Plazas,
  • Adrián Rodríguez-Burruezo,
  • Jaime Prohens and
  • Ana Fita

29 June 2021

Antiviral treatments inhibiting Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) replication may represent a strategy complementary to vaccination to fight the ongoing Coronavirus disease 19 (COVID-19) pandemic. Molecules or extracts inhi...

  • Article
  • Open Access
10 Citations
4,324 Views
12 Pages

21 February 2022

As the etiological agent for the coronavirus disease 2019, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) challenges the ongoing efforts of vaccine development and drug design. Due to the accumulating cases of breakthrough infections, t...

  • Article
  • Open Access
10 Citations
2,254 Views
26 Pages

10 February 2025

The main protease of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), known as 3CLpro, is crucial in the virus’s life cycle and plays a pivotal role in COVID-19. Understanding how small molecules inhibit 3CLpro’s activity...

  • Article
  • Open Access
1 Citations
1,520 Views
22 Pages

Discovery of Galloyl–Flavonoid Conjugates as SARS-CoV-2 3CLpro Inhibitors: Understanding Binding Interactions Through Computational Approaches

  • Nopawit Khamto,
  • Panida Boontawee,
  • Vachira Choommongkol,
  • Kritsada Pruksaphon,
  • Suwicha Patnin,
  • Nuttee Suree,
  • Panchika Prangkio and
  • Puttinan Meepowpan

7 October 2025

The emergence of SARS-CoV-2 in 2019 posed significant global public health challenges. One of the most promising targets for novel antiviral drug development is the SARS-CoV-2 main protease (3CLpro). In this study, fragment molecular orbital (FMO) ca...

  • Article
  • Open Access
29 Citations
7,994 Views
21 Pages

The Repurposed Drugs Suramin and Quinacrine Cooperatively Inhibit SARS-CoV-2 3CLpro In Vitro

  • Raphael J. Eberle,
  • Danilo S. Olivier,
  • Marcos S. Amaral,
  • Ian Gering,
  • Dieter Willbold,
  • Raghuvir K. Arni and
  • Monika A. Coronado

10 May 2021

Since the first report of a new pneumonia disease in December 2019 (Wuhan, China) the WHO reported more than 148 million confirmed cases and 3.1 million losses globally up to now. The causative agent of COVID-19 (SARS-CoV-2) has spread worldwide, res...

  • Article
  • Open Access
7 Citations
3,722 Views
23 Pages

Chetomin, a SARS-CoV-2 3C-like Protease (3CLpro) Inhibitor: In Silico Screening, Enzyme Docking, Molecular Dynamics and Pharmacokinetics Analysis

  • Mahmoud A. A. Ibrahim,
  • Alaa H. M. Abdelrahman,
  • Dina E. M. Mohamed,
  • Khlood A. A. Abdeljawaad,
  • Mohamed Ahmed Naeem,
  • Gamal A. Gabr,
  • Ahmed M. Shawky,
  • Mahmoud E. S. Soliman,
  • Peter A. Sidhom and
  • Mohamed-Elamir F. Hegazy
  • + 1 author

15 January 2023

The emergence of the Coronavirus Disease 2019 (COVID-19) pandemic caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has led to over 6 million deaths. The 3C-like protease (3CLpro) enzyme of the SARS-CoV-2 virus is an attractive d...

  • Article
  • Open Access
5 Citations
3,328 Views
12 Pages

A Study of Drug Repurposing to Identify SARS-CoV-2 Main Protease (3CLpro) Inhibitors

  • Seri Jo,
  • Luca Signorile,
  • Suwon Kim,
  • Mi-Sun Kim,
  • Oscar Huertas,
  • Raúl Insa,
  • Núria Reig and
  • Dong Hae Shin

The outbreak of coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) wreaked havoc all over the world. Although vaccines for the disease have recently become available and started to be administer...

  • Feature Paper
  • Article
  • Open Access
80 Citations
6,974 Views
20 Pages

Rutin Is a Low Micromolar Inhibitor of SARS-CoV-2 Main Protease 3CLpro: Implications for Drug Design of Quercetin Analogs

  • Bruno Rizzuti,
  • Fedora Grande,
  • Filomena Conforti,
  • Ana Jimenez-Alesanco,
  • Laura Ceballos-Laita,
  • David Ortega-Alarcon,
  • Sonia Vega,
  • Hugh T. Reyburn,
  • Olga Abian and
  • Adrian Velazquez-Campoy

The pandemic, due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has stimulated the search for antivirals to tackle COVID-19 infection. Molecules with known pharmacokinetics and already approved for human use have been demonstrated...

  • Article
  • Open Access
7 Citations
3,095 Views
32 Pages

Previous studies indicated that natural-based chalcones have significant inhibitory effects on the coronavirus enzymes 3CLpro and PLpro as well as modulation of some host-based antiviral targets (HBATs). In this study, a comprehensive computational a...

  • Article
  • Open Access
15 Citations
6,014 Views
22 Pages

A Bioluminescent 3CLPro Activity Assay to Monitor SARS-CoV-2 Replication and Identify Inhibitors

  • Cyrille Mathieu,
  • Franck Touret,
  • Clémence Jacquemin,
  • Yves L. Janin,
  • Antoine Nougairède,
  • Manon Brailly,
  • Magalie Mazelier,
  • Didier Décimo,
  • Virginie Vasseur and
  • Pierre-Olivier Vidalain
  • + 7 authors

12 September 2021

Our therapeutic arsenal against viruses is very limited and the current pandemic of SARS-CoV-2 highlights the critical need for effective antivirals against emerging coronaviruses. Cellular assays allowing a precise quantification of viral replicatio...

  • Article
  • Open Access
18 Citations
3,655 Views
18 Pages

Polyphenolic Compounds Isolated from Marine Algae Attenuate the Replication of SARS-CoV-2 in the Host Cell through a Multi-Target Approach of 3CLpro and PLpro

  • D. P. Nagahawatta,
  • N. M. Liyanage,
  • Jun-Geon Je,
  • H. H. A. C. K. Jayawardhana,
  • Thilina U. Jayawardena,
  • Seong-Hun Jeong,
  • Hyung-Jun Kwon,
  • Cheol Soo Choi and
  • You-Jin Jeon

19 December 2022

A global health concern has emerged as a response to the recent SARS-CoV-2 pandemic. The identification and inhibition of drug targets of SARS-CoV-2 is a decisive obligation of scientists. In addition to the cell entry mechanism, SARS-CoV-2 expresses...

  • Article
  • Open Access
6 Citations
2,712 Views
29 Pages

25 February 2024

We provide promising computational (in silico) data on phytochemicals (compounds 110) from Arabian Peninsula medicinal plants as strong binders, targeting 3-chymotrypsin-like protease (3CLPro) and papain-like proteases (PLPro) of SARS-CoV-2. C...

  • Data Descriptor
  • Open Access
1 Citations
2,574 Views
24 Pages

Technical Data of In Silico Analysis of the Interaction of Dietary Flavonoid Compounds against Spike-Glycoprotein and Proteases of SARS-CoV-2

  • Nurbella Sofiana Altu,
  • Cahyo Budiman,
  • Rafida Razali,
  • Ruzaidi Azli Mohd Mokhtar and
  • Khairul Azfar Kamaruzaman

27 October 2022

The spike glycoprotein (S protein), 3-chymotrypsin-like protease (3CL-Pro), and papain-like protease (PL-Pro) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus are widely targeted for the discovery of therapeutic compounds against...

  • Article
  • Open Access
3 Citations
3,229 Views
36 Pages

15 November 2023

Among the oldest marine species on the planet, the genus Salinispora is often encountered inhabiting sediments and other marine creatures in tropical and subtropical marine settings. This bacterial genus produces a plethora of natural products. The p...

  • Article
  • Open Access
6 Citations
2,470 Views
16 Pages

26 November 2022

It is well known that vital enzymes in the replication process of the coronavirus are the SARS-CoV-2 PLpro and SARS-CoV-2 3CLpro, both of which are important targets in the search for anti-coronavirus agents. These two enzymes are responsible for cle...

  • Article
  • Open Access
13 Citations
5,408 Views
16 Pages

Chloropyridinyl Esters of Nonsteroidal Anti-Inflammatory Agents and Related Derivatives as Potent SARS-CoV-2 3CL Protease Inhibitors

  • Arun K. Ghosh,
  • Dana Shahabi,
  • Monika Yadav,
  • Satish Kovela,
  • Brandon J. Anson,
  • Emma K. Lendy,
  • Connie Bonham,
  • Devika Sirohi,
  • Carlos A. Brito-Sierra and
  • Andrew D. Mesecar
  • + 3 authors

24 September 2021

We report the design and synthesis of a series of new 5-chloropyridinyl esters of salicylic acid, ibuprofen, indomethacin, and related aromatic carboxylic acids for evaluation against SARS-CoV-2 3CL protease enzyme. These ester derivatives were synth...

  • Article
  • Open Access
9 Citations
4,085 Views
20 Pages

Computer-Aided Screening for Potential Coronavirus 3-Chymotrypsin-like Protease (3CLpro) Inhibitory Peptides from Putative Hemp Seed Trypsinized Peptidome

  • Kansate Prasertsuk,
  • Kasidit Prongfa,
  • Piyapach Suttiwanich,
  • Nathaphat Harnkit,
  • Mattanun Sangkhawasi,
  • Pongsakorn Promta and
  • Pramote Chumnanpuen

21 December 2022

To control the COVID-19 pandemic, antivirals that specifically target the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are urgently required. The 3-chymotrypsin-like protease (3CLpro) is a promising drug target since it functions as a...

  • Article
  • Open Access
10 Citations
4,900 Views
24 Pages

Design, Synthesis and Evaluation of Fused Bicyclo[2.2.2]octene as a Potential Core Scaffold for the Non-Covalent Inhibitors of SARS-CoV-2 3CLpro Main Protease

  • Barbara Herlah,
  • Andrej Hoivik,
  • Luka Jamšek,
  • Katja Valjavec,
  • Norio Yamamoto,
  • Tyuji Hoshino,
  • Krištof Kranjc and
  • Andrej Perdih

27 April 2022

The emergence of SARS-CoV-2, responsible for the global COVID-19 pandemic, requires the rapid development of novel antiviral drugs that would contribute to an effective treatment alongside vaccines. Drug repurposing and development of new molecules t...

  • Article
  • Open Access
33 Citations
4,320 Views
11 Pages

9 December 2020

SARS-CoV-2, or severe acute respiratory syndrome coronavirus 2, represents a new strain of Coronaviridae. In the closing 2019 to early 2020 months, the virus caused a global pandemic of COVID-19 disease. We performed a virtual screening study in orde...

  • Article
  • Open Access
1 Citations
2,099 Views
21 Pages

Diverse Structures of Tea Polyphenols from Rougui Wuyi Rock Tea and Their Potential as Inhibitor of 3C-like Protease

  • Qing Sun,
  • Xiaojuan Chen,
  • Jie Zhang,
  • Juan Song,
  • Lan Yao,
  • Yang Zhao,
  • Guang Yang,
  • Xiu Wang,
  • Haizhen Liang and
  • Baiping Ma

23 February 2025

Tea polyphenols, the primary bioactive constituents responsible for the various health benefits of tea, can be categorized into different subgroups according to their structural characteristics. However, the distinctions in antiviral activity among t...

  • Article
  • Open Access
18 Citations
4,708 Views
24 Pages

Combining Different Docking Engines and Consensus Strategies to Design and Validate Optimized Virtual Screening Protocols for the SARS-CoV-2 3CL Protease

  • Candida Manelfi,
  • Jonas Gossen,
  • Silvia Gervasoni,
  • Carmine Talarico,
  • Simone Albani,
  • Benjamin Joseph Philipp,
  • Francesco Musiani,
  • Giulio Vistoli,
  • Giulia Rossetti and
  • Alessandro Pedretti
  • + 1 author

4 February 2021

The 3CL-Protease appears to be a very promising medicinal target to develop anti-SARS-CoV-2 agents. The availability of resolved structures allows structure-based computational approaches to be carried out even though the lack of known inhibitors pre...

  • Article
  • Open Access
5 Citations
3,525 Views
16 Pages

30 November 2021

An in-depth analysis of first-wave SARS-CoV-2 genome is required to identify various mutations that significantly affect viral fitness. In the present study, we performed a comprehensive in silico mutational analysis of 3C-like protease (3CLpro), RNA...

  • Article
  • Open Access
3 Citations
2,421 Views
16 Pages

3 April 2023

Tyrosine-containing pharmaceuticals’ (TPh) potential to inhibit SARS CoV-2 3-chymotrypsin-like proteases (3CLpro) and nonstructural protein 16 (NSP16) has been explored using docking studies, molecular dynamics simulations, and density function...

  • Article
  • Open Access
39 Citations
7,306 Views
11 Pages

13 October 2020

The global SARS-CoV-2 pandemic started late 2019 and currently continues unabated. The lag-time for developing vaccines means it is of paramount importance to be able to quickly develop and repurpose therapeutic drugs. Protein-based biosensors allow...

  • Article
  • Open Access
32 Citations
10,943 Views
24 Pages

Molecular Interactions of Tannic Acid with Proteins Associated with SARS-CoV-2 Infectivity

  • Mohamed Haddad,
  • Roger Gaudreault,
  • Gabriel Sasseville,
  • Phuong Trang Nguyen,
  • Hannah Wiebe,
  • Theo Van De Ven,
  • Steve Bourgault,
  • Normand Mousseau and
  • Charles Ramassamy

27 February 2022

The overall impact of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on our society is unprecedented. The identification of small natural ligands that could prevent the entry and/or replication of the coronavirus remains a pertinent app...

  • Article
  • Open Access
91 Citations
6,289 Views
21 Pages

Tomatidine and Patchouli Alcohol as Inhibitors of SARS-CoV-2 Enzymes (3CLpro, PLpro and NSP15) by Molecular Docking and Molecular Dynamics Simulations

  • Rafat Zrieq,
  • Iqrar Ahmad,
  • Mejdi Snoussi,
  • Emira Noumi,
  • Marcello Iriti,
  • Fahad D. Algahtani,
  • Harun Patel,
  • Mohd Saeed,
  • Munazzah Tasleem and
  • Adel Kadri
  • + 2 authors

2 October 2021

Considering the current dramatic and fatal situation due to the high spreading of SARS-CoV-2 infection, there is an urgent unmet medical need to identify novel and effective approaches for prevention and treatment of Coronavirus disease (COVID 19) by...

  • Article
  • Open Access
1 Citations
1,477 Views
29 Pages

Computational Evaluation and Multi-Criteria Optimization of Natural Compound Analogs Targeting SARS-CoV-2 Proteases

  • Paul Andrei Negru,
  • Andrei-Flavius Radu,
  • Ada Radu,
  • Delia Mirela Tit and
  • Gabriela Bungau

The global impact of the COVID-19 crisis has underscored the need for novel therapeutic candidates capable of efficiently targeting essential viral proteins. Existing therapeutic strategies continue to encounter limitations such as reduced efficacy a...

  • Article
  • Open Access
932 Views
39 Pages

1,2,4-Thiadiazolidin-3,5-Diones as Inhibitors of Cysteine Proteases

  • Maria Aparecida Juliano,
  • Marco Persico,
  • Beatrice Severino,
  • Giuseppe Tumbarello,
  • Debora Okamoto,
  • Karolina Rosa Fernandes,
  • Gabriel Trigo,
  • Aparecida Sadae Tanaka,
  • José Thalles Lacerda and
  • Caterina Fattorusso
  • + 9 authors

26 September 2025

A focused library of 1,2,4-thiadiazolidin-3,5-diones (THIA-110), previously characterized as hydrogen sulfide (H2S) donors, was evaluated for inhibitory activity against cysteine proteases. We included two key cysteine proteases aiming at anti...

  • Article
  • Open Access
4 Citations
2,636 Views
21 Pages

Characterization of SARS-CoV-2 Variants in Military and Civilian Personnel of an Air Force Airport during Three Pandemic Waves in Italy

  • Michele Equestre,
  • Cinzia Marcantonio,
  • Nadia Marascio,
  • Federica Centofanti,
  • Antonio Martina,
  • Matteo Simeoni,
  • Elisabetta Suffredini,
  • Giuseppina La Rosa,
  • Giusy Bonanno Ferraro and
  • Roberto Bruni
  • + 13 authors

We investigated SARS-CoV-2 variants circulating, from November 2020 to March 2022, among military and civilian personnel at an Air Force airport in Italy in order to classify viral isolates in a potential hotspot for virus spread. Positive samples we...

  • Article
  • Open Access
60 Citations
10,342 Views
19 Pages

15 December 2015

Human coronaviruses represent a significant disease burden; however, there is currently no antiviral strategy to combat infection. The outbreak of severe acute respiratory syndrome (SARS) in 2003 and Middle East respiratory syndrome (MERS) less than...

  • Article
  • Open Access
2,773 Views
13 Pages

Development of Mouse Hepatitis Virus Chimeric Reporter Viruses Expressing the 3CLpro Proteases of Human Coronaviruses HKU1 and OC43 Reveals Susceptibility to Inactivation by Natural Inhibitors Baicalin and Baicalein

  • Elise R. Huffman,
  • Jared X. Franges,
  • Jayden M. Doster,
  • Alexis R. Armstrong,
  • Yara S. Batista,
  • Cameron M. Harrison,
  • Jon D. Brooks,
  • Morgan N. Thomas,
  • Butler Student Virology Group and
  • Dia C. Beachboard
  • + 2 authors

9 February 2024

The recent emergence of SARS-CoV-2 in 2019 has highlighted the necessity of antiviral therapeutics for current and future emerging coronaviruses. Recently, the traditional herbal medicines baicalein, baicalin, and andrographolide have shown inhibitio...

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