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28 Results Found

  • Article
  • Open Access
7 Citations
2,893 Views
22 Pages

Comparative Expression Profiling Reveals the Regulatory Effects of Dietary Mannan Oligosaccharides on the Intestinal Immune Response of Juvenile Megalobrama amblycephala against Aeromonas hydrophila Infection

  • Xiaoheng Zhao,
  • Xu Wang,
  • Hong Li,
  • Yunlong Liu and ,
  • Yancui Zheng,
  • Hongping Li,
  • Minying Zhang,
  • Hanliang Cheng,
  • Jianhe Xu and
  • Zhujin Ding
  • + 6 authors+ 1 author

22 January 2023

Mannan oligosaccharides (MOS) are functional oligosaccharides with beneficial effects on the non-specific immunity of Megalobrama amblycephala, but systematic studies on the immunomodulatory mechanisms of MOS are still lacking. To investigate the pro...

(This article belongs to the Special Issue Fish Immunology 3.0)
  • Article
  • Open Access
6 Citations
4,598 Views
17 Pages

Placental Transcription Profiling in 6–23 Weeks’ Gestation Reveals Differential Transcript Usage in Early Development

  • Konstantinos J. Bogias,
  • Stephen M. Pederson,
  • Shalem Leemaqz,
  • Melanie D. Smith and ,
  • Dale McAninch,
  • Tanja Jankovic-Karasoulos,
  • Dylan McCullough,
  • Qianhui Wan,
  • Tina Bianco-Miotto and
  • Claire T. Roberts
  • + 6 authors+ 1 author

The human placenta is a rapidly developing transient organ that is key to pregnancy success. Early development of the conceptus occurs in a low oxygen environment before oxygenated maternal blood begins to flow into the placenta at ~10–12 weeks...

(This article belongs to the Special Issue New Frontiers in Placental Development and Fetal Growth: Focus on Molecular Regulatory Mechanisms and Pharmacology)
  • Article
  • Open Access
4 Citations
2,792 Views
18 Pages

Peonidin-3-O-glucoside and Resveratrol Increase the Viability of Cultured Human hFOB Osteoblasts and Alter the Expression of Genes Associated with Apoptosis, Osteoblast Differentiation and Osteoclastogenesis

  • Keila C. Ostos Mendoza,
  • Karen D. Garay Buenrostro,
  • Pinal N. Kanabar,
  • Mark Maienschein-Cline and ,
  • Nina S. Los,
  • Zarema Arbieva,
  • Nishikant A. Raut,
  • Temitope O. Lawal,
  • Alice M. López and
  • Gail B. Mahady
  • + 7 authors+ 2 authors

21 July 2023

High-throughput RNA-sequencing can determine the impact of nutrients and their combinations on gene transcription levels in osteocytes, and clarify the biological pathways associated with their impact on bone tissues. Previously, we reported that res...

(This article belongs to the Special Issue Bone Metabolism and Plant-Derived Pharmaceuticals)
  • Article
  • Open Access
14 Citations
5,063 Views
20 Pages

Low-Copy Genes in Terpenoid Metabolism: The Evolution and Expression of MVK and DXR Genes in Angiosperms

  • Natacha Silva,
  • Suzana Tiemi Ivamoto-Suzuki,
  • Paula Oliveira Camargo,
  • Raíssa Scalzoni Rosa and ,
  • Luiz Filipe Protasio Pereira and
  • Douglas Silva Domingues
  • + 1 author+ 0 author

19 April 2020

Terpenoids are a diverse class of metabolites that impact plant metabolism in response to environmental cues. They are synthesized either via a predominantly cytosolic (MVA) pathway or a plastidic pathway (MEP). In Arabidopsis, several enzymes from t...

(This article belongs to the Section Plant Molecular Biology)
  • Article
  • Open Access
2 Citations
2,342 Views
21 Pages

Transcriptomic Analysis Divulges Differential Expressions of Microglial Genes After Microglial Repopulation in Mice

  • Muhammad Tariq Hafeez,
  • Hao Gao,
  • Furong Ju,
  • Fujian Qi and ,
  • Ting Li and
  • Shengxiang Zhang
  • + 1 author+ 0 author

11 February 2025

Microglia are key immune cells in the central nervous system (CNS) and maintain hemostasis in physiological conditions. Microglial depletion leads to rapid repopulation, but the gene expression and signaling pathways related to repopulation remain un...

(This article belongs to the Section Molecular Neurobiology)
  • Article
  • Open Access
20 Citations
7,184 Views
19 Pages

Identification of Ramie Genes in Response to Pratylenchus coffeae Infection Challenge by Digital Gene Expression Analysis

  • Yongting Yu,
  • Liangbin Zeng,
  • Zhun Yan,
  • Touming Liu and ,
  • Kai Sun,
  • Taotao Zhu and
  • Aiguo Zhu
  • + 2 authors+ 0 author

11 September 2015

Root lesion disease, caused by Pratylenchus coffeae, seriously impairs the growth and yield of ramie, an important natural fiber crop. The ramie defense mechanism against P. coffeae infection is poorly understood, which hinders efforts to improve re...

(This article belongs to the Special Issue Plant Microbe Interaction)
  • Article
  • Open Access
33 Citations
10,327 Views
27 Pages

Genome-Wide Identification and Analysis of Drought-Responsive Genes and MicroRNAs in Tobacco

  • Fuqiang Yin,
  • Cheng Qin,
  • Jian Gao,
  • Ming Liu and ,
  • Xirong Luo,
  • Wenyou Zhang,
  • Hongjun Liu,
  • Xinhui Liao,
  • Yaou Shen and
  • Guangtang Pan
  • + 9 authors+ 4 authors

12 March 2015

Drought stress response is a complex trait regulated at transcriptional and post-transcriptional levels in tobacco. Since the 1990s, many studies have shown that miRNAs act in many ways to regulate target expression in plant growth, development and...

(This article belongs to the Special Issue Abiotic Stress and Gene Networks in Plants)
  • Article
  • Open Access
54 Citations
10,349 Views
31 Pages

Transcriptome Analysis and Discovery of Genes Involved in Immune Pathways from Coelomocytes of Sea Cucumber (Apostichopus japonicus) after Vibrio splendidus Challenge

  • Qiong Gao,
  • Meijie Liao,
  • Yingeng Wang,
  • Bin Li and ,
  • Zheng Zhang,
  • Xiaojun Rong,
  • Guiping Chen and
  • Lan Wang
  • + 3 authors+ 0 author

17 July 2015

Vibrio splendidus is identified as one of the major pathogenic factors for the skin ulceration syndrome in sea cucumber (Apostichopus japonicus), which has vastly limited the development of the sea cucumber culture industry. In order to screen the im...

(This article belongs to the Special Issue Fish Molecular Biology)
  • Article
  • Open Access
1 Citations
5,929 Views
12 Pages

Effects of Dichrostachys glomerata and Cissus quadrangularis Extracts on GLP-1 Secretion and DPP-4 Activity in Overweight and Obese Individuals: A Randomized Controlled Trial

  • Janvier Youovop,
  • Guy Takuissu,
  • Régine Minoue,
  • Felix Nwang and ,
  • Maryam Adegboyega,
  • Crista Arrey,
  • Inelle Makamwe and
  • Julius Oben
  • + 3 authors+ 0 author

25 December 2025

Background and Objectives: Dichrostachys glomerata and Cissus quadrangularis, two species traditionally used in Cameroon, are recognized for their weight-reducing potential. This study examined the effects of standardized extracts of these botanicals...

  • Article
  • Open Access
15 Citations
3,515 Views
13 Pages

Transcriptomic and Proteomic Analysis Reveals Mechanisms of Patulin-Induced Cell Toxicity in Human Embryonic Kidney Cells

  • Nianfa Han,
  • Ruilin Luo,
  • Jiayu Liu,
  • Tianmin Guo and ,
  • Jiayu Feng and
  • Xiaoli Peng
  • + 1 author+ 0 author

29 October 2020

Patulin (PAT) is a natural mycotoxin that commonly contaminates fruits and fruit-based products. Previous work indicated that PAT-induced apoptosis in which reactive oxygen species (ROS) are involved in human embryonic kidney (HEK293) cells. To uncov...

(This article belongs to the Section Mycotoxins)
  • Article
  • Open Access
2 Citations
777 Views
16 Pages

The Involvement of Melatonin in the Dimorphism of Glucose and Lipid Metabolism of Tilapia

  • Jingkai Qin,
  • Chenguang Liu,
  • Zongzhen Liao,
  • Yang Yu and ,
  • Caiyun Sun and
  • Wensheng Li
  • + 1 author+ 0 author

21 December 2025

In tilapia, males grow faster than females, but the metabolites/pathways behind this sexual dimorphism remain unclear. In this study, we first examined growth, feeding, serum biochemical parameters, and mRNA expression in tilapia under mono-sex and m...

(This article belongs to the Special Issue Vertebrate Comparative Genomics)
  • Article
  • Open Access
16 Citations
7,347 Views
12 Pages

Effects of MicroRNA-23a on Differentiation and Gene Expression Profiles in 3T3-L1 Adipocytes

  • Yong Huang,
  • Jinxiu Huang,
  • Renli Qi,
  • Qi Wang and ,
  • Yongjiang Wu and
  • Jing Wang
  • + 1 author+ 0 author

24 October 2016

MicroRNAs (miRNAs) are small non-coding RNA molecules that regulate growth, development, and programmed death of cells. A newly-published study has shown that miRNA-23a could regulate 3T3-L1 adipocyte differentiation. Here, we identified miRNA-23a as...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
30 Citations
7,053 Views
15 Pages

Digital Gene Expression Analysis of Ponkan Mandarin (Citrus reticulata Blanco) in Response to Asia Citrus Psyllid-Vectored Huanglongbing Infection

  • Yun Zhong,
  • Chunzhen Cheng,
  • Bo Jiang,
  • Nonghui Jiang and ,
  • Yongyan Zhang,
  • Minlun Hu and
  • Guangyan Zhong
  • + 2 authors+ 0 author

Citrus Huanglongbing (HLB), the most destructive citrus disease, can be transmitted by psyllids and diseased budwoods. Although the final symptoms of the two main HLB transmission ways were similar and hard to distinguish, the host responses might be...

(This article belongs to the Special Issue Plant Innate Immunity)
  • Article
  • Open Access
34 Citations
9,916 Views
15 Pages

RNA-Seq Transcriptome Analysis of Maize Inbred Carrying Nicosulfuron-Tolerant and Nicosulfuron-Susceptible Alleles

  • Xiaomin Liu,
  • Xian Xu,
  • Binghua Li,
  • Xueqing Wang and ,
  • Guiqi Wang and
  • Moran Li
  • + 1 author+ 0 author

13 March 2015

Postemergence applications of nicosulfuron can cause great damage to certain maize inbred lines and hybrids. Variation among different responses to nicosulfuron may be attributed to differential rates of herbicide metabolism. We employed RNA-Seq anal...

(This article belongs to the Special Issue Plant Molecular Biology)
  • Article
  • Open Access
17 Citations
5,921 Views
21 Pages

Transcriptomic Profiling and Physiological Analysis of Haloxylon ammodendron in Response to Osmotic Stress

  • Hui-Juan Gao,
  • Xin-Pei Lü,
  • Ling Zhang,
  • Yan Qiao and ,
  • Qi Zhao,
  • Yong-Ping Wang,
  • Meng-Fei Li and
  • Jin-Lin Zhang
  • + 3 authors+ 0 author

Haloxylon ammodendron, a perennial xero-halophyte, is an essential species for investigating the effects of drought on desert tree. To gain a comprehensive knowledge on the responses of H. ammodendron to drought stress, we specially performed the mol...

(This article belongs to the Section Molecular Plant Sciences)
  • Article
  • Open Access
40 Citations
10,677 Views
19 Pages

Physiological and Transcriptomic Responses of Chinese Cabbage (Brassica rapa L. ssp. Pekinensis) to Salt Stress

  • Nianwei Qiu,
  • Qian Liu,
  • Jingjuan Li,
  • Yihui Zhang and ,
  • Fengde Wang and
  • Jianwei Gao
  • + 1 author+ 0 author

12 September 2017

Salt stress is one of the major abiotic stresses that severely impact plant growth and development. In this study, we investigated the physiological and transcriptomic responses of Chinese cabbage “Qingmaye” to salt stress, a main variety in North Ch...

(This article belongs to the Special Issue Abiotic Stress and Gene Networks in Plants 2017)
  • Article
  • Open Access
4 Citations
6,672 Views
16 Pages

The liver is structurally organized into zonation, where Liver Sinusoidal Endothelial Cells (LSECs) play a crucial role during chronic liver injury and the early stages of fibrosis. Fibrosis can be reversed if diagnosed early at the molecular level i...

(This article belongs to the Collection Feature Papers in International Journal of Translational Medicine)
  • Article
  • Open Access
9 Citations
4,945 Views
15 Pages

Comparison of LncRNA Expression Profiles during Myogenic Differentiation and Adipogenic Transdifferentiation of Myoblasts

  • Renli Qi,
  • Xiaoyu Qiu,
  • Yong Zhang,
  • Jing Wang and ,
  • Qi Wang,
  • Min Wu,
  • Jinxiu Huang and
  • Feiyun Yang
  • + 3 authors+ 0 author

Myoblasts could transdifferentiate into adipocytes or adipocyte-like cells, which have the capability of producing and storing intracellular lipids. Long-chain non-coding RNAs (lncRNAs) have many important physiological functions in eukaryotes, which...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
4 Citations
4,439 Views
12 Pages

Evaluating the Effects of Cryopreservation on the Viability and Gene Expression of Porcine-Ear-Skin Fibroblasts

  • Jiacheng Cao,
  • Yingyu Xie,
  • Jing Wang,
  • Yongjie Huang and ,
  • Xiaohan Zhang,
  • Tianfang Xiao and
  • Shaoming Fang
  • + 2 authors+ 0 author

20 March 2023

Owing to the inherent heterogeneity and plasticity of fibroblasts, they are considered as the conventional biological resources for basic and clinical medical research. Thus, it is essential to generate knowledge about the establishment of fibroblast...

(This article belongs to the Special Issue Advances in Pig Breeding and Genetics)
  • Article
  • Open Access
2 Citations
3,396 Views
15 Pages

Proteomic Profiling and Pathway Analysis of Acid Stress-Induced Vasorelaxation of Mesenteric Arteries In Vitro

  • Ipsita Mohanty,
  • Sudeshna Banerjee,
  • Arabinda Mahanty,
  • Sasmita Mohanty and ,
  • Nihar Ranjan Nayak,
  • Subas Chandra Parija and
  • Bimal Prasanna Mohanty
  • + 2 authors+ 0 author

29 April 2022

Although metabolic acidosis is associated with numerous pathophysiological conditions and its vasorelaxation effects have been well described in different animal and culture models, the molecular mechanisms of acidosis-induced vasorelaxation are not...

(This article belongs to the Special Issue Genetic and Epigenetic Regulation of Placental Development and Disease)
  • Article
  • Open Access
13 Citations
2,829 Views
28 Pages

Adjuvant Effects of a CC Chemokine for Enhancing the Efficacy of an Inactivated Streptococcus agalactiae Vaccine in Nile Tilapia (Oreochromis niloticus)

  • Chayanit Soontara,
  • Anurak Uchuwittayakul,
  • Pattanapon Kayansamruaj,
  • Piti Amparyup and ,
  • Ratree Wongpanya and
  • Prapansak Srisapoome
  • + 1 author+ 0 author

In this study, the ability of a CC chemokine (On-CC1) adjuvant to enhance the efficacy of a formalin-killed Streptococcus agalactiae vaccine (WC) in inducing immune responses against S. agalactiae in Nile tilapia was investigated through immune-relat...

(This article belongs to the Special Issue Bacterial and Viral Immunity and Vaccination)
  • Article
  • Open Access
16 Citations
2,449 Views
16 Pages

3 August 2024

The cultivation of Auricularia heimuer, a species of edible mushroom, heavily relies on the availability of wood resources serving as substrate for the growth of the species. To ensure the sustainable development of the A. heimuer industry and optimi...

(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
  • Article
  • Open Access
1 Citations
1,152 Views
13 Pages

Gas Plasma-Induced Oxidative Transformation of Glucose

  • Mohsen Ahmadi,
  • Kai Masur,
  • Sander Bekeschus and
  • Kristian Wende

20 November 2025

Background: Glucose, a central carbohydrate in higher organisms’ metabolism, can undergo extensive oxidative modification under conditions of excessive inflammation or elevated reactive oxygen and nitrogen species (RONS). Such modifications yie...

(This article belongs to the Special Issue Applications and Perspectives of Cold Electric Discharge Plasmas in Biomedicine and Bioengineering)
  • Article
  • Open Access
2 Citations
1,844 Views
16 Pages

The dedifferentiation of smooth muscle cells (SMCs) is the main cause of atherosclerosis and vascular calcification. This study integrated the gene expression data of multiple microarrays to identify relevant marker molecules. A total of 72 Gene Expr...

(This article belongs to the Section Cellular and Molecular Bioengineering)
  • Article
  • Open Access
7 Citations
3,796 Views
33 Pages

Genome-Wide Transcriptomic and Metabolomic Analyses Unveiling the Defence Mechanisms of Populus tremula against Sucking and Chewing Insect Herbivores

  • Filip Pastierovič,
  • Kanakachari Mogilicherla,
  • Jaromír Hradecký,
  • Alina Kalyniukova and ,
  • Ondřej Dvořák,
  • Amit Roy and
  • Ivana Tomášková
  • + 2 authors+ 0 author

Plants and insects coevolved as an evolutionarily successful and enduring association. The molecular arms race led to evolutionary novelties regarding unique mechanisms of defence and detoxification in plants and insects. While insects adopt mechanis...

(This article belongs to the Special Issue New Insights into Plants and Insects Interactions)
  • Article
  • Open Access
4 Citations
3,156 Views
14 Pages

Transcriptome Profile Analysis of Intestinal Upper Villus Epithelial Cells and Crypt Epithelial Cells of Suckling Piglets

  • Lijun Zou,
  • Yirui Shao,
  • Yinfeng Xu,
  • Yuliang Wu and ,
  • Jian Zhou,
  • Xia Xiong and
  • Yulong Yin
  • + 2 authors+ 0 author

7 September 2022

It is well known that the small intestinal epithelial cells of mammals rapidly undergo differentiation, maturation, and apoptosis. However, few studies have defined the physiological state and gene expression changes of enterocytes along the crypt-vi...

(This article belongs to the Special Issue Pork Production: Precision Feeding and Management)
  • Review
  • Open Access
1 Citations
1,191 Views
18 Pages

Major depressive disorder (MDD) lacks reliable laboratory tests for diagnosis and treatment monitoring, underscoring the need for robust molecular readouts in blood. Beyond symptom-based classification, MDD can also be viewed as a condition involving...

(This article belongs to the Special Issue Molecular Biomarkers in Mood Disorders)
  • Article
  • Open Access
3 Citations
4,248 Views
24 Pages

Integrated Proteo-Transcriptomic Analyses Reveal Insights into Regulation of Pollen Development Stages and Dynamics of Cellular Response to Apple Fruit Crinkle Viroid (AFCVd)-Infection in Nicotiana tabacum

  • Ankita Shrestha,
  • Ajay Kumar Mishra,
  • Jaroslav Matoušek,
  • Lenka Steinbachová and ,
  • David Potěšil,
  • Vishnu Sukumari Nath,
  • Praveen Awasthi,
  • Tomáš Kocábek,
  • Jernej Jakse and
  • Gerhard Steger
  • + 8 authors+ 3 authors

18 November 2020

Tobacco (Nicotiana tabacum) pollen is a well-suited model for studying many fundamental biological processes owing to its well-defined and distinct development stages. It is also one of the major agents involved in the transmission of infectious viro...

(This article belongs to the Special Issue Molecular Mechanisms of Viroids and Viroid Diseases)