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582 Results Found

  • Article
  • Open Access
3 Citations
3,818 Views
14 Pages

X-ray Crystallographic Structure of α-Helical Peptide Stabilized by Hydrocarbon Stapling at i,i + 1 Positions

  • Yui Makura,
  • Atsushi Ueda,
  • Takuma Kato,
  • Akihiro Iyoshi,
  • Mei Higuchi,
  • Mitsunobu Doi and
  • Masakazu Tanaka

Hydrocarbon stapling is a useful tool for stabilizing the secondary structure of peptides. Among several methods, hydrocarbon stapling at i,i + 1 positions was not extensively studied, and their secondary structures are not clarified. In this study,...

  • Review
  • Open Access
17 Citations
8,103 Views
15 Pages

13 February 2020

Complexes between proteins are at the basis of almost every process in cells. Their study, from a structural perspective, has a pivotal role in understanding biological functions and, importantly, in drug development. X-ray crystallography represents...

  • Article
  • Open Access
13 Citations
4,578 Views
13 Pages

High Consistency of Structure-Based Design and X-Ray Crystallography: Design, Synthesis, Kinetic Evaluation and Crystallographic Binding Mode Determination of Biphenyl-N-acyl-β-d-Glucopyranosylamines as Glycogen Phosphorylase Inhibitors

  • Thomas Fischer,
  • Symeon M. Koulas,
  • Anastasia S. Tsagkarakou,
  • Efthimios Kyriakis,
  • George A. Stravodimos,
  • Vassiliki T. Skamnaki,
  • Panagiota G.V. Liggri,
  • Spyros E. Zographos,
  • Rainer Riedl and
  • Demetres D. Leonidas

Structure-based design and synthesis of two biphenyl-N-acyl-β-d-glucopyranosylamine derivatives as well as their assessment as inhibitors of human liver glycogen phosphorylase (hlGPa, a pharmaceutical target for type 2 diabetes) is presented. X-...

  • Communication
  • Open Access
2 Citations
3,598 Views
6 Pages

Secondary Structure and X-ray Crystallographic Analysis of the Glideosome-Associated Connector (GAC) from Toxoplasma gondii

  • Amit Kumar,
  • Xu Zhang,
  • Oscar Vadas,
  • Fisentzos A. Stylianou,
  • Nicolas Dos Santos Pacheco,
  • Sarah L. Rouse,
  • Marc L. Morgan,
  • Dominique Soldati-Favre and
  • Steve Matthews

15 January 2022

A model for parasitic motility has been proposed in which parasite filamentous actin (F-actin) is attached to surface adhesins by a large component of the glideosome, known as the glideosome-associated connector protein (GAC). This large 286 kDa prot...

  • Communication
  • Open Access
4 Citations
3,452 Views
8 Pages

11 July 2018

The gene encoding frog (Xenopus tropicalis) ependymin without the signaling sequence was gene-synthesized, and the protein successfully over-expressed in ~mg quantities adequate for crystallization using insect cell expression. Circular dichroism (CD...

  • Article
  • Open Access
1 Citations
3,067 Views
14 Pages

Structural Studies of Pif1 Helicases from Thermophilic Bacteria

  • Stéphane Réty,
  • Yingzi Zhang,
  • Wentong Fu,
  • Shan Wang,
  • Wei-Fei Chen and
  • Xu-Guang Xi

Pif1 proteins are DNA helicases belonging to Superfamily 1, with 5′ to 3′ directionality. They are conserved from bacteria to human and have been shown to be particularly important in eukaryotes for replication and nuclear and mitochondri...

  • Review
  • Open Access
9 Citations
6,746 Views
29 Pages

23 February 2024

The molecule glycerol (H3gly) plays a key role in sustainable and green chemistry. Having been discovered for over 200 years and produced from vegetable oils and animal fats by hydrolysis, saponification and transesterification reactions, this natura...

  • Review
  • Open Access
4 Citations
5,624 Views
23 Pages

Chronic myeloid leukemia is a multistep, multi-lineage myeloproliferative disease that originates from a translocation event between chromosome 9 and chromosome 22 within the hematopoietic stem cell compartment. The resultant fusion protein BCR::ABL1...

  • Short Note
  • Open Access
1 Citations
627 Views
6 Pages

Methyl α-d-Tagatopyranoside

  • Yiming Hu,
  • Akihiro Iyoshi,
  • Masakazu Tanaka and
  • Atsushi Ueda

14 August 2025

d-Tagatose, classified as a rare sugar, exhibits notable biological activities, including its function as a low-calorie sweetener. The three-dimensional configuration of carbohydrates is crucial for elucidating their functional properties. Numerous s...

  • Short Note
  • Open Access
2 Citations
3,927 Views
7 Pages

2 April 2020

The title compound was obtained in low yield and spectroscopically characterised. Its X-ray structure was compared with the X-ray structures of other crystallographically-characterised 2-unsubstituted 1,3-dithiolanes.

  • Article
  • Open Access
4 Citations
3,715 Views
12 Pages

22 August 2022

Cyclic-olefin-copolymer (COC)-based microfluidic devices are increasingly becoming the center of highly valuable research for in situ X-ray measurements due to their compatibility with X-rays, biological compounds, chemical resistance, optical proper...

  • Review
  • Open Access
53 Citations
8,524 Views
23 Pages

The focus of structural biology is shifting from the determination of static structures to the investigation of dynamical aspects of macromolecular function. With time-resolved macromolecular crystallography (TRX), intermediates that form and decay d...

  • Short Note
  • Open Access
1 Citations
2,491 Views
4 Pages

3,5-Dithiatricyclo[5.2.1.02,6]decan-4-one

  • R. Alan Aitken,
  • Neil S. Keddie and
  • Alexandra M. Z. Slawin

24 April 2020

The X-ray structure of the title compound has been determined and the structure shows an exo-configured planar dithiolanone ring. This is in contrast to the few previous dithiolanones to be characterised crystallographically, which are all twisted.

  • Article
  • Open Access
3 Citations
4,073 Views
18 Pages

Anomalous Behavior in the Atomic Structure of Nb3Sn under High Pressure

  • Irene Schiesaro,
  • Simone Anzellini,
  • Rita Loria,
  • Raffaella Torchio,
  • Tiziana Spina,
  • René Flükiger,
  • Tetsuo Irifune,
  • Enrico Silva and
  • Carlo Meneghini

25 March 2021

In the present study, the local atomic structure of a Nb3Sn superconductor sample has been probed by X-ray absorption fine structure (XAFS) as a function of hydrostatic pressure (from ambient up to 26 GPa) using a diamond anvil cell set-up. The analy...

  • Feature Paper
  • Article
  • Open Access
2,459 Views
18 Pages

Local Crystallographic Texture of Alpha Quartz in Silicified Wood (Late Triassic, Madagascar)

  • Alexey Pakhnevich,
  • Tatiana Lychagina,
  • Sancia Morris and
  • Dmitry Nikolayev

8 November 2024

Compositional and anatomical studies of silicified wood have been carried out extensively all around the world. The classification of silicified wood as such deals with all the forms and phases of silica that come under its umbrella. One such class o...

  • Article
  • Open Access
2 Citations
2,017 Views
15 Pages

20 December 2023

The phosphole ring is known as a useful building block for constructing π-conjugated organic materials. Here, we report ladder-type benzophospholo[3,2-b]indole (BPI) derivatives where the phosphole and the pyrrole rings are directly fused. Compoun...

  • Short Note
  • Open Access
1 Citations
4,395 Views
6 Pages

Diethyl pyrrole-2,5-dicarboxylate

  • R. Alan Aitken,
  • Charles Bloomfield,
  • Liam J. R. McGeachie and
  • Alexandra M. Z. Slawin

17 February 2020

The title compound was obtained in moderate yield by a new and unexpected base-induced ring contraction from a 1,4-thiazine precursor. Its X-ray structure showing hydrogen bonded dimers was compared with those of other crystallographically characteri...

  • Article
  • Open Access
4 Citations
4,618 Views
13 Pages

Kilohertz Macromolecular Crystallography Using an EIGER Detector at Low X-ray Fluxes

  • Krishna P. Khakurel,
  • Shirly Espinoza,
  • Martin Savko,
  • Vitaly Polovinkin,
  • Jan Dohnalek,
  • William Shepard,
  • Angelina Angelova,
  • Janos Hajdu,
  • Jakob Andreasson and
  • Borislav Angelov

16 December 2020

Time-resolved in-house macromolecular crystallography is primarily limited by the capabilities of the in-house X-ray sources. These sources can only provide a time-averaged structure of the macromolecules. A significant effort has been made in the de...

  • Article
  • Open Access
13 Citations
2,889 Views
11 Pages

14 November 2022

Serial crystallography (SX) enables the determination of room-temperature structures with minimal radiation damage. The photon flux of the pink beam of 1.2% bandwidth (BW) is one order higher than that of the monochromatic beam from a silicon crystal...

  • Article
  • Open Access
1 Citations
1,453 Views
13 Pages

29 October 2024

Structures of some hydrogenated products and intermediates, prepared by a heterogeneous Pd/C or Ru/C catalyst starting from 4-pyridinecarbonitrile (4PN), in water and in the presence of an acidic additive (HCl or H2SO4), were confirmed in various sal...

  • Article
  • Open Access
11 Citations
7,134 Views
8 Pages

12 August 2011

A series of quinoxaline 1,4-di-N-oxide analogues were prepared from benzofurazan N-oxide derivatives and β-diketone ester compounds by the improved Beirut reaction. The structures of the target products were characterized by NMR, MS, IR and elemental...

  • Article
  • Open Access
546 Views
13 Pages

Novel 2D Porous Metal–Organic Frameworks: Synthesis, X-Ray Structure, Thermal, and Hirshfeld Surface Analyses

  • Rupam Sen,
  • Mahananda Roy,
  • Sriparna Sanyal,
  • Arpan Dolui,
  • Paula Brandão and
  • Zhi Lin

15 November 2025

In the present study, we have developed a series of compounds [M(tcm)2(bix)4]n [where M = Co (1), Ni (2), and Cu (3)] using tricyanomethanide (tcm) and 1,4-bis(imidazol-1-ylmethyl)benzene (bix) ligands. The compounds were characterized by elemental a...

  • Editorial
  • Open Access
2,512 Views
3 Pages

27 July 2021

This Special Issue of Chemistry is dedicated to Dr. Howard D. Flack (1943–2017), a renowned crystallographer who transformed the way in which, by using single crystal X-ray diffraction, we are able to determine the absolute structure of a crystalline...

  • Article
  • Open Access
2 Citations
2,666 Views
11 Pages

Properties on Yttrium-Doped/Undoped Barium Cerate and Barium Zirconate Thin Films Formed by E-Beam Vapor Deposition

  • Monica Susana Campos Covarrubias,
  • Mantas Sriubas,
  • Kristina Bockute,
  • Aurelija Poskaite,
  • Rokas Vazgys,
  • Maria Gazda and
  • Giedrius Laukaitis

24 June 2022

As electrolyte materials for proton conductive fuel cells, perovskite-type materials such as barium cerates and barium zirconates have received a lot of attention due to their high protonic conduction at intermediate temperatures. Yet, the crystallin...

  • Article
  • Open Access
2 Citations
3,030 Views
9 Pages

Crystal Structure of Mixed Np(V)-Ammonium Carbonate

  • Iurii M. Nevolin,
  • Vladimir G. Petrov,
  • Mikhail S. Grigoriev,
  • Alexei A. Averin,
  • Andrey A. Shiryaev,
  • Anna D. Krot,
  • Konstantin I. Maslakov,
  • Yury A. Teterin and
  • Alexander M. Fedoseev

13 December 2022

This work presents details of the synthesis, properties and structure of a novel neptunium carbonate (NH4)[NpO2CO3], a member of the M[AnO2CO3] (M = K, (NH4), Rb, Cs) class of compounds. Carbonates play an important role in the migration of actinides...

  • Article
  • Open Access
38 Citations
4,561 Views
12 Pages

29 September 2019

Two new antimicrobial bisabolane-type sesquiterpenoid derivatives, ent-aspergoterpenin C (compound 1) and 7-O-methylhydroxysydonic acid (2), and two new butyrolactone-type monoterpenoids, pestalotiolactones C (3) and D (4), along with a known monoter...

  • Communication
  • Open Access
1 Citations
2,580 Views
7 Pages

21 March 2024

We report the growth of single crystals and X-ray diffraction characterization of the quasi-one-dimensional spin chain compound, Li2CuO2. The single crystals were grown using the high-temperature solution growth technique. The resulting blade-shaped...

  • Communication
  • Open Access
5 Citations
6,739 Views
8 Pages

29 December 2016

In spite of the enormous biological and clinical significance of penicillin-binding protein (PBP)/β-lactamase (βL), few of their many homologs (PBP)/βLs homologs) have been studied crystallographically, and have known functions. Herein, X-ray crystal...

  • Article
  • Open Access
54 Citations
8,500 Views
11 Pages

31 October 2013

The reaction of 1,8-diaminooctane with hydroiodic acid in the presence of iodine gave a new polyiodide-containing salt: 1,8-diaminiumoctane bis(triiodide), (H3N-(CH2)8-NH3)[I3]2. The title compound has been characterized by crystallographic and spect...

  • Short Note
  • Open Access
1 Citations
2,559 Views
6 Pages

(E)-5-[Bromo(phenyl)methylene]-4-phenyl-2-(p-tolyl)-4,5-dihydrooxazole

  • Nobuyoshi Morita,
  • Saki Kurami,
  • Naho Ishii,
  • Kosaku Tanaka,
  • Yoshimitsu Hashimoto and
  • Osamu Tamura

2 February 2024

One-pot synthesis of (E)-5-[bromo(phenyl)methylene]-4-phenyl-2-(p-tolyl)-4,5-dihydrooxazole (9) from propargylic alcohol 5 and p-toluamide (6) was achieved via gold(III)-catalyzed propargylic substitution, followed by gold(III)-catalyzed bromocycliza...

  • Article
  • Open Access
1 Citations
3,278 Views
17 Pages

Phases and Interfaces in the Cr–Fe–Si Ternary System: X-ray Diffraction and Electron Microscopy Study

  • Elena I. Suvorova,
  • Natalya A. Arkharova,
  • Anna G. Ivanova,
  • Fedor Yu. Solomkin and
  • Philippe A. Buffat

The ternary Cr-Fe-Si system was investigated with X-ray diffraction, energy dispersive X-ray spectrometry, scanning and transmission electron microscopy, and electron diffraction. Samples melted at 1723 K were examined right after cooling or after an...

  • Article
  • Open Access
6 Citations
4,633 Views
20 Pages

X-ray Single Crystal Structure, Tautomerism Aspect, DFT, NBO, and Hirshfeld Surface Analysis of a New Schiff Bases Based on 4-Amino-5-Indol-2-yl-1,2,4-Triazole-3-Thione Hybrid

  • Ahmed T. A. Boraei,
  • Saied M. Soliman,
  • Matti Haukka,
  • El Sayed H. El Tamany,
  • Abdullah Mohammed Al-Majid and
  • Assem Barakat

29 August 2021

Four different new Schiff basses tethered indolyl-triazole-3-thione hybrid were designed and synthesized. X-ray single crystal structure, tautomerism, DFT, NBO and Hirshfeld analysis were explored. X-ray crystallographic investigations with the aid o...

  • Article
  • Open Access
23 Citations
11,409 Views
12 Pages

17 August 2010

A mild and efficient two-step synthesis of 3-substituted β-carbolinone derivatives from 3-substituted β-carboline in good yields is described. A possible reaction mechanism for the formation of the skeleton of β-carbolin-1-one is proposed. The struct...

  • Article
  • Open Access
11 Citations
4,858 Views
11 Pages

Yellow Pigments, Fomitellanols A and B, and Drimane Sesquiterpenoids, Cryptoporic Acids P and Q, from Fomitella fraxinea and Their Inhibitory Activity against COX and 5-LO

  • Kazuko Yoshikawa,
  • Kazuaki Koso,
  • Masumi Shimomura,
  • Masami Tanaka,
  • Hirofumi Yamamoto,
  • Hiroshi Imagawa,
  • Shigenobu Arihara and
  • Toshihiro Hashimoto

9 April 2013

Yellow pigments, fomitellanols A (1a) and B (2a), and drimane-type sesquiterpenoid ethers of isocitric acid, cryptoporic acids P (3) and Q (4), have been isolated from the fruiting bodies of Fomitella fraxinea (Polyporaceae). Their structures were es...

  • Correction
  • Open Access
4 Citations
4,354 Views
2 Pages

Correction: Three New Ursane-type Triterpenoids from the Stems of Saprosma merrillii. Molecules 2013, 18, 14496-14504

  • Jun-Yan Zhang,
  • Wen-Hao Chen,
  • Da-Shuai Zhang,
  • Guang-Ying Chen,
  • Xue-Ming Zhou,
  • Xiao-Ping Song and
  • Chang-Ri Han

13 November 2014

The authors wish to inform readers that there are several minor errors and omissions in the chemical structures of compounds 1–3 shown in Figure 1 of this paper [1]. Their structures were re-elucidated by detailed analysis of the NMR, MS, and X-ray c...

  • Review
  • Open Access
33 Citations
8,593 Views
30 Pages

The catalytic cycle of the oxygen-evolving complex (OEC) of photosystem II (PSII) comprises five intermediate states Si (i = 0–4), from the most reduced S0 state to the most oxidized S4, which spontaneously evolves dioxygen. The precise geometr...

  • Review
  • Open Access
37 Citations
6,442 Views
15 Pages

13 February 2020

Ever since the first structure of an enzyme, lysozyme, was solved, scientists have been eager to explore how these molecules perform their catalytic function. There has been an overwhelmingly large body of publications that report the X-ray structure...

  • Review
  • Open Access
21 Citations
10,200 Views
9 Pages

Howard Flack and the Flack Parameter

  • David John Watkin and
  • Richard Ian Cooper

23 September 2020

The Flack Parameter is now almost universally reported for all chiral materials characterized by X-ray crystallography. Its elegant simplicity was an inspired development by Howard Flack, and although the original algorithm for its computation has be...

  • Review
  • Open Access
4 Citations
4,907 Views
28 Pages

9 January 2025

Grazing incidence small- and wide-angle X-ray scattering (GISAXS, GIWAXS) has been widely applied for the study of functional thin films, be it for the characterization of nanostructured morphologies in block copolymers, nanocomposites, and nanoparti...

  • Article
  • Open Access
1 Citations
3,100 Views
19 Pages

Synthesis of Indoloquinolines: An Intramolecular Cyclization Leading to Advanced Perophoramidine-Relevant Intermediates

  • Craig A. Johnston,
  • David B. Cordes,
  • Tomas Lebl,
  • Alexandra M. Z. Slawin and
  • Nicholas J. Westwood

5 October 2021

The bioactive natural product perophoramidine has proved a challenging synthetic target. An alternative route to its indolo[2,3-b]quinolone core structure involving a N-chlorosuccinimde-mediated intramolecular cyclization reaction is reported. Attemp...

  • Review
  • Open Access
3 Citations
4,615 Views
16 Pages

19 November 2022

Proteins that use cysteine residues for catalysis or regulation are widely distributed and intensively studied, with many biomedically important examples. Enzymes where cysteine is a catalytic nucleophile typically generate covalent catalytic interme...

  • Review
  • Open Access
4 Citations
3,666 Views
32 Pages

24 February 2021

Single-crystal X-ray diffraction structures of organotin compounds bearing hemicarbonate and carbonate ligands were recently reviewed by us—“CO2 Derivatives of Molecular Tin Compounds. Part 1: Hemicarbonato and Carbonato Complexes”, Inorganics 2020,...

  • Article
  • Open Access
38 Citations
8,240 Views
13 Pages

Five New Secondary Metabolites Produced by a Marine-Associated Fungus, Daldinia eschscholzii

  • Zheng-Xi Hu,
  • Yong-Bo Xue,
  • Xiao-Bin Bi,
  • Jin-Wen Zhang,
  • Zeng-Wei Luo,
  • Xiao-Nian Li,
  • Guang-Min Yao,
  • Jian-Ping Wang and
  • Yong-Hui Zhang

20 November 2014

Five new compounds, including a benzopyran ribonic glycoside, daldiniside A (1), two isocoumarin ribonic glycosides, daldinisides B (2) and C (3), and two alkaloids, 1-(3-indolyl)-2R,3-dihydroxypropan-1-one (4) and 3-ethyl-2, 5-pyrazinedipropanoic...

  • Article
  • Open Access
1 Citations
1,285 Views
14 Pages

14 February 2025

The determination of tungsten oxidation states and W–ligand bond lengths for pyranopterin tungsten enzymes can be negatively impacted by Fourier series termination effects and photodamage/photoreduction in the X-ray beam. As a result, a new set...

  • Article
  • Open Access
8 Citations
2,674 Views
11 Pages

Microstructure and Magnetic Properties of Nanocrystalline Fe60−xCo25Ni15Six Alloy Elaborated by High-Energy Mechanical Milling

  • Nawel Khitouni,
  • Béchir Hammami,
  • Núria Llorca-Isern,
  • Wael Ben Mbarek,
  • Joan-Josep Suñol and
  • Mohamed Khitouni

19 September 2022

In the present work, the effect of Si addition on the magnetic properties of Fe60−xCo25Ni15Six (x = 0, 5, 10, 20, and 30 at%) alloys prepared by mechanical alloying was analyzed by X-ray diffraction and magnetic vibrating sample magnetometry an...

  • Article
  • Open Access
1,677 Views
14 Pages

Molecular Conductors Based on Dimethylcyclohexene-Fused Tetrathiafulvalene

  • Masahiro Fujisaki,
  • Ryoya Naito,
  • Takashi Shirahata,
  • Yoshitaka Kawasugi,
  • Naoya Tajima and
  • Yohji Misaki

25 November 2024

Chiral electroactive materials have attracted attention for the effects of electrical magnetochiral anisotropy (eMChA) and chirality-induced spin selectivity (CISS). The combination of tetrathiafulvalene (TTF) with chiral moieties is one way to acces...

  • Article
  • Open Access
2,008 Views
9 Pages

Synthesis and Characterization of the Double Perovskite Y2MgRuO6

  • Sahana Rößler,
  • Ulrich Burkhardt,
  • Liu H. Tjeng and
  • Alexander C. Komarek

11 September 2023

A new double perovskite compound with nominal composition Y2MgRuO6 is synthesized by the floating zone technique. X-ray diffraction measurements reveal a monoclinic crystal structure with space group P21/n and monoclinic angle β = 90.178(1)ͨ...

  • Article
  • Open Access
14 Citations
5,564 Views
10 Pages

19 April 2017

Single crystal diamond has been recognized as the optimal tool material in ultra-precision machining. However, the excessive tool wear prevents it from cutting ferrous materials. This paper conducts a series of thermal analysis tests under the condit...

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