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Horticulturae, Volume 11, Issue 10 (October 2025) – 101 articles

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15 pages, 2879 KB  
Article
RsNAC134 Regulates Taproot Skin Color via Positive Regulation of the Chlorophyll Degradation Pathway in Radish (Raphanus sativus)
by Weifang Chen, Chenghuan Yan, Leifu Chen, Lei Cui and Weiling Yuan
Horticulturae 2025, 11(10), 1248; https://doi.org/10.3390/horticulturae11101248 - 16 Oct 2025
Abstract
The color of radish taproot skin is an important commercial quality trait that directly affects the visual judgment of consumers. The green/white coloration of radish taproots is caused by chlorophyll accumulation or fading; however, research on the mechanisms of color regulation in green/white [...] Read more.
The color of radish taproot skin is an important commercial quality trait that directly affects the visual judgment of consumers. The green/white coloration of radish taproots is caused by chlorophyll accumulation or fading; however, research on the mechanisms of color regulation in green/white variations remains limited. Therefore, we analyzed transcriptome data from the green radish ‘QZ-16’ and white radish ‘55’ and identified a key color-regulating gene, RsNAC134. The expression of RsNAC134 was significantly reduced in green radish ‘QZ-16’ but markedly increased in white radish ‘55’. Heterologous overexpression of RsNAC134 in transgenic tomatoes resulted in chlorotic phenotypes. Quantitative real-time polymerase chain reaction revealed significant upregulation of chlorophyll degradation pathway genes SlSGR and SlPAO in transgenic tomatoes. Similarly, in white radish, expression of the key chlorophyll degradation genes, RsSGR, RsPAO1, and RsPAO2, was notably increased. Yeast one-hybrid and luciferase assays demonstrated that RsNAC134 directly bound to the promoters of RsSGR, RsPAO1, and RsPAO2. These findings suggest that RsNAC134 regulates chlorophyll degradation by modulating RsSGR, RsPAO1, and RsPAO2 expression, ultimately influencing the radish color transition (loss of green pigmentation) or retention of green coloration. This work unravels novel regulatory factors of chlorophyll degradation and elucidates the molecular network governing chlorophyll degradation, providing crucial insights into the molecular basis of epidermal color variation in radish taproots. Full article
(This article belongs to the Special Issue Breeding by Design: Advances in Vegetables)
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17 pages, 1236 KB  
Article
Dynamics of Quality Traits During Cold Storage in ‘Annurca’ Apples: Impact of 1-MCP and the Traditional Melaio Reddening Process
by Giandomenico Corrado, Alessandro Mataffo, Pasquale Scognamiglio, Carlo Molinaro, Maurizio Teobaldelli and Boris Basile
Horticulturae 2025, 11(10), 1247; https://doi.org/10.3390/horticulturae11101247 - 15 Oct 2025
Abstract
The ‘Annurca’ apple (Malus domestica), a PGI-protected Italian cultivar, undergoes a mandatory postharvest reddening process (melaio). While crucial for skin color development, this process is associated with flesh softening, creating a conflict with consumer demand for crispness. To resolve this quality [...] Read more.
The ‘Annurca’ apple (Malus domestica), a PGI-protected Italian cultivar, undergoes a mandatory postharvest reddening process (melaio). While crucial for skin color development, this process is associated with flesh softening, creating a conflict with consumer demand for crispness. To resolve this quality trade-off, this study compared different postharvest strategies over a five-month commercial cold storage. Specifically, we performed a time-series analysis of the evolution of ripening and skin color dynamics under three strategies: traditional reddening (Melaio), 1-methylcyclopropene application (MCP), and a 1-MCP treatment followed by reddening (MCP+Melaio). While 1-MCP effectively arrested firmness loss, maintaining firmness above 47 N compared to the Melaio-only treatment which dropped to 35.9 N by the end of storage, the pathways of skin color development differed profoundly. The MCP-only strategy led to a highly non-uniform and visually inconsistent appearance (average Total Color Difference, ΔE* > 12) that persisted throughout storage. In contrast, the traditional melaio process proved indispensable for guiding the fruit towards a significantly more homogeneous final coloration (∆E* ≈ 5.5). The integrated MCP+Melaio strategy successfully reconciled these divergent effects, preserving high flesh firmness (47.9 N) while achieving the superior skin color uniformity characteristic of the traditional process (final ΔE* ≈ 5.6). This study demonstrates that pre-treating ‘Annurca’ apples with 1-MCP before the melaio period offers a viable, scientifically validated approach to resolving the critical trade-off between texture and skin color, enabling the ‘Annurca’ industry to meet modern textural expectations while preserving its unique cultural and quality traditions. Full article
(This article belongs to the Section Postharvest Biology, Quality, Safety, and Technology)
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15 pages, 1648 KB  
Article
A Highly Efficient Protocol for Multiple In Vitro Somatic Shoot Organogenesis from the Hypocotyl- and Cotyledon-Derived Callus Tissues of Russian Cabbage Genotypes
by Marat R. Khaliluev, Nataliya V. Varlamova and Roman A. Komakhin
Horticulturae 2025, 11(10), 1246; https://doi.org/10.3390/horticulturae11101246 - 15 Oct 2025
Abstract
Generation of state-of-the-art highly productive cabbage genotypes (Brassica oleracea convar. capitata (L.) Alef.) with improved agronomic traits is attainable using modern biotechnological approaches. However, capitata cabbage is relatively recalcitrant to de novo shoot organogenesis from callus tissue, especially with loss of somatic [...] Read more.
Generation of state-of-the-art highly productive cabbage genotypes (Brassica oleracea convar. capitata (L.) Alef.) with improved agronomic traits is attainable using modern biotechnological approaches. However, capitata cabbage is relatively recalcitrant to de novo shoot organogenesis from callus tissue, especially with loss of somatic cell totipotency during genetic transformation. An effective and rapid protocol for in vitro indirect shoot organogenesis from hypocotyl and cotyledon explants derived from 6-day-old aseptic donor seedlings of Russian cabbage genotypes (the DH line as well as cvs. Podarok and Parus) has been developed. In order to obtain standardized donor explants, aseptic cabbage seeds were germinated under dim light conditions (30–40 µmol m−2 s−1) with a 16 h light/8 h dark photoperiod. Multiple indirect shoot organogenesis (1.47–4.93 shoots per explant) from both cotyledonary leaves and hypocotyl segments with a frequency of 55.2–89.1% was achieved through 45 days of culture on the 0.7% agar-solidified (w/v) Murashige and Skoog (MS) basal medium containing 2 mg/L 6-benzylaminopurine (6-BAP), 0.02 mg/L 1-naphthalene acetic acid (NAA), and 5 mg/L AgNO3. The regenerants were successfully rooted on an MS basal medium (69.2%) without plant growth regulators (PGRs), as well as supplemented with 0.5 mg/L NAA (86.8%). Subsequently, in vitro rooted cabbage plantlets were adapted to soil conditions with an efficiency of 85%. This rapid protocol, allowing for the performance of a full cycle from in vitro seed germination to growing adapted plantlets under ex vitro conditions over 95 days, can be successfully applied to induce an indirect shoot formation in various cabbage genotypes, and it is recommended to produce transgenic plants with improved quality traits and productivity. Full article
(This article belongs to the Special Issue The Role of Plant Growth Regulators in Horticulture)
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19 pages, 934 KB  
Article
Impact of Rainfall and Air Temperature Before Harvest on Content and Response of Carotenoids, Tocopherols, and Vitamin C to Postharvest Thermal Processing of Tomato
by Hussein G. Daood, Szilvia Ráth, Abdulnabi A. Abushita, Monika Máté and Lajos Helyes
Horticulturae 2025, 11(10), 1245; https://doi.org/10.3390/horticulturae11101245 - 15 Oct 2025
Abstract
This research aimed to explore the influence of climate factors, especially in the three weeks prior to harvest, on the reaction of key phytonutrients in industrial tomatoes used for juice thermal processing and their stability. The cultivation was performed in two areas with [...] Read more.
This research aimed to explore the influence of climate factors, especially in the three weeks prior to harvest, on the reaction of key phytonutrients in industrial tomatoes used for juice thermal processing and their stability. The cultivation was performed in two areas with differing climatic conditions. In the region with higher temperatures and rainfall, the levels and stability of carotenoids were lower compared to the area characterized by warm temperatures and minimal rainfall during both the growth and harvest phases of the tomatoes. The extraction of cold-break (CBE) tomatoes from relatively cool and wet environments resulted in a loss of total carotenoids, particularly lycopene, amounting to 66% and 58% of the initial raw tomato content in 2018 and 2019, respectively, while a markedly reduced loss of 10% was observed after the CBE of tomatoes from the warmer and drier region in both years (36% and 35%). In contrast, hot-break extraction (HBE) demonstrated a higher stability of lycopene compared to CBE, with losses of 43% and 53% in 2018 and 2019, respectively. Additionally, the stability of lycopene in HBE did not show significant differences between the cultivation sites. Climatic conditions influenced the accumulation of geometrical isomers and oxidized forms of lycopene and β-carotene, especially in tomatoes grown in areas with higher rainfall and lower temperatures. A similar trend in response was noted for β-carotene, lutein, phytoene, and phytofluene, as well as total and individual tocopherols. Regarding vitamin C, the environmental factors had no meaningful impact on the vitamin content in tomato fruits; however, its stability during processing, especially with hot-break extraction, was considerably influenced by the climatic conditions of the cultivation site, with p values ranging from <0.01 to <0.001 across different products in various years. The content and stability of phytonutrients in pomace, the by-product from tomato juice processing, were also assessed. In conclusion, tomato fruits and processed products that boast high phytonutrient levels and stability during thermal processing can be achieved through cultivation in conditions of low rainfall and relatively high temperatures, particularly in the three weeks leading up to harvest. Full article
(This article belongs to the Special Issue Advanced Postharvest Technology in Processed Horticultural Products)
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22 pages, 1913 KB  
Review
Advancements in the Regulation of Flavonoid Compounds in Monocotyledons and Dicotyledons by Plant MYB Transcription Factors
by Haiyan Luo, Qiong Luo, Tingting Bao, Jingtao Nie and Zhihong Sun
Horticulturae 2025, 11(10), 1244; https://doi.org/10.3390/horticulturae11101244 - 15 Oct 2025
Abstract
Flavonoids are essential secondary metabolites in plants, predominantly found in flowers, leaves, and fruits. They mainly include anthocyanins, proanthocyanidins, and flavonols. Transcription factors are a crucial family of proteins in plants, playing a significant role in regulating the biosynthesis of secondary metabolites. This [...] Read more.
Flavonoids are essential secondary metabolites in plants, predominantly found in flowers, leaves, and fruits. They mainly include anthocyanins, proanthocyanidins, and flavonols. Transcription factors are a crucial family of proteins in plants, playing a significant role in regulating the biosynthesis of secondary metabolites. This review introduces flavonoids and explores the characteristics and biological functions of MYB transcription factors. It establishes a phylogenetic tree using Arabidopsis thaliana MYB transcription factors as an example, which includes 17 subgroups (S1–S17). The subgroups related to flavonoids are primarily concentrated in S17, further classified into A, C, D, E, and F. The review also discusses the different regulatory roles of MYB transcription factors in flavonoid synthesis in monocotyledonous and dicotyledonous plants. This knowledge provides a theoretical foundation for further studies on the diverse regulatory functions of MYB transcription factors in flavonoid biosynthesis across the plant kingdom. Full article
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18 pages, 4209 KB  
Article
Physiological and Biochemical Responses of Mentha spp. to Light Spectrum and Methyl Jasmonate in a Controlled Plant Factory Environment
by Thanyaluk Dangsamer, Panita Chutimanukul, Siripong Sukdee, Theeraphat Liamjinda, Ornprapa Thepsilvisut, Hiroshi Ehara and Preuk Chutimanukul
Horticulturae 2025, 11(10), 1243; https://doi.org/10.3390/horticulturae11101243 - 15 Oct 2025
Abstract
Peppermint (Mentha spp.) produces bioactive metabolites under stress. Light spectrum and methyl jasmonate (MeJA) are important factors influencing growth, physiology, and antioxidant defense. In this study, peppermint was cultivated under different light spectra and foliar MeJA concentrations in a controlled environment. Plants [...] Read more.
Peppermint (Mentha spp.) produces bioactive metabolites under stress. Light spectrum and methyl jasmonate (MeJA) are important factors influencing growth, physiology, and antioxidant defense. In this study, peppermint was cultivated under different light spectra and foliar MeJA concentrations in a controlled environment. Plants exposed to a balanced RGB (1:1:1) spectrum showed the greatest morphological development, with plant height (35.99 cm), canopy width (21.24 cm), and chlorophyll content (29.64 SPAD) significantly higher than those in other treatments. Foliar application of MeJA produced concentration-dependent effects: 2.0 mM increased photosynthetic rate to 6.49 µmol m−2 s−1 compared with 4.52 µmol m−2 s−1 in the control, 2.5 mM resulted in the highest fresh and dry biomass (24.82 g/plant and 2.42 g/plant, respectively), and 1.5 mM yielded the highest total phenolics (20.22 mg GAE/g DW) and antioxidant activity (60.97%). These findings demonstrate that peppermint responses to MeJA are strongly dose dependent and that light quality modulates growth by reducing stress compared with monochromatic spectra. Overall, the results suggest that integrating balanced light spectra with optimized MeJA concentrations can improve both biomass and secondary metabolite accumulation, supporting peppermint production under controlled conditions. Full article
(This article belongs to the Section Protected Culture)
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20 pages, 4614 KB  
Article
Foliar Selenium Application During Flowering and Fruiting Alleviates Drought-Induced Oxidative Damage and Promotes Tomato Growth
by Haixue Cui, Yuan Zhong, Huanhuan Li, Xiaoman Qiang, Lijian Sun, Fukui Gao, Gang Wang and Hao Liu
Horticulturae 2025, 11(10), 1242; https://doi.org/10.3390/horticulturae11101242 - 14 Oct 2025
Abstract
Drought stress induced by climate change is a major limiting factor for crop growth. Selenium (Se) is recognized as an important exogenous regulator that can mitigate drought and other abiotic stresses, but the effects of Se application at different growth stages remain unclear. [...] Read more.
Drought stress induced by climate change is a major limiting factor for crop growth. Selenium (Se) is recognized as an important exogenous regulator that can mitigate drought and other abiotic stresses, but the effects of Se application at different growth stages remain unclear. In this study, greenhouse-grown tomato plants were subjected to four Se treatments (T1: control; T2: Se at seedling stage; T3: Se at flowering stage; T4: Se at both stages) combined with three irrigation regimes (W1: 50–55%, W2: 65–70%, W3: 80–85% of field capacity). The impacts of Se timing on antioxidant enzymes, osmotic regulators, and growth parameters were evaluated. Drought stress induced oxidative damage, reduced photosynthesis, and inhibited biomass accumulation, while proline content increased with drought severity. Se application showed clear growth-stage specificity: under mild stress, Se at the flowering stage most effectively enhanced antioxidant activity, regulated proline metabolism, improved photosynthetic performance, and promoted growth. Dual-stage application did not provide additional benefits. These findings indicate that applying Se during the flowering and fruiting stage is optimal for alleviating drought-induced growth inhibition in tomato. The results contribute to understanding Se-mediated drought tolerance and may support the development of stage-specific Se fertilizer management strategies. Full article
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15 pages, 1900 KB  
Review
Gray Mold in Blueberry: Current Research on Pathogenesis, Host Resistance, and Control Strategies
by Lifeng Xiao, Qiuyue Zhao, Jie Deng, Lingyan Cui, Tingting Zhang, Qin Yang and Sifeng Zhao
Horticulturae 2025, 11(10), 1241; https://doi.org/10.3390/horticulturae11101241 - 14 Oct 2025
Abstract
Gray mold, caused by Botrytis cinerea, poses a significant fungal threat to postharvest blueberries, leading to substantial economic losses and challenging the sustainable development of the blueberry industry. This highlights the urgent necessity for comprehensive research to develop effective and sustainable management [...] Read more.
Gray mold, caused by Botrytis cinerea, poses a significant fungal threat to postharvest blueberries, leading to substantial economic losses and challenging the sustainable development of the blueberry industry. This highlights the urgent necessity for comprehensive research to develop effective and sustainable management solutions. This review offers a systematic overview of gray mold in blueberries, with a particular emphasis on elucidating the pathological mechanisms employed by B. cinerea, including its infection pathways and virulence factors. It examines the resistance mechanisms in blueberries, which include both preformed and induced physical and biochemical defenses, and synthesizes existing control strategies. These strategies range from conventional fungicides to emerging alternatives such as biological control agents, natural antimicrobials, physical treatments, and integrated pest management (IPM) approaches. Furthermore, the paper explores future research directions by identifying key knowledge gaps and promising areas for innovation. This study aims to bridge the gap between fundamental knowledge and practical application, thereby providing a robust theoretical foundation and actionable guidance for the effective prevention and management of gray mold in blueberry production and storage. Full article
(This article belongs to the Section Plant Pathology and Disease Management (PPDM))
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18 pages, 7685 KB  
Article
Complete Chloroplast Genome of Hygrophila polysperma (Acanthaceae): Insights into Its Genetic Features and Phylogenetic Relationships
by Li-Xuan Chin, Qiurui Huang, Qinglang Fan, Haibo Tan, Yuping Li, Caixia Peng, Yunfei Deng and Yongqing Li
Horticulturae 2025, 11(10), 1240; https://doi.org/10.3390/horticulturae11101240 - 14 Oct 2025
Viewed by 95
Abstract
Hygrophila polysperma is a type of amphibious plant that originates from Acanthaceae. Here, we report its first complete chloroplast (cp) genome. The complete cp genome is 146,675 bp in length with 38.3% of GC content. There are 130 genes including 86 protein coding [...] Read more.
Hygrophila polysperma is a type of amphibious plant that originates from Acanthaceae. Here, we report its first complete chloroplast (cp) genome. The complete cp genome is 146,675 bp in length with 38.3% of GC content. There are 130 genes including 86 protein coding genes, 36 tRNA genes, and 8 rRNA genes in this genome. Simple short sequence (SSR) analysis found 30 SSRs, 24 of which are located in a large single-copy region. Nucleotide diversity identified six most divergent sequences (trns-GCU, psaA-pafI, psaI-pafII, ycf2, rpl32, and ycf1) among 3 close-related species, H. polysperma, H. ringens, and Asteracantha longifolia. A phylogenetic tree among H. polysperma and another 30 related species was constructed based on the common coding sequence of the cp genome and showed that H. polysperma is most closely related to H. ringens (both belong to subtribe Hygrophilinae) and, together, they form a clade that is sister to A. longifolia. This study provides a basis for systemic and evolution studies as well as the development of molecular markers for species identification and genetic breeding. Full article
(This article belongs to the Special Issue Horticultural Plant Genomics and Quantitative Genetics)
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17 pages, 8994 KB  
Article
Nutritional Composition, Bioactive Components and Antioxidant Activity of Garden Cress (Lepidium sativum L.) Grown Under Deficit Irrigation
by Ertan Yildirim, Melek Ekinci, Metin Turan, Hamza Goktas, Derya Nil Budak and Osman Sagdic
Horticulturae 2025, 11(10), 1239; https://doi.org/10.3390/horticulturae11101239 - 14 Oct 2025
Viewed by 64
Abstract
This study examined how different water restriction levels (T100%, T85%, T75%, and T55%) influence the nutritional and bioactive compounds of Bahar and Dadaş cress (Lepidium sativum L.) cultivars. The highest levels of phenolic compounds found in Dadaş and Bahar cress were quercetin [...] Read more.
This study examined how different water restriction levels (T100%, T85%, T75%, and T55%) influence the nutritional and bioactive compounds of Bahar and Dadaş cress (Lepidium sativum L.) cultivars. The highest levels of phenolic compounds found in Dadaş and Bahar cress were quercetin (8.33 ± 0.23–9.32 ± 0.25 µg/L), ferulic acid (8.08 ± 0.18–8.42 ± 0.19 µg/L), catechin (6.83 ± 0.28 µg/L), and caftaric acid (5.40 ± 0.45 µg/L). Mild and moderate drought treatments (85% and 75% humidity) caused notable increases in phenolic compounds. The highest antioxidant enzyme levels were observed as GST, 6GPD, and G6PD in Bahar and Dadaş cress, with enzyme levels rising under drought conditions. Notably, the mild drought treatment roughly doubled peonidin-3-glucoside acetyl levels in the cress cultivars. Sugar contents of Dadaş and Bahar cress cultivars also rose significantly with drought treatment. Riboflavin, the most abundant vitamin in cress cultivars, increased to 40.96 ± 1.24 mg/kg in Dadaş and 30.79 ± 1.60 mg/kg in Bahar cress under drought stress. Amino acids showed the highest increases under severe drought, with asparagine rising by roughly 2.76-fold and leucine increasing by 2.67-fold in Bahar cress. These findings suggest that controlled water restriction can enhance the nutritional and bioactive properties of cress, potentially leading to more nutrient-rich products for the food industry and human health. Full article
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21 pages, 7305 KB  
Article
Integration of Physiological and Transcriptomic Analyses Provides Insights into the Regulatory Mechanisms of Adventitious Root Formation in Phoebe bournei Cuttings
by Yuhua Li, Haining Xu, Yongjie Zheng, Chenglin Luo, Yueting Zhang, Xinliang Liu and Yanfang Wu
Horticulturae 2025, 11(10), 1238; https://doi.org/10.3390/horticulturae11101238 - 13 Oct 2025
Viewed by 152
Abstract
Phoebe bournei is an important economic tree species in China, its large-scale propagation is limited by the difficulty of adventitious root (AR) formation in cuttings. In this study, morphological, physiological, and transcriptomic analyses were conducted to investigate the process of AR formation in [...] Read more.
Phoebe bournei is an important economic tree species in China, its large-scale propagation is limited by the difficulty of adventitious root (AR) formation in cuttings. In this study, morphological, physiological, and transcriptomic analyses were conducted to investigate the process of AR formation in P. bournei. The results showed that ARs mainly originated from callus tissue. During AR formation, soluble sugar and soluble protein contents changed significantly. Malondialdehyde (MDA) and oxygen free radicals (OFRs) peaked at first sampling stage (PB0), while the activities of polyphenol oxidase (PPO) and indoleacetic acid oxidase (IAAO) exhibited similar patterns. Lignin content increased during callus induction stage, whereas phenolic content continuously declined throughout rooting. Endogenous hormone levels also changed markedly, and Orthogonal partial least squares discriminant analysis (OPLS-DA) analysis indicated that indole-3-acetic acid (IAA) and abscisic acid (ABA) played dominant roles in this process. KEGG enrichment analysis revealed significant enrichment of the phenylpropanoid biosynthesis pathway in all three comparison groups. A total of 48 differentially expressed genes (DEGs) were enriched in plant hormone signal transduction pathways, with 22 and 14 genes associated with IAA and ABA signaling, respectively. Weighted gene co-expression network analysis (WGCNA) further identified two hub modules related to IAA and ABA contents, including eight hub genes such as D6PKL1 and ISTL1. Correlation analysis revealed that the hub genes D6PKL1 and HSP were significantly positively correlated with IAA4 in the IAA signaling pathway. Overall, this study provides new insights into the mechanisms underlying AR formation in P. bournei cuttings and offers a theoretical basis for optimizing its clonal propagation system. Full article
(This article belongs to the Section Propagation and Seeds)
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14 pages, 3014 KB  
Article
Responses of Growth and Secondary Metabolites in Fish Mint (Houttuynia cordata Thunb.) Cuttings to Far-Red Light
by Zi-Yi Wang, Kuan-Hung Lin, Yen-Chi Yin and Chang-Chang Chen
Horticulturae 2025, 11(10), 1237; https://doi.org/10.3390/horticulturae11101237 - 13 Oct 2025
Viewed by 115
Abstract
Fish mint (Houttuynia cordata Thunb.) is an aromatic herb used as food and medicine across Asia. We evaluated how far-red (FR) light influences growth and secondary metabolites in the non-flowering cultivar ‘BCV02’ propagated by cuttings. Seedlings were grown for 14 days under [...] Read more.
Fish mint (Houttuynia cordata Thunb.) is an aromatic herb used as food and medicine across Asia. We evaluated how far-red (FR) light influences growth and secondary metabolites in the non-flowering cultivar ‘BCV02’ propagated by cuttings. Seedlings were grown for 14 days under FR at 35, 50, and 70 μmol m−2 s−1 (as FR35, 50, and 70, respectively) or without FR (as control, CK). All FR treatments increased plant height but reduced the shoot/rhizome ratio. Total chlorophyll and carotenoid contents were unchanged, while the chlorophyll a/b ratio declined from 2.37 (CK) to 2.15 (FR70). In shoots, combined 3-, 4-, and 5-O-caffeoylquinic acids with rutin, hyperoside, isoquercitrin, and quercitrin reached 12.61–13.83 mg g−1 dry weight (DW) under FR treatments, exceeding CK (8.48 mg g−1 DW). However, in rhizomes, these secondary metabolite contents ranged 0.82–1.00 mg g−1 DW across all treatments. On a per-pot basis, the highest accumulated compounds (4.37 mg per pot) occurred at FR35. Overall, growth and secondary metabolite biosynthesis in fish mint cuttings respond differently to changes in FR treatments, with FR35 optimizing compound accumulation. Quercitrin in shoots was 0.09–0.20 mg g−1 DW and not quantifiable in rhizomes, potentially below pharmacopeial thresholds specified in the Taiwan Herbal Pharmacopeia and Hong Kong Chinese Materia Medica Standards. These results underscore the importance of aligning cultivar choice, light regime, and market specifications to secure both yield and quality of H. cordata. Full article
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21 pages, 3081 KB  
Article
Lightweight CNN–Transformer Hybrid Network with Contrastive Learning for Few-Shot Noxious Weed Recognition
by Ruiheng Li, Boda Yu, Boming Zhang, Hongtao Ma, Yihan Qin, Xinyang Lv and Shuo Yan
Horticulturae 2025, 11(10), 1236; https://doi.org/10.3390/horticulturae11101236 - 13 Oct 2025
Viewed by 109
Abstract
In resource-constrained edge agricultural environments, the accurate recognition of toxic weeds poses dual challenges related to model lightweight design and the few-shot generalization capability. To address these challenges, a multi-strategy recognition framework is proposed, which integrates a lightweight backbone network, a pseudo-labeling guidance [...] Read more.
In resource-constrained edge agricultural environments, the accurate recognition of toxic weeds poses dual challenges related to model lightweight design and the few-shot generalization capability. To address these challenges, a multi-strategy recognition framework is proposed, which integrates a lightweight backbone network, a pseudo-labeling guidance mechanism, and a contrastive boundary enhancement module. This approach is designed to improve deployment efficiency on low-power devices while ensuring high accuracy in identifying rare toxic weed categories. The proposed model achieves a real-time inference speed of 18.9 FPS on the Jetson Nano platform, with a compact model size of 18.6 MB and power consumption maintained below 5.1 W, demonstrating its efficiency for edge deployment. In standard classification tasks, the model attains 89.64%, 87.91%, 88.76%, and 88.43% in terms of precision, recall, F1-score, and accuracy, respectively, outperforming existing mainstream lightweight models such as ResNet18, MobileNetV2, and MobileViT across all evaluation metrics. In few-shot classification tasks targeting rare toxic weed species, the complete model achieves an accuracy of 80.32%, marking an average improvement of over 13 percentage points compared to ablation variants that exclude pseudo-labeling and self-supervised modules or adopt a CNN-only architecture. The experimental results indicate that the proposed model not only delivers strong overall classification performance but also exhibits superior adaptability for deployment and robustness in low-data regimes, offering an effective solution for the precise identification and ecological control of toxic weeds within intelligent agricultural perception systems. Full article
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35 pages, 6909 KB  
Article
Contribution of Artificial Neural Networks (ANNs) in Analyzing and Modeling Phenological Synchronization of Fig and Caprifig in Northern Morocco
by Abdelhalim Chmarkhi, Salama El Fatehi, Imane Mehdi, Widad Benziane, Nouhaila Dihaz, Khaoula El Khatib, Aliki Kapazoglou and Younes Hmimsa
Horticulturae 2025, 11(10), 1235; https://doi.org/10.3390/horticulturae11101235 - 13 Oct 2025
Viewed by 89
Abstract
The Mediterranean fig (Ficus carica L.) is a dioecious fruit tree of high nutritional and economic value in the Mediterranean basin. In northern Morocco, phenological desynchronization between male and female fig trees limits pollination and production. This study aimed to characterize the [...] Read more.
The Mediterranean fig (Ficus carica L.) is a dioecious fruit tree of high nutritional and economic value in the Mediterranean basin. In northern Morocco, phenological desynchronization between male and female fig trees limits pollination and production. This study aimed to characterize the phenological stages of indigenous fig and caprifig varieties using the BBCH scale and to evaluate the predictive capacity of artificial neural networks (ANNs). This study was conducted in the Bni Ahmed region over two consecutive years (2021 and 2022) at two sites. At each site, a total of 80 female fig trees were selected. Caprifig trees were selected in accordance with their availability (37 trees/site 1; 24 trees/site 2). Local meteorological data were incorporated into the analysis to evaluate the influence of climatic conditions on phenological stages. Our results revealed significant effects of temperature, humidity, and rainfall on phenological dynamics, along with a clear inter-varietal variability and pronounced desynchronization between male and female fig trees. Early-ripening caprifig varieties showed limited pollination efficiency, whereas late-ripening varieties were better synchronized with the longer receptivity period of female fig trees. Importantly, the ANN model demonstrated exceptional predictive performance (R2 up to 0.985, RMSE < 1 day), serving as a robust and practical tool for forecasting key phenological stages and minimizing potential yield losses. These findings demonstrate the value of combining phenological monitoring with AI-based modeling to improve adaptive management of fig orchards under Mediterranean climate change. This is the first study in Morocco to implement such an integrated approach to fig and caprifig trees. Full article
(This article belongs to the Section Fruit Production Systems)
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18 pages, 2387 KB  
Article
Comparative Proteomic Analysis Provides Insight into the Effect of Monochromatic Light Wavelength on Metabolic Pathways Regulation of the Edible Mushroom Pleurotus ostreatus Grown in Submerged Fermentation
by Georgios Bakratsas, Martina Samiotaki, Renia Fotiadou, Haralambos Stamatis and Petros Katapodis
Horticulturae 2025, 11(10), 1234; https://doi.org/10.3390/horticulturae11101234 - 13 Oct 2025
Viewed by 127
Abstract
Light plays an essential role in regulating the growth, development, and metabolic activities of the edible mushroom Pleurotus ostreatus. In this research, the influence of white, blue, green, yellow, and red light, and darkness, on the global protein expression of P. ostreatus [...] Read more.
Light plays an essential role in regulating the growth, development, and metabolic activities of the edible mushroom Pleurotus ostreatus. In this research, the influence of white, blue, green, yellow, and red light, and darkness, on the global protein expression of P. ostreatus LGAM 1123 grown in submerged culture was explored. The growth of the fungus was not inhibited by light in any of the conditions tested compared with the dark. However, the mycelial protein content was reduced by 10% under blue and white light. Proteomic analysis revealed distinct proteomes for each light wavelength, with red and blue light presenting the most distinctive proteome profiles. (Data are available via ProteomeXchange with identifier PXD065402.) Blue light activates pathways such as the citrate cycle (TCA cycle), glycolysis/gluconeogenesis, and amino acid biosynthesis, while red light stimulates mRNA-related pathways. GC-MS analysis of the biomass revealed differences in the amino acids, sugars, and lipids produced. The distinct regulation of proteins and bioactive compounds under different light wavelengths suggests that specific wavelengths can direct the metabolism of P. ostreatus into biochemical pathways. These strategies could be beneficial for the food industry because particular nutrients can be increased during the fermentation of edible fungi without the need for genetic engineering of the strain. Full article
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15 pages, 6559 KB  
Article
Chilling-Induced Metabolic Shifts and Flavor Changes in Dendrobium officinale Leaves
by Xinqiao Zhan, Jun Yang and Bizeng Mao
Horticulturae 2025, 11(10), 1233; https://doi.org/10.3390/horticulturae11101233 - 13 Oct 2025
Viewed by 133
Abstract
Refrigeration has become a common practice for preserving Dendrobium officinale products. The molecular mechanisms underlying chilling stress responses, particularly those linking physiological adaptation to flavor-related metabolite changes, remain unclear. This study aimed to explore the transcriptional and metabolic changes in D. officinale leaves [...] Read more.
Refrigeration has become a common practice for preserving Dendrobium officinale products. The molecular mechanisms underlying chilling stress responses, particularly those linking physiological adaptation to flavor-related metabolite changes, remain unclear. This study aimed to explore the transcriptional and metabolic changes in D. officinale leaves during cold treatment and to identify key stress-responsive metabolites underlying flavor modulation and their roles in cold adaptation. Transcriptional clustering analysis revealed distinct expression profiles under varying temperatures, indicating that chilling temperatures affect pathways related to RNA processing, oxidative stress, and secondary metabolism. Metabolomics profiling demonstrated significant metabolite shifts over time, with lipids, organic acids, and phenylpropanoids being prominently altered. Notably, flavonoids like rutin and sugars like trehalose varied in their accumulation depending on the duration of cold exposure. Proteomic analysis indicated that proteins involved in amino acid metabolism and the TCA (tricarboxylic acid) cycle were significantly impacted by prolonged chilling, with amino acids (key osmoprotectants and flavor contributors) accumulating over time, linking cold stress adaptation to sensory quality enhancement. These findings suggest that a chilling temperature primarily affects metabolic flow at different time points, which could help control the quality of D. officinale leaves during cold storage. Full article
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16 pages, 986 KB  
Article
Control of Neopestalotiopsis zimbabwana Using Origanum vulgare L. Essential Oil: Combined In Vitro, In Vivo and In Silico Approaches
by Héctor Gómez-Yáñez, Ramón Marcos Soto-Hernández, Lucero del Mar Ruiz-Posadas, Guadalupe Valdovinos-Ponce, Irving Israel Ruiz-López, Cecilia Beatriz Peña-Valdivia and Guadalupe Mora-Báez
Horticulturae 2025, 11(10), 1232; https://doi.org/10.3390/horticulturae11101232 - 13 Oct 2025
Viewed by 154
Abstract
Neopestalotiopsis zimbabwana is an emerging phytopathogen with multiple hosts. Considering the environmental, toxicological, and resistance issues linked to synthetic fungicides, Origanum vulgare L. essential oil (OEO) was evaluated through in vitro, in vivo, and in silico approaches. The pathogen, isolated from [...] Read more.
Neopestalotiopsis zimbabwana is an emerging phytopathogen with multiple hosts. Considering the environmental, toxicological, and resistance issues linked to synthetic fungicides, Origanum vulgare L. essential oil (OEO) was evaluated through in vitro, in vivo, and in silico approaches. The pathogen, isolated from Watsonia borbonica L., was molecularly identified. Gas chromatography–mass spectrometry (GC–MS) analysis showed hexadecanoic acid (15.98%), dodecanoic acid (15.74%), terpinen-4-ol (11.61%), and thymol (7.65%) as the main components. In vitro assays determined a minimum inhibitory concentration (MIC) of 30% OEO and a minimal fungicidal concentration (MFC) of 60% OEO. Growth chamber trials demonstrated that preventive sprays maintained 0% foliar damage—similar to Captan®—while controls reached ≈98%; suspending applications after week 4 resulted in ≈45% damage by week 8. These results confirm that OEO lacks systemic residual activity, acting only as a protectant within preventive integrated pest management (IPM) schemes. Docking to cytochrome b (protein data bank, PDB: 5TL8) indicated strong binding of α-farnesene (−7.638 kcal·mol−1), isoterpinolene (−6.944), and α-terpineol (−6.918), suggesting disruption of mitochondrial respiration via Complex III. OEO represents a promising eco-friendly alternative for managing N. zimbabwana under controlled conditions and reducing reliance on synthetic fungicides. Full article
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23 pages, 2625 KB  
Article
Mitochondrial Genome Assembly and Comparative Analysis of Three Closely Related Oaks
by Zhi-Tong Xiao, Ying Song, Lu-Ting Liu, Bo Chen, Yue Xu, Li-Jun Huang, He Li, Xiao-Long Jiang, Xiong-Sheng Liu and Min Deng
Horticulturae 2025, 11(10), 1231; https://doi.org/10.3390/horticulturae11101231 - 12 Oct 2025
Viewed by 183
Abstract
The genus Quercus is an ecological keystone and economically vital component of Northern Hemisphere forests. While genomic studies have advanced our understanding of its nuclear and chloroplast genomes, the mitochondrial genomes of oaks remain less explored due to their complex evolutionary dynamics, which [...] Read more.
The genus Quercus is an ecological keystone and economically vital component of Northern Hemisphere forests. While genomic studies have advanced our understanding of its nuclear and chloroplast genomes, the mitochondrial genomes of oaks remain less explored due to their complex evolutionary dynamics, which include extreme size variation, frequent rearrangements, and recurrent horizontal gene transfer. This study presents the assembly, annotation, and comparative analysis of mitogenomes from three closely related Asian oaks—Q. engleriana, Q. kongshanensis, and Q. tungmaiensis—using PacBio HiFi sequencing. The assemblies revealed distinct structural organizations: the Q. engleriana and Q. kongshanensis mitogenomes each comprised one circular contig and one linear contig, whereas the Q. tungmaiensis mitogenome comprised one circular contig and two linear contigs. Comparative analyses revealed variations in codon usage bias, simple sequence repeats, and predicted RNA editing sites. Notably, RNA editing in rps12 was uniquely observed in Q. kongshanensis. Mitochondrial targeting of plastid transcripts constituted 1.39%, 1.79%, and 2.24% of the mitogenomes, respectively. Phylogenetic reconstruction based on mitochondrial PCGs robustly resolved Q. kongshanensis and Q. tungmaiensis as sister species, with all three forming a distinct clade separate from other Quercus species. This study provides comprehensive mitogenomic resources essential for elucidating Quercus evolutionary biology and supporting germplasm development. Full article
(This article belongs to the Topic Plant Breeding, Genetics and Genomics, 2nd Edition)
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15 pages, 8457 KB  
Article
Transcriptomic Analysis Reveals the Impact of Interstock on Vesicle Granulation in ‘Hainan Qingyou’ Pomelo (Citrus maxima) Fruit
by Chengchao Yang, Chengkun Yang, Haibo Li and Chengdong Jiang
Horticulturae 2025, 11(10), 1230; https://doi.org/10.3390/horticulturae11101230 - 12 Oct 2025
Viewed by 261
Abstract
‘Hainan Qingyou’ (Citrus maxima) Pomelo is one of the predominant local cultivars cultivated in Hainan Province, renowned for its high economic value and strong market competitiveness. However, during cultivation, it was observed that the fruit quality of ‘Hainan Qingyou’ grafted onto [...] Read more.
‘Hainan Qingyou’ (Citrus maxima) Pomelo is one of the predominant local cultivars cultivated in Hainan Province, renowned for its high economic value and strong market competitiveness. However, during cultivation, it was observed that the fruit quality of ‘Hainan Qingyou’ grafted onto a ‘Sanhong’ interstock deteriorated, predominantly manifesting as vesicle granulation. This study was therefore conducted to investigate this phenomenon using ‘Sanhong’ Honey Pomelo as the interstock. Fruit quality indicators were measured, and pulp transcriptomic analysis was performed during the expansion and maturation stages. The results indicated that fruits grafted onto ‘Sanhong’ interstock (SHZ) exhibited increased peel thickness, yellower peel, reduced edible rate, higher pulp firmness, decreased total soluble solids (TSS), increased total acid content, and reduced total antioxidant capacity at maturity, all contributing to diminished fruit quality. Additionally, SHZ fruit accumulated higher lignin content in the pulp, leading to vesicle granulation, which severely compromised marketability. Transcriptomic analysis identified 42 structural genes involved in lignin biosynthesis in ‘Hainan Qingyou’ pulp, including 5 PAL, 2 C4H, 2 4CL, 6 CAD, 15 PER, 2 HCT, 1 C3′H, 1 CCoAOMT, 1 CCR, 1 COMT, 2 CSE, and 1 F5H genes. Most of these genes were highly expressed in SHZ fruit at maturity, with expression levels significantly higher than those in fruit grafted onto ‘Hainan Qingyou’ interstock (QYZ). The interstock also affected hormone signaling pathways. Weighted gene co-expression network analysis (WGCNA) identified transcription factors such as MYB, MIKC, ERF, and bZIP as key regulators involved in pulp lignin biosynthesis. This study provides insights into the effects of rootstocks on citrus fruit quality and offers valuable information for cultivar improvement in pomelo orchards. Full article
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14 pages, 2718 KB  
Article
Comprehensive Identification and Expression Profiling of the NAC Family During Female Cone Development in Torreya grandis
by Long Wang, Chang Chen, Meiying Liu, Wenfei Bi, Su Li, Xiong Zhang and Tong Han
Horticulturae 2025, 11(10), 1229; https://doi.org/10.3390/horticulturae11101229 - 11 Oct 2025
Viewed by 266
Abstract
NAC transcription factors are key regulators involved in diverse cellular processes, stress responses, and developmental pathways in plants. However, their roles in female cone development of Torreya grandis, a representative gymnosperm species, remain largely unexplored. In this study, we performed a comprehensive [...] Read more.
NAC transcription factors are key regulators involved in diverse cellular processes, stress responses, and developmental pathways in plants. However, their roles in female cone development of Torreya grandis, a representative gymnosperm species, remain largely unexplored. In this study, we performed a comprehensive identification and analysis of NAC transcription factors in T. grandis to investigate their potential functions in female cone development. A total of 82 TgNAC members containing conserved NAM domains were identified, distributed unevenly across 11 chromosomes. Phylogenetic analysis with Arabidopsis NACs classified them into 15 groups, with TgNACs represented in 10 groups and showing a notable enrichment in the TERN clade on chromosome 2. Promoter cis-element analysis revealed correlations between regulatory elements and expression patterns. Tissue-specific expression profiling indicated clear functional specialization, with some TgNACs showing no detectable expression in the examined tissues. During female cone development, several TgNACs were highly expressed in the early stages, whereas TgNAC72, TgNAC76 and TgNAC82 were upregulated during the latter stages. Among these, TgNAC72 exhibited the highest overall expression level. Subcellular localization confirmed TgNAC72 is localized in the nucleus. Dual-luciferase assays further demonstrated that TgNAC72 activates the TgBGLU13 promoter, suggesting its role in starch and sucrose metabolism. Collectively, these findings provide novel insights into the regulatory involvement of TgNACs in reproductive organ development. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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22 pages, 4812 KB  
Article
Physiological, Productive, and Nutritional Performance of Tomato Plants Treated with Iron and Zinc Nanoparticles via Foliar Application Under Deficit Irrigation
by Erika Caminha Almeida, Francisco Hevilásio Freire Pereira, Kaiki Nogueira Ferreira, Antonio Carlos de Sena Rodrigues, Railene Hérica Carlos Rocha Araújo, José Ebson Janoca de Souza, Carlos Sávio Gomes Ramos, Guilherme Lopes, Leônidas Canuto dos Santos, Francisco Bezerra Neto, Francisco Vaniés da Silva Sá, José Zilton Lopes Santos, Ronaldo do Nascimento and Josinaldo Lopes Araujo Rocha
Horticulturae 2025, 11(10), 1228; https://doi.org/10.3390/horticulturae11101228 - 11 Oct 2025
Viewed by 302
Abstract
Water deficit in the semi-arid region of Brazil is a critical limiting factor for tomato (Solanum lycopersicum Mill.), plant development and productivity. We evaluated whether foliar zinc (ZnO NPs) and iron (Fe2O3NPs) nano-oxides and their conventional salts (ZnSO [...] Read more.
Water deficit in the semi-arid region of Brazil is a critical limiting factor for tomato (Solanum lycopersicum Mill.), plant development and productivity. We evaluated whether foliar zinc (ZnO NPs) and iron (Fe2O3NPs) nano-oxides and their conventional salts (ZnSO4·7H2O and FeSO4·7H2O) mitigate water deficit effects on tomato (hybrid HM 2798). A split-plot field experiment was conducted with two irrigation levels (50% and 100% ETc) and five foliar treatments: control (no application), FeSO4·7H2O (T1), Fe2O3NPs (T2), ZnONPs (T3), ZnSO4·7H2O (T4), with four replications, totaling 40 experimental plots (2 irrigation levels × 5 foliar treatments × 4 replicates). The water deficit significantly reduced the leaf area index, photosynthetic rate, membrane stability, calcium and boron contents in fruits, and total and marketable yield. Foliar application of iron and zinc nano-oxides and their conventional sources had a limited effect on tomato plant growth but increased the photosynthetic rate under both irrigation levels. Under full irrigation, ZnSO4·7H2O increased total fruit production by 61% and fruit Zn content by 18.1%. In turn, Fe2O3 NPs (T2) led increases in fruit iron content by 117.3% under water deficit and 135.2% under full irrigation. Foliar application of Fe as Fe2O3 NPs is promising to promote the biofortification of tomato fruits with this micronutrient, especially in regions with deficiency problems of this micronutrient. Full article
(This article belongs to the Special Issue Advances in Sustainable Cultivation of Horticultural Crops)
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19 pages, 13272 KB  
Article
The MADS-Box Transcription Factor BoAGL8 Is Involved in Regulating Flowering in Broccoli
by Yuanyuan Li, Hanbing Yang, Peini Jia, Zairong Li, Yan Wang, Yajie Jiang, Xia He, Boyue Wen, Chensi Huo, Wei Zhang, Wenchen Chai, Shijiang Yan and Jing Zhang
Horticulturae 2025, 11(10), 1227; https://doi.org/10.3390/horticulturae11101227 - 11 Oct 2025
Viewed by 301
Abstract
Broccoli (Brassica oleracea L. var. italica) is a biennial or annual herbaceous plant belonging to the species Brassica oleracea in the genus Brassica of the Cruciferae family. The green flower curd serves as the primary edible organ, with its development and [...] Read more.
Broccoli (Brassica oleracea L. var. italica) is a biennial or annual herbaceous plant belonging to the species Brassica oleracea in the genus Brassica of the Cruciferae family. The green flower curd serves as the primary edible organ, with its development and preservation critically determining broccoli yield and quality. Given that these processes are regulated by flowering time, understanding the mechanisms underlying floral transition is essential for enhancing broccoli yield and quality. This study aimed to identify the MADS-box family in broccoli and to investigate the function of the BoAGL8 gene in floral induction. We identified a total of 176 MADS-box genes, of which 54 genes were up-regulated and 50 genes were down-regulated under low-temperature treatment. Notably, the expression of BoAGL8 was up-regulated by 6.70-fold under low-temperature induction, prompting us to select and clone this gene for further analysis. Tissue-specific expression profiling further revealed that BoAGL8 is expressed at relatively high level in both mature and young leaves. After 15 days of low-temperature treatment, BoAGL8 expression in shoot tip was significantly upregulated compared to untreated controls. Subcellular localization analysis showed that BoAGL8 protein was located to the nucleus. Ectopic over-expression of BoAGL8 in Arabidopsis exhibited accelerated bolting and flowering, reduced rosette leaf number, and increased seed yield per plant compared to wild-type plants. Furthermore, compared to wild-type controls, transgenic lines exhibited upregulated expression of AtFT, AtAP1 and AtSEP3, alongside downregulation of SVP expression. The above results indicate that BoAGL8 may play a key regulatory role in the process of floral organ development in broccoli, providing an important theoretical basis for future research on flowering time regulation and breeding in broccoli. Full article
(This article belongs to the Topic Genetic Breeding and Biotechnology of Garden Plants)
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16 pages, 2268 KB  
Review
Drought Tolerance Mechanisms in Grain and Vegetable Amaranthus Species: Physiological, Biochemical and Molecular Insights
by Mulisa Nkuna, Pfunzo Gavhi, Alice Mwanjiwa Kanyerere, Vivian Chigozie Ikebudu, Nzumbululo Ndou, Andrew Faro, Ibrahima Zan Doumbia, Rachel Fanelwa Ajayi, Azwimbavhi Reckson Mulidzi, Nike Lewu and Takalani Mulaudzi
Horticulturae 2025, 11(10), 1226; https://doi.org/10.3390/horticulturae11101226 - 11 Oct 2025
Viewed by 328
Abstract
Drought limits plant growth, development and productivity, leading to more than 50% crop loss globally. Drought-induced oxidative stress disturbs the plant’s metabolism; however, plants activate signaling pathways to respond and adapt to drought stress. Although drought response mechanisms are well reported in several [...] Read more.
Drought limits plant growth, development and productivity, leading to more than 50% crop loss globally. Drought-induced oxidative stress disturbs the plant’s metabolism; however, plants activate signaling pathways to respond and adapt to drought stress. Although drought response mechanisms are well reported in several crops, these mechanisms are poorly understood in Amaranthus. As a highly nutritious crop, rich in antioxidants with the ability to survive in extreme agro-climatic environments, Amaranthus has the potential to serve as a climate-smart future crop. This review provides evidence of some drought response traits in grain and vegetable Amaranthus species. Grain amaranths are the most tolerant species, mainly through improved osmoregulation, antioxidant capacity, and gene expression. While biomass partitioning, efficient water use, and membrane stability have been reported in both grain and vegetable amaranth, the molecular response of vegetable amaranth remains limited. Thus, future research must focus on integrated biochemical, molecular, and multi-omics applications to screen and identify resilient Amaranthus genotypes under drought for sustainable agriculture. Full article
(This article belongs to the Special Issue Responses to Abiotic Stresses in Horticultural Crops—2nd Edition)
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23 pages, 26777 KB  
Article
MSHLB-DETR: Transformer-Based Multi-Scale Citrus Huanglongbing Detection in Orchards with Aggregation Enhancement
by Zhongbin Liu, Dasheng Wu, Fengya Xu, Zengjie Du, Ruikang Luo and Cheng Li
Horticulturae 2025, 11(10), 1225; https://doi.org/10.3390/horticulturae11101225 - 11 Oct 2025
Viewed by 275
Abstract
Detecting citrus Huanglongbing (HLB) in orchard environments is particularly challenging due to multi-scale targets and occlusions due to clustering, which manifest as complex and variable backgrounds, targets ranging from distant single leaves to nearby full canopies, and frequent instances where symptomatic leaves are [...] Read more.
Detecting citrus Huanglongbing (HLB) in orchard environments is particularly challenging due to multi-scale targets and occlusions due to clustering, which manifest as complex and variable backgrounds, targets ranging from distant single leaves to nearby full canopies, and frequent instances where symptomatic leaves are hidden behind others, all significantly hindering accurate detection. To overcome these challenges, this study introduces a novel citrus object detection model, Multi-Scale Huanglongbing DETR (MSHLB-DETR), developed on the basis of an improved Real-Time DEtection TRansformer (RT-DETR). The model significantly enhances detection accuracy and efficiency for HLB under complex orchard conditions. To address the issue of small target feature loss in leaf detection, a new efficient transformer module called Smart Disease Recognition for Citrus Huanglongbing with Multi-scale (SDRM) is introduced. SDRM includes a space-to-depth (SPD) module and inverted residual mobile block (IRMB), which facilitate deep interaction between local and global features and significantly improve the computational efficiency of the transformer. Additionally, the transformer encoder incorporates a Context-Guided Block (CGBlock) for contextual feature learning. To evaluate the proposed model under complex background conditions, a dataset of 4367 images was collected from diverse orchard scenes, preprocessed, and divided into training, validation, and testing subsets. The experimental results demonstrate that the proposed MSHLB-DETR achieved the best detection performance on the test set, with an mAP50 of 96.0%, surpassing other state-of-the-art models of similar scale. Compared to the original RT-DETR, the proposed model increased mAP50 by 15.8%, reduced Params by 7.5%, and decreased GFLOPs by 5.2%. This study reveals the critical importance of developing efficient multi-scale detection techniques for the accurate identification of citrus Huanglongbing in complex real-time monitoring scenarios. The proposed algorithm is expected to provide valuable references and new insights for the precise and timely detection of citrus Huanglongbing. Full article
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14 pages, 2466 KB  
Article
Construction of SNP-PARMS Fingerprints and Analysis of Genetic Diversity in Taro (Colocasia esculenta)
by Shuanghua Wu, Tianxin Chen, Qian Li, Xin Wang, Jianguo Yang and Duanhua Wang
Horticulturae 2025, 11(10), 1224; https://doi.org/10.3390/horticulturae11101224 - 11 Oct 2025
Viewed by 187
Abstract
Taro (Colocasia esculenta) is the fifth most cultivated root crop in the world. During the asexual reproduction of taro, the frequent mutation of somatic cells leads to high genetic diversity. With the continuous increase in the amount of taro germplasm resources [...] Read more.
Taro (Colocasia esculenta) is the fifth most cultivated root crop in the world. During the asexual reproduction of taro, the frequent mutation of somatic cells leads to high genetic diversity. With the continuous increase in the amount of taro germplasm resources collected, efficiently and accurately genotyping taro has become a major problem. The identification of taro resources using penta-primer amplification refractory mutation system single-nucleotide polymorphisms (SNP-PARMS) is a relatively efficient method. After resequencing 29 taro resources in this study, approximately 86.95 million SNPs were obtained. Then, 252 specific SNP loci were screened. Based on these 252 specific SNP loci, 36 pairs of PARMS-SNP markers were formed. Among them, 9 pairs of PARMS-SNP markers with a sample loss rate > 15% were eliminated, and finally 27 pairs of PARMS-SNP markers were determined. The average values of minimal allele frequency (MAF), polymorphic information content (PIC), gene diversity (GD), and heterozygosity of these markers are 0.63, 0.34, 0.49, and 0.45, respectively. We analyzed the population structure and the evolutionary group, and the results showed that the 72 taro resources could be divided into 6 groups. The clustering result of the 72 taro resources based on phenotypic traits showed a potential congruence with the result of grouping in the evolutionary tree, with only a few differences detected between the two classifications. Using these markers, DNA fingerprint maps of 72 taro resources were constructed, and all taro resources were differentiated. Some resources show potential similarities in DNA fingerprint maps, as well is in their phenotypic traits, confirming the validity of the fingerprint. The study’s findings serve as a reference for the analysis of the genetic diversity of taro resources. Full article
(This article belongs to the Special Issue Breeding by Design: Advances in Vegetables)
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20 pages, 4256 KB  
Article
UAV Multispectral Data Combined with the PROSAIL Model Using the Adjusted Average Leaf Angle for the Prediction of Canopy Chlorophyll Content in Citrus Fruit Trees
by Shiqing Dou, Yichang Hou, Rongbin Wang, Minglan Li, Shixin Yuan, Zhengmin Mei, Yaqin Song and Jichi Yan
Horticulturae 2025, 11(10), 1223; https://doi.org/10.3390/horticulturae11101223 - 11 Oct 2025
Viewed by 197
Abstract
Canopy chlorophyll content (CCC) is an important index for monitoring the growth and estimating the productivity of citrus fruit trees. This study optimized the PROSAIL model by adjusting the average leaf angle (ALA) parameter. A hybrid inversion model was then developed by combining [...] Read more.
Canopy chlorophyll content (CCC) is an important index for monitoring the growth and estimating the productivity of citrus fruit trees. This study optimized the PROSAIL model by adjusting the average leaf angle (ALA) parameter. A hybrid inversion model was then developed by combining the simulated data with UAV multispectral measurements using machine learning to determine the optimal data fusion ratio for improved citrus CCC prediction. The results show that (1) the most pragmatic accommodation for the hybrid inversion model in this study is the 1:4 ratio of measured data to simulated data; (2) the adjusted ALA (ALAadj) value of citrus fruit trees is 42°, and the spectral response region of the adjusted PROSAIL parameters is more conducive to leaf chlorophyll content (LCC) and the leaf area index (LAI) for CCC modeling; and (3) the ALAadj hybrid inversion model showed significantly better performance than the ALA-unadjusted model under all four machine learning methods, with the peak prediction accuracy, measured by R2, rising from 0.723 to 0.823—a 13.8% increase. The proposed method effectively improves the prediction accuracy of citrus CCCs, demonstrating the strong potential of the ALAadj-based PROSAIL model for UAV-scale CCC monitoring. Full article
(This article belongs to the Section Fruit Production Systems)
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14 pages, 2072 KB  
Article
Effects of Elevated Temperature on the Phenology and Fruit Shape of the Early-Maturing Peach Cultivar ‘Mihong’
by Seul Ki Lee, Jae Hoon Jeong, Taehwan Shin, Sihyeong Jang, Dongyong Lee and Dong Geun Choi
Horticulturae 2025, 11(10), 1222; https://doi.org/10.3390/horticulturae11101222 - 10 Oct 2025
Viewed by 289
Abstract
This study investigated the effects of elevated temperature on the phenology and morphology of the early-maturing peach cultivar ‘Mihong’. The experiment was conducted from 2019 to 2024 in a temperature-gradient chamber at the National Institute of Horticultural and Herbal Science, Wanju, Korea, with [...] Read more.
This study investigated the effects of elevated temperature on the phenology and morphology of the early-maturing peach cultivar ‘Mihong’. The experiment was conducted from 2019 to 2024 in a temperature-gradient chamber at the National Institute of Horticultural and Herbal Science, Wanju, Korea, with four warming treatments (+2.2 °C to +5.0 °C above ambient). Higher temperatures delayed the onset of endodormancy and markedly shortened the period from endodormancy release to full bloom. Elevated temperatures also increased the LD ratio, with the proportion of fruits exceeding an LD ratio of 1.0 rising significantly with temperature. The LD ratio showed strong correlations with November mean temperature (MT11) and March maximum temperature (HT3) (r = 0.81) and was also associated with the average temperature (Temp3, r = 0.51) and duration (P3, r = −0.54) of the endodormancy release to full bloom phase. Stepwise and PLS regression identified temperatures in May, November, and March as key predictors of the LD ratio, while PCA revealed that temperature variables (Temp3, Temp5) and stage durations (P3, P4) were major contributors. These results confirm that climate warming alters the phenology and morphology of ‘Mihong’, reducing fruit quality and marketability, while providing a basis for predictive modeling and highlighting the importance of adaptive strategies such as shading or growth regulator application. Full article
(This article belongs to the Section Biotic and Abiotic Stress)
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21 pages, 4298 KB  
Article
Growth and Photosynthetic Responses of Lactuca sativa L. to Different Zinc Fertilizer Sources and Applications
by Marina de-Francisco, Esther Hernández-Montes, Sarah DeSanto, Monica Montoya, Ana Obrador and Patricia Almendros
Horticulturae 2025, 11(10), 1221; https://doi.org/10.3390/horticulturae11101221 - 10 Oct 2025
Viewed by 301
Abstract
Zinc (Zn) is an essential micronutrient for plant growth, serving as a co-factor in enzymatic processes and pigment biosynthesis. In horticultural crops such as lettuce, Zn fertilization is increasingly relevant for optimizing yield and nutritional quality. In this study, a greenhouse pot experiment [...] Read more.
Zinc (Zn) is an essential micronutrient for plant growth, serving as a co-factor in enzymatic processes and pigment biosynthesis. In horticultural crops such as lettuce, Zn fertilization is increasingly relevant for optimizing yield and nutritional quality. In this study, a greenhouse pot experiment was conducted using Lactuca sativa L. cv. Romana Verano (Ramiro Arnedo) to evaluate the effects of four Zn sources with contrasting physio-chemical properties—ZnSO4, a synthetic chelate containing DTPA, EDTA, and HEDTA, a Zn–lignosulphonate complex, and ZnO nanoparticles—applied to soil at rates of 15, 30, 60, and 120 mg Zn·kg−1. Morphometric traits, photosynthetic pigmentation, and photosystem performance were assessed to determine differences in plant response. Results showed that low to moderate Zn supply (15–60 mg Zn·kg−1) maintained growth, leaf number, stem diameter, and biomass without significant changes compared to the control. In contrast, the highest dose (120 mg Zn·kg−1), particularly in chelated forms, led to reductions in growth and yield exceeding 80%, reflecting supra-optimal effects. Although lignosulphonate and nanoparticles sources lowered soil Zn availability, they did not affect lettuce growth or yield, indicating their potential as safer agricultural alternatives to conventional Zn fertilizers. Photosynthetic efficiency, measured through chlorophyll fluorescence and electron transport activity, was positively modulated by adequate Zn levels but declined at excessive concentrations. These findings highlight that Zn efficiency strongly depends on its chemical form and applied dose, providing practical insights for optimizing Zn fertilization strategies in lettuce and other horticultural crops. Full article
(This article belongs to the Special Issue 10th Anniversary of Horticulturae—Recent Outcomes and Perspectives)
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16 pages, 5397 KB  
Article
The Agronomic Traits Differences in Hericium erinaceus Cultivated with Different Straw Formulations by Replacing Wood with Straw
by Zhu Lu, Yang Yang, Shuang Hu, Yu-Kun Ma, Zi-Ming Ren, Yue Wang, Ying-Kun Yang, Shu-Juan Ji, Huan Wang and Xiao Huang
Horticulturae 2025, 11(10), 1220; https://doi.org/10.3390/horticulturae11101220 - 10 Oct 2025
Viewed by 337
Abstract
Hericium erinaceus, a rare edible–medicinal fungus, has attracted great attention in food and pharmaceutical fields due to its rich nutritional and bioactive components. However, its traditional cultivation relies heavily on wood chip substrates, causing resource unsustainability. The “wood-replacing-with-grass” technology can address this [...] Read more.
Hericium erinaceus, a rare edible–medicinal fungus, has attracted great attention in food and pharmaceutical fields due to its rich nutritional and bioactive components. However, its traditional cultivation relies heavily on wood chip substrates, causing resource unsustainability. The “wood-replacing-with-grass” technology can address this issue, contributing to ecological conservation and alleviating resource conflicts between edible fungus cultivation and forestry development. This study focused on straw substitution for wood chips, initially screening suitable straw types and optimal addition ratios from 7 straw varieties, and systematically investigating the agronomic trait variations in H. erinaceus under different substrate formulations via cultivation experiments. Results showed the following: (1) Rapeseed straw, soybean straw, and corn straw substituting 20%, 30%, and 40% of wood chips, respectively, promoted better mycelial growth of H. erinaceus. (2) All screened straw formulations enabled fruiting. With increased straw addition, the mycelial full colonization time shortened (up to 5 days shorter in 40% corn/soybean straw treatments). The 20% corn straw treatment showed significantly higher biological efficiency and average fresh weight than the control (CK); the 20% soybean straw treatment had no significant difference in biological efficiency but significantly higher average fresh weight than CK; and the 20% rapeseed straw treatment showed no significant differences in both indexes from CK. However, when straw addition exceeded 20%, fruiting body firmness, yield, and biological efficiency decreased progressively. (3) The 40% soybean straw treatment yielded fruiting bodies with the highest crude protein, manganese, and iron contents, while the 40% rapeseed straw treatment had the highest crude fat, potassium, phosphorus, calcium, zinc, and selenium contents. These findings provide a theoretical basis and practical reference for optimizing H. erinaceus cultivation substrate formulations, improving product quality, and promoting sustainable industrial development. Full article
(This article belongs to the Special Issue Advances in Propagation and Cultivation of Mushroom)
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Article
Genome-Wide Identification of the bHLH Gene Family and Expression Analysis in Anthocyanin Synthesis in Lagerstroemia indica Leaves
by Lu Feng, Yanhong Guo, Xu Han, Aiqin Ding and Jing Shu
Horticulturae 2025, 11(10), 1219; https://doi.org/10.3390/horticulturae11101219 - 10 Oct 2025
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Abstract
The basic Helix-Loop-Helix (bHLH) transcription factor family is crucial for plant growth, development, and stress response regulation. Despite previous studies on the bHLH gene family in Lagerstroemia indica, many bHLH genes remain unidentified, hindering further research on LibHLHs. Here, we identified [...] Read more.
The basic Helix-Loop-Helix (bHLH) transcription factor family is crucial for plant growth, development, and stress response regulation. Despite previous studies on the bHLH gene family in Lagerstroemia indica, many bHLH genes remain unidentified, hindering further research on LibHLHs. Here, we identified 150 LibHLHs from the genome of L. indica and categorized them into 12 subfamilies (comprising 25 subgroups) showing conservation within subgroups. Cis-acting element analysis suggests roles in plant development, and responses to light, hormones, and stress. Examination of gene expression patterns highlighted the potential involvement of specific genes, such as LibHLH25 in subgroup IIIf, LibHLH68, LibHLH106, and LibHLH142 in subgroup IIIb, and LibHLH112 in subgroup VIIa, in anthocyanin biosynthesis in leaves of L. indica. This investigation enhances our comprehension of the complexity of the bHLH gene family and highlights the potential roles of LibHLHs in anthocyanin biosynthesis in L. indica, offering valuable insights for future genetic breeding endeavors. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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