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53 Results Found

  • Article
  • Open Access
39 Citations
6,898 Views
17 Pages

17 May 2018

Benthic habitat monitoring is essential for many applications involving biodiversity, marine resource management, and the estimation of variations over temporal and spatial scales. Nevertheless, both automatic and semi-automatic analytical methods fo...

  • Communication
  • Open Access
13 Citations
3,489 Views
8 Pages

Underwater Photogrammetry Captures the Initial Recovery of a Coral Reef at Lalo Atoll

  • Atsuko Fukunaga,
  • Kailey H. Pascoe,
  • Ashley R. Pugh,
  • Randall K. Kosaki and
  • John H. R. Burns

8 January 2022

Recovery of coral reefs after physical damage sustained from storm events can be affected by various factors. Here, we examined the initial recovery of a coral reef at the southern end of uninhabited Lalo Atoll of Papahānaumokuākea Marine N...

  • Letter
  • Open Access
33 Citations
5,517 Views
16 Pages

21 March 2020

Quantifying the three-dimensional (3D) habitat structure of coral reefs is an important aspect of coral reef monitoring, as habitat architecture affects the abundance and diversity of reef organisms. Here, we used photogrammetric techniques to genera...

  • Article
  • Open Access
24 Citations
4,047 Views
19 Pages

15 November 2020

The architectural complexity of coral-reef habitat plays an important role in determining the assemblage structure of reef fish. We investigated associations between the reef habitats and fish assemblages in the Northwestern Hawaiian Islands (NWHI) u...

  • Article
  • Open Access
5 Citations
3,694 Views
19 Pages

19 December 2018

Coral reefs are biologically diverse and economically important ecosystems that are on the decline worldwide in response to direct human impacts and climate change. Ocean color remote sensing has proven to be an important tool in coral reef research...

  • Article
  • Open Access
3 Citations
2,914 Views
26 Pages

Remote Sensing Reveals Multidecadal Trends in Coral Cover at Heron Reef, Australia

  • David E. Carrasco Rivera,
  • Faye F. Diederiks,
  • Nicholas M. Hammerman,
  • Timothy Staples,
  • Eva Kovacs,
  • Kathryn Markey and
  • Chris M. Roelfsema

3 April 2025

Coral reefs are experiencing increasing disturbance regimes. The influence these disturbances have on coral reef health is traditionally captured through field-based monitoring, representing a very small reef area (<1%). Satellite-based observatio...

  • Article
  • Open Access
1,965 Views
15 Pages

Colonial Ascidian Populations at Inshore Coral Reefs of Norfolk Island, South Pacific

  • Shannon Eckhardt,
  • Tracy D. Ainsworth,
  • William Leggat and
  • Charlotte E. Page

30 June 2024

Subtropical coral reefs such as the lagoonal reefs of Norfolk Island in the remote South Pacific are vastly understudied, with many benthic species unrecorded in the scientific literature. Here we report on ascidian populations from 2021 to 2023 at N...

  • Article
  • Open Access
28 Citations
6,239 Views
20 Pages

The Sensitivity of Multi-spectral Satellite Sensors to Benthic Habitat Change

  • Jiwei Li,
  • Nicholas S. Fabina,
  • David E. Knapp and
  • Gregory P. Asner

6 February 2020

Coral reef ecosystems are under stress due to human-driven climate change and coastal activities. Satellite-based monitoring approaches offer an alternative to traditional field sampling measurements for detecting coral reef composition changes, espe...

  • Article
  • Open Access
11 Citations
3,179 Views
13 Pages

Detecting Long Time Changes in Benthic Macroalgal Cover Using Landsat Image Archive

  • Laura Lõugas,
  • Tiit Kutser,
  • Jonne Kotta and
  • Ele Vahtmäe

11 June 2020

Coastal macroalgae worldwide provide multiple ecological functions and support vital ecosystem services. Thereby, it is important to monitor changes in the extent of benthic macroalgal cover. However, as in situ sampling is costly and time-consuming,...

  • Article
  • Open Access
17 Citations
8,238 Views
17 Pages

Optimising Sampling Strategies in Coral Reefs Using Large-Area Mosaics

  • Marine Anna Alice Lechene,
  • Anna Julia Haberstroh,
  • Maria Byrne,
  • Will Figueira and
  • Renata Ferrari

5 December 2019

Adequately sampling benthic cover in marine ecosystems is a challenge with most methods encompassing only a small portion of the area for which cover is estimated. Recent advances in photogrammetric techniques are providing opportunity to map expansi...

  • Article
  • Open Access
22 Citations
5,759 Views
22 Pages

Asynchrony of Gambierdiscus spp. Abundance and Toxicity in the U.S. Virgin Islands: Implications for Monitoring and Management of Ciguatera

  • Justin D. Liefer,
  • Mindy L. Richlen,
  • Tyler B. Smith,
  • Jennifer L. DeBose,
  • Yixiao Xu,
  • Donald M. Anderson and
  • Alison Robertson

10 June 2021

Ciguatera poisoning (CP) poses a significant threat to ecosystem services and fishery resources in coastal communities. The CP-causative ciguatoxins (CTXs) are produced by benthic dinoflagellates including Gambierdiscus and Fukuyoa spp., and enter re...

  • Article
  • Open Access
169 Citations
15,788 Views
23 Pages

6 January 2011

Shallow coastal ecosystems are the interface between the terrestrial and marine environment. The physical and biological composition and distribution of benthic habitats within these ecosystems determines their contribution to ecosystem services and...

  • Article
  • Open Access
2 Citations
3,482 Views
23 Pages

Mapping Coastal Marine Habitats Using UAV and Multispectral Satellite Imagery in the NEOM Region, Northern Red Sea

  • Emma Sullivan,
  • Nikolaos Papagiannopoulos,
  • Daniel Clewley,
  • Steve Groom,
  • Dionysios E. Raitsos and
  • Ibrahim Hoteit

30 January 2025

Effective management to conserve marine environments requires up-to-date information on the location, distribution, and extent of major benthic habitats. Remote sensing is a key tool for such assessments, enabling consistent, repeated measurements ov...

  • Review
  • Open Access
35 Citations
8,337 Views
34 Pages

Machine-Learning for Mapping and Monitoring Shallow Coral Reef Habitats

  • Christopher Burns,
  • Barbara Bollard and
  • Ajit Narayanan

2 June 2022

Mapping and monitoring coral reef benthic composition using remotely sensed imagery provides a large-scale inference of spatial and temporal dynamics. These maps have become essential components in marine science and management, with their utility be...

  • Article
  • Open Access
3 Citations
4,555 Views
14 Pages

11 February 2021

Coastal habitats form a critical source of livelihood for a large number of inhabitants in Fiji. The absence of historical and baseline information creates a significant challenge in effectively designing suitable management plans. This study aimed a...

  • Article
  • Open Access
394 Views
20 Pages

Semantic Segmentation of Coral Reefs Using Convolutional Neural Networks: A Case Study in Kiritimati, Kiribati

  • Dominica E. Harrison,
  • Gregory P. Asner,
  • Nicholas R. Vaughn,
  • Calder E. Guimond and
  • Julia K. Baum

24 October 2025

Habitat complexity plays a critical role in coral reef ecosystems by enhancing habitat availability, increasing ecological resilience, and offering coastal protection. Structure-from-motion (SfM) photogrammetry has become a standard approach for quan...

  • Article
  • Open Access
1 Citations
905 Views
17 Pages

11 July 2025

Mediterranean subtidal reefs host ecologically significant habitats, including forests of Cystoseira spp., which form complex benthic communities within the photic zone. These habitats are increasingly degraded due to climate change, invasive species...

  • Article
  • Open Access
34 Citations
7,193 Views
24 Pages

13 October 2020

Imagery from unoccupied aerial vehicles (UAVs) is useful for mapping floating and emerged primary producers, as well as single taxa of submerged primary producers in shallow, clear lakes and streams. However, there is little research on the effective...

  • Technical Note
  • Open Access
7 Citations
3,204 Views
15 Pages

Structural Complexity of Coral Reefs in Guam, Mariana Islands

  • Matthew S. Mills,
  • Tom Schils,
  • Andrew D. Olds and
  • Javier X. Leon

29 November 2023

The complexity of tropical reef habitats affects the occurrence and diversity of the organisms residing in these ecosystems. Quantifying this complexity is important to better understand and monitor reef community assemblages and their roles in provi...

  • Article
  • Open Access
24 Citations
6,747 Views
15 Pages

How Much Shallow Coral Habitat Is There on the Great Barrier Reef?

  • Chris M. Roelfsema,
  • Mitchell B. Lyons,
  • Carolina Castro-Sanguino,
  • Eva M. Kovacs,
  • David Callaghan,
  • Magnus Wettle,
  • Kathryn Markey,
  • Rodney Borrego-Acevedo,
  • Paul Tudman and
  • Meredith Roe
  • + 4 authors

28 October 2021

Australia’s Great Barrier Reef (GBR) is a globally unique and precious national resource; however, the geomorphic and benthic composition and the extent of coral habitat per reef are greatly understudied. However, this is critical to understand the s...

  • Article
  • Open Access
5 Citations
2,849 Views
12 Pages

Benthic Colonization on New Materials for Marine Ecosystem Restoration in Porto Cesareo, Italy

  • Carolina Bracho-Villavicencio,
  • Helena Matthews-Cascon,
  • Marc García-Durán,
  • Xavier Vélez,
  • Nicola Lago,
  • Laura Busquier and
  • Sergio Rossi

Suitable colonization materials are a pursued target in marine restoration programs. Known for making nutrients available while reducing pollutants and the risk of pathogens in terrestrial ecosystems, Biochar and Bioferment materials of organic origi...

  • Article
  • Open Access
11 Citations
4,243 Views
16 Pages

Comparative Study of Marine Cave Communities in a Protected Area of the South-Eastern Aegean Sea, Greece

  • Markos Digenis,
  • Christos Arvanitidis,
  • Thanos Dailianis and
  • Vasilis Gerovasileiou

Although more than 600 marine caves have been recorded so far along the Greek coasts of the Aegean Sea (Eastern Mediterranean), only a few have been systematically studied for their biodiversity. In this study, the benthic communities of six marine c...

  • Article
  • Open Access
3 Citations
2,586 Views
18 Pages

Benthic Diatom Blooms of Blue Haslea spp. in the Mediterranean Sea

  • Julie Seveno,
  • Ana Car,
  • Damien Sirjacobs,
  • Lovina Fullgrabe,
  • Iris Dupčić Radić,
  • Pierre Lejeune,
  • Vincent Leignel and
  • Jean-Luc Mouget

8 November 2023

Blue Haslea species are marine benthic pennate diatoms able to synthesize a blue-green water-soluble pigment, like marennine produced by H. ostrearia Simonsen. New species of Haslea synthetizing blue pigments were recently described (H. karadagensis,...

  • Article
  • Open Access
1,573 Views
16 Pages

Towed Video-Diver: A Useful Low-Cost Tool for Rapid Benthic Mapping and Biodiversity Monitoring

  • Gonzalo Bravo,
  • Gaston A. Trobbiani,
  • Gregorio Bigatti,
  • Lucas E. Beltramino and
  • Alejo J. Irigoyen

2 February 2025

Marine Protected Areas (MPAs) require efficient monitoring tools to assess habitats and biodiversity, particularly in remote or understudied regions. This study demonstrates the utility of the towed video-diver technique combined with high-resolution...

  • Article
  • Open Access
15 Citations
6,233 Views
20 Pages

We examine decision-making, shared authority, and pluralism as key characteristics for the effective co-management of natural resources. Drawing on the concept of network governance, we complement this approach by studying localized practices of gove...

  • Article
  • Open Access
10 Citations
3,558 Views
25 Pages

A New Coastal Crawler Prototype to Expand the Ecological Monitoring Radius of OBSEA Cabled Observatory

  • Ahmad Falahzadeh,
  • Daniel Mihai Toma,
  • Marco Francescangeli,
  • Damianos Chatzievangelou,
  • Marc Nogueras,
  • Enoc Martínez,
  • Matias Carandell,
  • Michael Tangerlini,
  • Laurenz Thomsen and
  • Giacomo Picardi
  • + 4 authors

The use of marine cabled video observatories with multiparametric environmental data collection capability is becoming relevant for ecological monitoring strategies. Their ecosystem surveying can be enforced in real time, remotely, and continuously,...

  • Editorial
  • Open Access
19 Citations
4,157 Views
5 Pages

5 June 2020

Freshwater ecosystems have been severely damaged worldwide by a multitude of human pressures, such as pollution, nutrient enrichment, damming or overexploitation, and this has been more intense over the past five decades. It is therefore important th...

  • Article
  • Open Access
20 Citations
5,875 Views
16 Pages

Application of Sentinel-2 Multispectral Data for Habitat Mapping of Pacific Islands: Palau Republic (Micronesia, Pacific Ocean)

  • Francesco Immordino,
  • Mattia Barsanti,
  • Elena Candigliota,
  • Silvia Cocito,
  • Ivana Delbono and
  • Andrea Peirano

12 September 2019

Sustainable and ecosystem-based marine spatial planning is a priority of Pacific Island countries basing their economy on marine resources. The urgency of management coral reef systems and associated coastal environments, threatened by the effects of...

  • Article
  • Open Access
4 Citations
3,158 Views
24 Pages

29 April 2023

In 2020 marine heatwaves elicited severe bleaching on many of Earth’s coral reefs. We compared coral reef benthic community composition before (April 2020), during (September 2020), and after (December 2020–September 2021) this event at f...

  • Article
  • Open Access
30 Citations
14,888 Views
18 Pages

12 November 2012

This study compiled a wide range of modern and historic geospatial datasets to examine ecological and geomorphic change at Diego Garcia Atoll across a 38-year period (1967–2005). This remarkable collection of spatially referenced information offered...

  • Communication
  • Open Access
11 Citations
5,023 Views
9 Pages

Cloud Processing for Simultaneous Mapping of Seagrass Meadows in Optically Complex and Varied Water

  • Eva M. Kovacs,
  • Chris Roelfsema,
  • James Udy,
  • Simon Baltais,
  • Mitchell Lyons and
  • Stuart Phinn

27 January 2022

Improved development of remote sensing approaches to deliver timely and accurate measurements for environmental monitoring, particularly with respect to marine and estuarine environments is a priority. We describe a machine learning, cloud processing...

  • Article
  • Open Access
34 Citations
6,507 Views
24 Pages

Relationships between Riparian Forest Fragmentation and Biological Indicators of Streams

  • Yirigui Yirigui,
  • Sang-Woo Lee,
  • A. Pouyan Nejadhashemi,
  • Matthew R. Herman and
  • Jong-Won Lee

20 May 2019

Anthropogenic activities, such as land use and land cover modifications in riparian areas, can alter the degree of fragmentation of riparian vegetation, lead to the degradation of stream habitats, and affect biological communities in the streams. The...

  • Article
  • Open Access
6 Citations
4,134 Views
19 Pages

10 April 2022

The Ningaloo Reef, Australia’s longest fringing reef, is uniquely positioned in the NW region of the continent, with clear, oligotrophic waters, relatively low human impacts, and a high level of protection through the World Heritage Site and it...

  • Review
  • Open Access
347 Citations
58,364 Views
40 Pages

Remote Sensing of Coral Reefs for Monitoring and Management: A Review

  • John D. Hedley,
  • Chris M. Roelfsema,
  • Iliana Chollett,
  • Alastair R. Harborne,
  • Scott F. Heron,
  • Scarla Weeks,
  • William J. Skirving,
  • Alan E. Strong,
  • C. Mark Eakin and
  • Tyler R. L. Christensen
  • + 3 authors

6 February 2016

Coral reefs are in decline worldwide and monitoring activities are important for assessing the impact of disturbance on reefs and tracking subsequent recovery or decline. Monitoring by field surveys provides accurate data but at highly localised scal...

  • Article
  • Open Access
10 Citations
2,955 Views
12 Pages

The Lush Fucales Underwater Forests off the Cilento Coast: An Overlooked Mediterranean Biodiversity Hotspot

  • Francesco Rendina,
  • Annalisa Falace,
  • Giuseppina Alongi,
  • Maria Cristina Buia,
  • João Neiva,
  • Luca Appolloni,
  • Giuliana Marletta and
  • Giovanni Fulvio Russo

29 March 2023

Fucales (Phaeophyceae) are ecosystem engineers and forest-forming macroalgae whose populations are declining dramatically. In the Mediterranean Sea, Cystoseira sensu lato (s.l.)—encompassing the genera Cystoseira sensu stricto, Ericaria, and Go...

  • Article
  • Open Access
19 Citations
4,399 Views
27 Pages

Combining Multispectral and Radar Imagery with Machine Learning Techniques to Map Intertidal Habitats for Migratory Shorebirds

  • Mohamed Henriques,
  • Teresa Catry,
  • João Ricardo Belo,
  • Theunis Piersma,
  • Samuel Pontes and
  • José Pedro Granadeiro

6 July 2022

Migratory shorebirds are notable consumers of benthic invertebrates on intertidal sediments. The distribution and abundance of shorebirds will strongly depend on their prey and on landscape and sediment features such as mud and surface water content,...

  • Article
  • Open Access
8 Citations
2,575 Views
21 Pages

Describing Polyps Behavior of a Deep-Sea Gorgonian, Placogorgia sp., Using a Deep-Learning Approach

  • Elena Prado,
  • Alberto Abad-Uribarren,
  • Rubén Ramo,
  • Sergio Sierra,
  • César González-Pola,
  • Javier Cristobo,
  • Pilar Ríos,
  • Rocío Graña,
  • Eneko Aierbe and
  • Juan Manuel Rodríguez
  • + 4 authors

26 May 2023

Gorgonians play a fundamental role in the deep sea (below 200 m depth), composing three-dimensional habitats that are characterized by a high associated biodiversity and playing an important part in biogeochemical cycles. Here we describe the use of...

  • Article
  • Open Access
34 Citations
11,733 Views
31 Pages

16 May 2011

Eelgrass (Zostera marina) is a keystone component of inter- and sub-tidal ecosystems. However, anthropogenic pressures have caused its populations to decline worldwide. Delineation and continuous monitoring of eelgrass distribution is an integral par...

  • Article
  • Open Access
7 Citations
5,111 Views
18 Pages

Marine Energy Environmental Permitting and Compliance Costs

  • William J. Peplinski,
  • Jesse Roberts,
  • Geoff Klise,
  • Sharon Kramer,
  • Zach Barr,
  • Anna West and
  • Craig Jones

4 August 2021

Costs to permit Marine Energy projects are poorly understood. In this paper we examine environmental compliance and permitting costs for 19 projects in the U.S., covering the last 2 decades. Guided discussions were conducted with developers over a 3-...

  • Review
  • Open Access
26 Citations
12,387 Views
21 Pages

Mangrove cover is increasing in estuaries and harbours in many areas on North Island, New Zealand. The expansion of mangroves has been attributed to anthropogenic land-use change, including urbanisation and conversion of land to agriculture. Rapid ex...

  • Article
  • Open Access
3 Citations
2,190 Views
24 Pages

Discriminating Seagrasses from Green Macroalgae in European Intertidal Areas Using High-Resolution Multispectral Drone Imagery

  • Simon Oiry,
  • Bede Ffinian Rowe Davies,
  • Ana I. Sousa,
  • Philippe Rosa,
  • Maria Laura Zoffoli,
  • Guillaume Brunier,
  • Pierre Gernez and
  • Laurent Barillé

23 November 2024

Coastal areas support seagrass meadows, which offer crucial ecosystem services, including erosion control and carbon sequestration. However, these areas are increasingly impacted by human activities, leading to habitat fragmentation and seagrass decl...

  • Article
  • Open Access
19 Citations
8,225 Views
20 Pages

Biodiversity of Kelp Forests and Coralline Algae Habitats in Southwestern Greenland

  • Kathryn M. Schoenrock,
  • Johanne Vad,
  • Arley Muth,
  • Danni M. Pearce,
  • Brice R. Rea,
  • J. Edward Schofield and
  • Nicholas A. Kamenos

25 October 2018

All marine communities in Greenland are experiencing rapid environmental change, and to understand the effects on those structured by seaweeds, baseline records are vital. The kelp and coralline algae habitats along Greenland’s coastlines are r...

  • Feature Paper
  • Article
  • Open Access
53 Citations
10,535 Views
27 Pages

Coral Reef Community Changes in Karimunjawa National Park, Indonesia: Assessing the Efficacy of Management in the Face of Local and Global Stressors

  • Emma V Kennedy,
  • Julie Vercelloni,
  • Benjamin P Neal,
  • Ambariyanto,
  • Dominic E.P. Bryant,
  • Anjani Ganase,
  • Patrick Gartrell,
  • Kristen Brown,
  • Catherine J.S. Kim and
  • Mu’alimah Hudatwi
  • + 11 authors

28 September 2020

Karimunjawa National Park is one of Indonesia’s oldest established marine parks. Coral reefs across the park are being impacted by fishing, tourism and declining water quality (local stressors), as well as climate change (global pressures). In...

  • Article
  • Open Access
1 Citations
1,330 Views
21 Pages

23 May 2025

Corals in the Galápagos present diverse reef configurations from biogenic coral reefs to coral communities growing on rocks and sand. These corals have experienced decades of disturbances including recurring El Niño and mass bleaching e...

  • Article
  • Open Access
861 Views
28 Pages

28 January 2025

Bathymetric data are crucial for benthic monitoring in coastal areas but are traditionally obtained through costly and geographically limited acoustic methods. This study uses satellite-derived bathymetry (SDB) in the Eastern Mediterranean, focusing...

  • Article
  • Open Access
20 Citations
4,099 Views
13 Pages

4 January 2020

In the Mediterranean Sea, crustose coralline algae form endemic algal reefs known as Coralligenous (C) build-ups. The high degree of complexity that C can reach through time creates notable environmental heterogeneity making C a major hotspot of biod...

  • Article
  • Open Access
2 Citations
3,992 Views
21 Pages

Use of Machine Learning and Indexing Techniques for Identifying Industrial Pollutant Sources: A Case Study of the Lower Kelani River Basin, Sri Lanka

  • Nalintha Wijayaweera,
  • Luminda Gunawardhana,
  • Janaka Bamunawala,
  • Jeewanthi Sirisena,
  • Lalith Rajapakse,
  • Chaminda Samarasuriya Patabendige and
  • Himali Karunaweera

28 September 2024

With the recent acceleration in urbanisation and industrialisation, industrial pollution has severely impacted inland water bodies and ecosystem services globally, causing significant restrains to freshwater availability and myriad damages to benthic...

  • Article
  • Open Access
12 Citations
5,911 Views
18 Pages

The Influence of Riparian Corridor Land Use on the Pesquería River’s Macroinvertebrate Community (N.E. Mexico)

  • Daniel Castro-López,
  • Pablo Rodríguez-Lozano,
  • Rebeca Arias-Real,
  • Víctor Guerra-Cobián and
  • Narcís Prat

16 September 2019

The Earth’s freshwater ecosystems are currently under threat, particularly in developing countries. In Mexico, intensive land use and inadequate monitoring policies have resulted in the severe degradation of the country’s freshwater ecosy...

  • Article
  • Open Access
2 Citations
3,706 Views
28 Pages

Antarctic Seabed Assemblages in an Ice-Shelf-Adjacent Polynya, Western Weddell Sea

  • Bétina A. V. Frinault,
  • Frazer D. W. Christie,
  • Sarah E. Fawcett,
  • Raquel F. Flynn,
  • Katherine A. Hutchinson,
  • Chloë M. J. Montes Strevens,
  • Michelle L. Taylor,
  • Lucy C. Woodall and
  • David K. A. Barnes

25 November 2022

Ice shelves cover ~1.6 million km2 of the Antarctic continental shelf and are sensitive indicators of climate change. With ice-shelf retreat, aphotic marine environments transform into new open-water spaces of photo-induced primary production and ass...

  • Article
  • Open Access
1 Citations
3,581 Views
20 Pages

20 January 2021

Overall health of a stream is one of the powerful indicators for planning mitigation strategies. Currently, available methods to estimate stream health do not look at all the different components of stream health. Based on the statistical parameters...

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