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35 Results Found

  • Review
  • Open Access

Antimicrobial Resistance: How Can We Overcome the Problem?

  • Valerio Massimo Sora,
  • Clementine Wallet,
  • Gabriele Meroni,
  • Thomas Loustau,
  • Olivier Rohr,
  • Alfonso Zecconi and
  • Christian Schwartz

Antimicrobials are common drugs used to treat and prevent infectious diseases in plants, animals, and humans. Since their discovery in the mid-20th century, their use has dramatically increased for the benefit of humanity, and also for animal care. H...

  • Article
  • Open Access
39 Citations
6,100 Views
20 Pages

Introduction of NGS in Environmental Surveillance for Healthcare-Associated Infection Control

  • Manola Comar,
  • Maria D’Accolti,
  • Carolina Cason,
  • Irene Soffritti,
  • Giuseppina Campisciano,
  • Luca Lanzoni,
  • Matteo Bisi,
  • Antonella Volta,
  • Sante Mazzacane and
  • Elisabetta Caselli

The hospital environment significantly contributes to the onset of healthcare associated infections (HAIs), representing the most frequent and severe complications related to health care. The monitoring of hospital surfaces is generally addressed by...

  • Article
  • Open Access
25 Citations
5,600 Views
16 Pages

Monitoring antibiotic resistance genes (ARGs) across ecological niches is critical for assessing the impacts distinct microbial communities have on the global spread of resistance. In permafrost-associated soils, climate and human driven disturbances...

  • Article
  • Open Access
2 Citations
3,764 Views
24 Pages

The Assessment of the Risk Ranking and Mobility Potential Associated with Environmental Resistomes in Wastewater Using Metagenomic Assembly

  • Osama S. Ali,
  • Walaa G. Hozayen,
  • Abdulwahab S. Almutairi,
  • Sherif Edris,
  • Alaa Karkashan,
  • Aala A. Abulfaraj,
  • Roba Attar,
  • Amged A. Ouf,
  • Basma Abbas and
  • Hamada M. Mahmoud

1 November 2022

The environmental pollution of antibiotic resistance genes (ARGs) and antibiotic-resistant bacteria (ARB) is a growing public health concern. In the current study, de novo metagenomic assembly and bioinformatics analysis approaches were utilized to e...

  • Review
  • Open Access
1,160 Views
10 Pages

Dermatophilosis: Current Advances and Future Directions

  • Olamilekan Gabriel Banwo,
  • Olalekan Chris Akinsulie,
  • Ridwan Olamilekan Adesola and
  • Olalekan Taiwo Jeremiah

Dermatophilosis, caused by the Gram-positive, filamentous bacterium Dermatophilus congolensis, is an important skin disease that adversely affects cattle health and productivity. It also affects other domestic and wild animals and occasionally humans...

  • Article
  • Open Access
700 Views
21 Pages

6 November 2025

Biological recolonization after cleaning remains a major challenge for the conservation of stone cultural heritage. As recolonization can start within months to a few years following intervention, developing rapid, field-deployable diagnostic approac...

  • Review
  • Open Access
1 Citations
1,893 Views
11 Pages

Aquatic Resistome in Freshwater and Marine Environments: Interactions Between Commensal and Pathogenic in the Context of Aquaculture and One Health

  • Ana V. Mourão,
  • Diana Fernandes,
  • Telma de Sousa,
  • Rita Calouro,
  • Sónia Saraiva,
  • Gilberto Igrejas and
  • Patrícia Poeta

Aquatic resistomes are important reservoirs of antibiotic resistance genes (ARGs) and their precursors, which can proliferate and dissipate in pathogenic microorganisms that affect humans and animals, especially due to anthropogenic pressures such as...

  • Review
  • Open Access
3,086 Views
44 Pages

A Practical Framework for Environmental Antibiotic Resistance Monitoring in Freshwater Ecosystems

  • Irene Beltrán de Heredia,
  • Itziar Alkorta,
  • Carlos Garbisu and
  • Estilita Ruiz-Romera

Antibiotic resistance (AR) and contamination are critical public and environmental health issues. In the last years, the environmental component of AR has acquired much interest due to its potential links with the human resistome. In particular, fres...

  • Brief Report
  • Open Access
5 Citations
2,839 Views
7 Pages

Conifer Needle Phyllosphere as a Potential Passive Monitor of Bioaerosolised Antibiotic Resistance Genes

  • Paul B. L. George,
  • Samantha Leclerc,
  • Nathalie Turgeon,
  • Marc Veillette and
  • Caroline Duchaine

Monitoring antibiotic resistance genes (ARGs) is vital to the One Health approach to tackling the antibiotic resistance crisis. It has been suggested that conifer needles can be used as passive bioaerosol samplers. Here, the use of conifer needles as...

  • Article
  • Open Access
5 Citations
3,698 Views
17 Pages

A Comparative Assessment of High-Throughput Quantitative Polymerase Chain Reaction versus Shotgun Metagenomic Sequencing in Sediment Resistome Profiling

  • Nazima Habibi,
  • Saif Uddin,
  • Montaha Behbehani,
  • Hanan A. Al-Sarawi,
  • Mohamed Kishk,
  • Waleed Al-Zakri,
  • Nasreem AbdulRazzack,
  • Anisha Shajan and
  • Farhana Zakir

12 October 2023

Prolonged and excessive use of antibiotics has resulted in the development of antimicrobial resistance (AMR), which is considered an emerging global challenge that warrants a deeper understanding of the antibiotic-resistant gene elements (ARGEs/resis...

  • Article
  • Open Access
19 Citations
4,744 Views
23 Pages

Antimicrobial Resistance and Genetic Diversity of Pseudomonas aeruginosa Strains Isolated from Equine and Other Veterinary Samples

  • Marine Pottier,
  • Sophie Castagnet,
  • François Gravey,
  • Guillaume Leduc,
  • Corinne Sévin,
  • Sandrine Petry,
  • Jean-Christophe Giard,
  • Simon Le Hello and
  • Albertine Léon

30 December 2022

Pseudomonas aeruginosa is one of the leading causes of healthcare-associated infections in humans. This bacterium is less represented in veterinary medicine, despite causing difficult-to-treat infections due to its capacity to acquire antimicrobial r...

  • Article
  • Open Access
9 Citations
3,443 Views
12 Pages

Discovery of Highly Trimethoprim-Resistant DfrB Dihydrofolate Reductases in Diverse Environmental Settings Suggests an Evolutionary Advantage Unrelated to Antibiotic Resistance

  • Stella Cellier-Goetghebeur,
  • Kiana Lafontaine,
  • Claudèle Lemay-St-Denis,
  • Princesse Tsamo,
  • Alexis Bonneau-Burke,
  • Janine N. Copp and
  • Joelle N. Pelletier

7 December 2022

Type B dihydrofolate reductases (DfrB) are intrinsically highly resistant to the widely used antibiotic trimethoprim, posing a threat to global public health. The ten known DfrB family members have been strongly associated with genetic material relat...

  • Article
  • Open Access
296 Views
18 Pages

Comparative Genomics of Human- and Wastewater-Derived CPE Isolates in The Netherlands Reveals Shared and Complementary Characteristics

  • Hetty Blaak,
  • Sandra Witteveen,
  • Angela de Haan,
  • Marga G. van Santen-Verheuvel,
  • Merel A. Kemper,
  • Ana Maria de Roda Husman,
  • Antoni P. A. Hendrickx,
  • Heike Schmitt and
  • The Dutch CPE Surveillance Study Group

Wastewater-based surveillance is gaining interest worldwide as a complementary tool informing human surveillance of pathogens, among which are antibiotic-resistant bacteria. The current study investigated whether CPE detected within the Dutch human C...

  • Article
  • Open Access
37 Citations
6,847 Views
17 Pages

Occurrence and Antimicrobial Resistance Traits of Escherichia coli from Wild Birds and Rodents in Singapore

  • Kar Hui Ong,
  • Wei Ching Khor,
  • Jing Yi Quek,
  • Zi Xi Low,
  • Sathish Arivalan,
  • Mahathir Humaidi,
  • Cliff Chua,
  • Kelyn L. G. Seow,
  • Siyao Guo and
  • Moon Y. F. Tay
  • + 3 authors

Antimicrobial resistance (AMR) in Escherichia coli (E. coli) poses a public health concern worldwide. Wild birds and rodents, due to their mobility, are potential vehicles for transmission of AMR bacteria to humans. Ninety-six wild birds’ faeca...

  • Article
  • Open Access
10 Citations
3,010 Views
14 Pages

Genomic Characterization of Colistin-Resistant Isolates from the King Fahad Medical City, Kingdom of Saudi Arabia

  • Liliane Okdah,
  • Mohammed Saeed AlDosary,
  • Abeer AlMazyed,
  • Hussain Mushabbab Alkhurayb,
  • Meshari Almossallam,
  • Yousef sultan Al Obaisi,
  • Mohammed Ali Marie,
  • Tamir Abdelrahman and
  • Seydina M. Diene

11 November 2022

Background: Whole-genome sequencing is one of the best ways to investigate resistance mechanisms of clinical isolates as well as to detect and identify circulating multi-drug-resistant (MDR) clones or sub-clones in a given hospital setting. Methods:...

  • Review
  • Open Access
63 Citations
5,475 Views
14 Pages

Pseudomonas aeruginosa high-risk clones are disseminated worldwide and they are common causative agents of hospital-acquired infections. In this review, we will summarize available data of high-risk P. aeruginosa clones from confirmed outbreaks and b...

  • Article
  • Open Access
16 Citations
3,921 Views
18 Pages

Temporal Resistome and Microbial Community Dynamics in an Intensive Aquaculture Facility with Prophylactic Antimicrobial Treatment

  • Hemant J. Patil,
  • Joao Gatica,
  • Avihai Zolti,
  • Ayana Benet-Perelberg,
  • Alon Naor,
  • Barak Dror,
  • Ashraf Al Ashhab,
  • Sophi Marman,
  • Nur A. Hasan and
  • Rita R. Colwell
  • + 3 authors

Excessive use of antimicrobials in aquaculture is concerning, given possible environmental ramifications and the potential contribution to the spread of antimicrobial resistance (AR). In this study, we explored seasonal abundance of antimicrobial res...

  • Article
  • Open Access
2 Citations
2,197 Views
11 Pages

Whole-Genome Sequencing and Molecular Analysis of Ceftazidime–Avibactam-Resistant KPC-Producing Klebsiella pneumoniae from Intestinal Colonization in Elderly Patients

  • Giulia Errico,
  • Maria Del Grosso,
  • Michela Pagnotta,
  • Manuela Marra,
  • Maria Carollo,
  • Marina Cerquetti,
  • Elena Fogato,
  • Elisabetta Cesana,
  • Flaminia Gentiloni Silverj and
  • Dorjan Zabzuni
  • + 5 authors

Ceftazidime–avibactam (CAZ-AVI) is an active antibiotic combination of a β-lactam–β-lactamase inhibitor against carbapenemase-producing Enterobacterales. Reports of resistance to CAZ-AVI other than metallo-β-lactamases have...

  • Article
  • Open Access
3 Citations
2,368 Views
18 Pages

Antibiotic Susceptibility Profiles of Bacterial Isolates Recovered from Abscesses in Cattle and Sheep at a Slaughterhouse in Algeria

  • Chahrazed Yousfi,
  • Saoussen Oueslati,
  • Dina Daaboul,
  • Delphine Girlich,
  • Alexis Proust,
  • Chafia Bentchouala and
  • Thierry Naas

Abscesses represent the most prominent emerging problem in the red meat industry, leading to great economic constraints and public health hazards. Data on etiological agents present in these purulent lesions in Algeria are very scarce. The aim of thi...

  • Article
  • Open Access
6 Citations
3,098 Views
10 Pages

Whole Genome Sequencing and Molecular Analysis of Carbapenemase-Producing Escherichia coli from Intestinal Carriage in Elderly Inpatients

  • Maria Giufrè,
  • Giulia Errico,
  • Monica Monaco,
  • Maria Del Grosso,
  • Michela Sabbatucci,
  • Annalisa Pantosti,
  • Marina Cerquetti,
  • Michela Pagnotta,
  • Manuela Marra and
  • Maria Carollo
  • + 6 authors

The spread of carbapenemase-producing (CP) Enterobacterales is currently a worldwide concern, especially in the elderly. Twelve CP-E. coli isolated from rectal swabs of colonized inpatients aged ≥65 years from four hospitals in two Italian cities...

  • Article
  • Open Access
11 Citations
3,240 Views
12 Pages

Emergence of New ST301 Shiga Toxin-Producing Escherichia coli Clones Harboring Extra-Intestinal Virulence Traits in Europe

  • Aurélie Cointe,
  • Etienne Bizot,
  • Sabine Delannoy,
  • Patrick Fach,
  • Philippe Bidet,
  • André Birgy,
  • François-Xavier Weill,
  • Sophie Lefèvre,
  • Patricia Mariani-Kurkdjian and
  • Stéphane Bonacorsi

26 September 2021

O80:H2 enterohemorrhagic Escherichia coli (EHEC) of sequence type ST301 is one of the main serotypes causing European hemolytic and uremic syndrome, but also invasive infections, due to extra-intestinal virulence factors (VFs). Here, we determined wh...

  • Article
  • Open Access
1,486 Views
14 Pages

Monitoring Antibiotic Resistance in Wastewater: Findings from Three Treatment Plants in Sicily, Italy

  • Roberta Magnano San Lio,
  • Andrea Maugeri,
  • Martina Barchitta,
  • Giuliana Favara,
  • Maria Clara La Rosa,
  • Claudia La Mastra and
  • Antonella Agodi

Antimicrobial resistance (AMR) poses a global public health threat. Wastewater analysis provides valuable insights into antimicrobial resistance genes (ARGs), identifying sources and trends and evaluating AMR control measures. Between February 2022 a...

  • Article
  • Open Access
4 Citations
1,950 Views
16 Pages

Ultrasensitive CRISPR/Cas12a-Based System for Detection of BlaOXA-1 Gene in Antibiotic-Resistant Microorganisms

  • Marina Tyumentseva,
  • Aleksandr Tyumentsev,
  • Anna Prelovskaya,
  • Andrey Akinin,
  • Yulia Mikhailova,
  • Andrey Shelenkov,
  • Anna Panevina and
  • Vasiliy Akimkin

The blaOXA-1 gene encodes an oxacillin-hydrolyzing beta-lactamase of extended-spectrum beta-lactamase (ESBL)-producing microorganisms. The blaOXA-1 gene is found in the resistomes of some Enterobacteriaceae, Morganellaceae, Pasteurellaceae, Moraxella...

  • Review
  • Open Access
671 Views
21 Pages

Antimicrobial resistance (AMR) remains a critical global challenge, requiring novel complementary strategies beyond antibiotic development. Probiotic-fermented foods (PFFs) offer an emerging, low-cost approach to mitigate AMR risk through ecological,...

  • Article
  • Open Access
190 Views
20 Pages

Combined Effect of Plasma-Activated Water, Edible Coating, and Active Packaging on Cherry Tomato Shelf-Life: Kinetics and Microbiome Approach

  • Syed Mudabbar Hussain Shah,
  • Stefania Volpe,
  • Francesca Colonna,
  • Vincenzo Valentino,
  • Francesca De Filippis,
  • Elena Torrieri and
  • Silvana Cavella

5 January 2026

Cherry tomatoes are highly appreciated for their nutritional value but remain highly perishable due to rapid respiration and senescence. This study evaluated a multi-hurdle strategy combining plasma-activated water (PAW), sodium caseinate-based edibl...

  • Communication
  • Open Access
11 Citations
5,085 Views
9 Pages

6 June 2020

Pneumonia is the sixth largest cause of death in the UK. It is usually caused by Streptococcus pneumoniae, which healthy individuals can carry in their nose without symptoms of disease. Antimicrobial resistance further increases mortality and morbidi...

  • Article
  • Open Access
5 Citations
2,449 Views
8 Pages

Characteristics of tet(X4)−Producing Escherichia coli in Chicken and Pig Farms in Hunan Province, China

  • Jie Yang,
  • Gang Xiao,
  • Ning Xiao,
  • Zonghan Jiang,
  • Chao Jiang,
  • Yujuan Li,
  • Wenxin Chen,
  • Hongguang Lin,
  • Zhiliang Sun and
  • Jiyun Li

Background: The plasmid−mediated tigecycline resistance gene tet(X4) confers a high level of resistance to tigecycline. The experiment aims to investigate the prevalence and characterization of tet(X4) in Escherichia coli isolates from chicken...

  • Systematic Review
  • Open Access
769 Views
9 Pages

Mangrove Ecosystems as Reservoirs of Antibiotic Resistance Genes: A Narrative Review

  • Monthon Lertcanawanichakul,
  • Phuangthip Bhoopong and
  • Phusit Horpet

14 October 2025

Background: Mangrove ecosystems are critical coastal environments providing ecological services and acting as buffers between terrestrial and marine systems. Rising antibiotic use in aquaculture and coastal agriculture has led to the dissemination of...

  • Article
  • Open Access
4 Citations
2,649 Views
13 Pages

Genomic Characterization of Salmonella Isangi: A Global Perspective of a Rare Serovar

  • Anamaria Mota Pereira dos Santos,
  • Pedro Panzenhagen,
  • Rafaela G. Ferrari,
  • Ana Carolina S. de Jesus,
  • Ana Beatriz Portes,
  • Alan Clavelland Ochioni,
  • Dalia dos Prazeres Rodrigues and
  • Carlos Adam Conte-Junior

Salmonella Isangi is an infrequent serovar that has recently been reported in several countries due to nosocomial infections. A considerable number of reports indicate Salmonella Isangi multidrug resistance, especially to cephalosporins, which could...

  • Article
  • Open Access
1,114 Views
9 Pages

Clonal Diversity of Extraintestinal Pathogenic Escherichia coli Strains Isolated from Canine Urinary Tract Infections in Brazil

  • Luciana Sartori,
  • João Pedro Rueda Furlan,
  • Fábio Parra Sellera,
  • Fernanda Borges Barbosa,
  • Yohanna Carvalho dos Santos Aoun Chikhani,
  • Gabriel Gandolfi and
  • Terezinha Knöbl

Background/Objectives: Extraintestinal pathogenic Escherichia coli (ExPEC) strains, particularly those belonging to phylogenetic group B2, are clinically significant due to their frequent involvement in urinary tract infections (UTIs) and display ant...

  • Article
  • Open Access
498 Views
12 Pages

An ICU Outbreak Due to Two Populations of Carbapenem-Resistant Klebsiella pneumoniae Isolates Belonging to ST11 and ST39 Types, Harbouring Double Carbapenemase Genes

  • Olga Koutsopetra,
  • Sophia Vourli,
  • Georgios Stravopodis,
  • Sophia Hatzianastasiou,
  • Stavros Dimopoulos,
  • Themistocles Chamogeorgakis,
  • Despina Tassi-Papatheou,
  • Spyros Pournaras and
  • Joseph Papaparaskevas

Carbapenem-resistant Klebsiella pneumoniae isolates harbouring double carbapenemases, from patients in a surgical and transplantation ICU, were investigated to better understand the dispersion of the pathogen. Twenty-three carbapenem-resistant K. pne...

  • Review
  • Open Access
365 Views
27 Pages

10 December 2025

Wild boars, widely distributed across natural, agricultural, and urban landscapes, represent an ideal sentinel species for monitoring the emergence and spread of antimicrobial resistance (AMR) at the human–wildlife–livestock interface wit...

  • Article
  • Open Access
6 Citations
3,850 Views
19 Pages

Genomic Landscape of Multidrug Resistance and Virulence in Enterococcus faecalis IRMC827A from a Long-Term Patient

  • J. Francis Borgio,
  • Reem AlJindan,
  • Lujeen H. Alghourab,
  • Rahaf Alquwaie,
  • Razan Aldahhan,
  • Norah F. Alhur,
  • Doaa M. AlEraky,
  • Nehal Mahmoud,
  • Noor B. Almandil and
  • Sayed AbdulAzeez

29 September 2023

We report on a highly virulent, multidrug-resistant strain of Enterococcus faecalis IRMC827A that was found colonizing a long-term male patient at a tertiary hospital in Khobar, Saudi Arabia. The E. faecalis IRMC827A strain carries several antimicrob...

  • Article
  • Open Access
11 Citations
4,857 Views
16 Pages

Antimicrobial Resistance and Genomic Characterization of Six New Sequence Types in Multidrug-Resistant Pseudomonas aeruginosa Clinical Isolates from Pakistan

  • Sidra Irum,
  • Kanwal Naz,
  • Nimat Ullah,
  • Zeeshan Mustafa,
  • Amjad Ali,
  • Muhammad Arslan,
  • Kashaf Khalid and
  • Saadia Andleeb

12 November 2021

Pseudomonas aeruginosa (P. aeruginosa) is a major bacterial pathogen associated with a variety of infections with high mortality rates. Most of the clinical P. aeruginosa isolates belong to a limited number of genetic subgroups characterized by multi...

  • Article
  • Open Access
2 Citations
1,990 Views
16 Pages

A Snapshot of Antimicrobial Resistance in Semi-Wild Oryx: Baseline Data from Qatar

  • Asma Mushahidur Rahman,
  • Salma E. Ahmed,
  • Shayma A. Osman,
  • Radhia A. Al-Haddad,
  • Abdallah Almiski,
  • Ristha Kamar,
  • Hana Abdelrahman,
  • Issmat I. Kassem,
  • Andrea Dogliero and
  • Nahla O. Eltai

Background/Objectives: The spread of antimicrobial resistance (AMR) is a growing global health concern. Wild animals can play an important role in the amplification and dissemination of AMR and in conservation efforts aiming at controlling diseases i...