Skip Content
You are currently on the new version of our website. Access the old version .

41 Results Found

  • Protocol
  • Open Access
5 Citations
5,183 Views
18 Pages

An Effective Protocol for Proteome Analysis of Medaka (Oryzias latipes) after Acute Exposure to Ionizing Radiation

  • Yeni Pérez-Gélvez,
  • Shem Unger,
  • Gerardo Gutiérrez-Sánchez,
  • Robert Bridger,
  • Olin E. Rhodes and
  • Carl Bergmann

All terrestrial organisms are subject to evolutionary pressures associated with natural sources of ionizing radiation (IR). The legacy of human-induced IR associated with energy, weapons production, medicine, and research has changed the distribution...

  • Article
  • Open Access
50 Citations
7,856 Views
21 Pages

Increased understanding of the role of the nanomaterial protein corona in driving nanomaterial uptake into, and impacts on, cells and organisms, and the consequent need for characterization of the corona, has led to a flourishing of methods for isola...

  • Article
  • Open Access
10 Citations
3,588 Views
34 Pages

Investigating the Function of Human Jumping Translocation Breakpoint Protein (hJTB) and Its Interacting Partners through In-Solution Proteomics of MCF7 Cells

  • Madhuri Jayathirtha,
  • Danielle Whitham,
  • Shelby Alwine,
  • Mary Donnelly,
  • Anca-Narcisa Neagu and
  • Costel C. Darie

28 November 2022

Human jumping translocation breakpoint (hJTB) gene is located on chromosome 1q21 and is involved in unbalanced translocation in many types of cancer. JTB protein is ubiquitously present in normal cells but it is found to be overexpressed or downregul...

  • Article
  • Open Access
5 Citations
4,326 Views
27 Pages

Genome and Secretome Analysis of Staphylotrichum longicolleum DSM105789 Cultured on Agro-Residual and Chitinous Biomass

  • Arslan Ali,
  • Bernhard Ellinger,
  • Sophie C. Brandt,
  • Christian Betzel,
  • Martin Rühl,
  • Carsten Wrenger,
  • Hartmut Schlüter,
  • Wilhelm Schäfer,
  • Hévila Brognaro and
  • Martin Gand

Staphylotrichum longicolleum FW57 (DSM105789) is a prolific chitinolytic fungus isolated from wood, with a chitinase activity of 0.11 ± 0.01 U/mg. We selected this strain for genome sequencing and annotation, and compiled its growth characteristics o...

  • Article
  • Open Access
6 Citations
3,471 Views
18 Pages

Mass Spectrometry-Based Proteomic Profiling of a Silvaner White Wine

  • Wendell Albuquerque,
  • Parviz Ghezellou,
  • Leif Seidel,
  • Johannes Burkert,
  • Frank Will,
  • Ralf Schweiggert,
  • Bernhard Spengler,
  • Holger Zorn and
  • Martin Gand

4 April 2023

The comprehensive identification of the proteome content from a white wine (cv. Silvaner) is described here for the first time. The wine protein composition isolated from a representative wine sample (250 L) was identified via mass spectrometry (MS)-...

  • Article
  • Open Access
35 Citations
6,490 Views
16 Pages

Comparison of Two Solid-Phase Extraction (SPE) Methods for the Identification and Quantification of Porcine Retinal Protein Markers by LC-MS/MS

  • Carsten Schmelter,
  • Sebastian Funke,
  • Jana Treml,
  • Anja Beschnitt,
  • Natarajan Perumal,
  • Caroline Manicam,
  • Norbert Pfeiffer and
  • Franz H. Grus

3 December 2018

Proper sample preparation protocols represent a critical step for liquid chromatography-mass spectrometry (LC-MS)-based proteomic study designs and influence the speed, performance and automation of high-throughput data acquisition. The main objectiv...

  • Article
  • Open Access
5 Citations
2,912 Views
17 Pages

12 May 2022

Aquareovirus, which is a member of the Reoviridae family, was isolated from aquatic animals. A close molecular evolutionary relationship between aquareoviruses and mammalian orthoreoviruses was revealed. However, the functions of the aquareovirus gen...

  • Feature Paper
  • Article
  • Open Access
21 Citations
5,599 Views
14 Pages

The so-called tube-gel method is a sample preparation protocol allowing for management of SDS for protein solubilization through in-gel protein trapping. Because of its simplicity, we assumed that once miniaturized, this method could become a standar...

  • Article
  • Open Access
4 Citations
4,611 Views
13 Pages

Low Levels of IgG Recognizing the α-1-Antitrypsin Peptide and Its Association with Taiwanese Women with Primary Sjögren’s Syndrome

  • Yu-Sheng Chang,
  • Chih-Hong Pan,
  • Che-Chang Chang,
  • Kai-Leun Tsai,
  • Han-Wen Chou,
  • Jin-Hua Chen,
  • Sheng-Hong Lin,
  • Yi-Ying Lu,
  • Chih-Chun Tai and
  • Ching-Yu Lin
  • + 1 author

18 December 2017

The aim of this study was to examine oxidative stress and low level of α-1-antitrypsin (A1AT) in primary Sjögren’s syndrome (pSS), and evaluate the associated autoreactivity against unmodified and their 4-hydroxy-2-nonenal (HNE)-modified peptides wit...

  • Article
  • Open Access
11 Citations
4,797 Views
13 Pages

25 April 2023

Suspension TRAPping filter (sTRAP) is an attractive sample preparation method for proteomics studies. The sTRAP protocol uses 5% SDS that maximizes protein solubilization. Proteins are trapped on a borosilicate glass membrane filter, where SDS is sub...

  • Article
  • Open Access
4 Citations
4,747 Views
10 Pages

Proteomic Analysis of Differentially-Expressed Proteins in the Liver of Streptozotocin-Induced Diabetic Rats Treated with Parkia biglobosa Protein Isolate

  • Bolajoko Idiat Ogunyinka,
  • Babatunji Emmanuel Oyinloye,
  • Foluso Oluwagbemiga Osunsanmi,
  • Andrew Rowland Opoku and
  • Abidemi Paul Kappo

24 January 2018

Protein isolate from Parkia biglobosa seeds is believed to possess excellent anti-diabetic properties. The purpose of this study was to identify differentially expressed proteins in liver of streptozotocin-induced diabetic rats treated with Parkia bi...

  • Article
  • Open Access
8 Citations
4,455 Views
13 Pages

7 May 2022

White-fleshed pitaya (Selenicereus undatus) and red-fleshed pitaya (Selenicereus costaricensis) are becoming increasingly popular because of their nutritional and medicinal benefits. However, in addition to their beneficial properties, allergy to pit...

  • Article
  • Open Access
5 Citations
4,382 Views
20 Pages

Protocol for Increasing the Sensitivity of MS-Based Protein Detection in Human Chorionic Villi

  • Timur Shkrigunov,
  • Pavel Pogodin,
  • Victor Zgoda,
  • Olesya Larina,
  • Yulia Kisrieva,
  • Maria Klimenko,
  • Oleg Latyshkevich,
  • Peter Klimenko,
  • Andrey Lisitsa and
  • Natalia Petushkova

An important step in the proteomic analysis of missing proteins is the use of a wide range of tissues, optimal extraction, and the processing of protein material in order to ensure the highest sensitivity in downstream protein detection. This work de...

  • Article
  • Open Access
7 Citations
4,592 Views
18 Pages

Urinary Extracellular Vesicles and Salt-Losing Tubulopathies: A Proteomic Approach

  • Francesca Raimondo,
  • Clizia Chinello,
  • Luigi Porcaro,
  • Fulvio Magni and
  • Marina Pitto

Renal tubular cells release urinary extracellular vesicles (uEV) that are considered a promising source of molecular markers for renal dysfunction and injury. We investigated uEV proteomes of patients with hereditary salt-losing tubulopathies (SLTs),...

  • Article
  • Open Access
9 Citations
9,185 Views
14 Pages

18 March 2014

The present study was undertaken to identify proteins that interact with the mammalian target of rapamycin complex 1 (mTORC1) to enable it to carry out its crucial cell signaling functions. Endogenous and myc-tag mTORC1 was purified, in-gel tryptic d...

  • Article
  • Open Access
57 Citations
12,504 Views
18 Pages

Sweet Pepper (Capsicum annuum L.) Fruits Contain an Atypical Peroxisomal Catalase That Is Modulated by Reactive Oxygen and Nitrogen Species

  • Marta Rodríguez-Ruiz,
  • Salvador González-Gordo,
  • Amanda Cañas,
  • María Jesús Campos,
  • Alberto Paradela,
  • Francisco J. Corpas and
  • José M. Palma

4 September 2019

During the ripening of sweet pepper (Capsicum annuum L.) fruits, in a genetically controlled scenario, enormous metabolic changes occur that affect the physiology of most cell compartments. Peroxisomal catalase gene expression decreases after pepper...

  • Feature Paper
  • Article
  • Open Access
1,312 Views
24 Pages

9 October 2025

The adrenal glands are central to the stress response in cetaceans, yet their morphological and molecular changes under chronic stress remain poorly described. We investigated adrenal histology and protein composition in stranded common dolphins (Del...

  • Article
  • Open Access
3 Citations
3,609 Views
15 Pages

Low Levels of IgM and IgA Recognizing Acetylated C1-Inhibitor Peptides Are Associated with Systemic Lupus Erythematosus in Taiwanese Women

  • Kai-Leun Tsai,
  • Chen-Chung Liao,
  • Yu-Sheng Chang,
  • Ching-Wen Huang,
  • Yu-Chu Huang,
  • Jin-Hua Chen,
  • Sheng-Hong Lin,
  • Chih-Chun Tai,
  • Yi-Fang Lin and
  • Ching-Yu Lin

26 April 2019

The objective of this study was to identify novel acetylation (Ac) modifications of the C1-inhibitor (C1-INH) and explain the association of the levels of autoantibodies against acetylated C1-INH peptides with the risk of developing systemic lupus er...

  • Article
  • Open Access
11 Citations
5,096 Views
14 Pages

Comparative Venom Proteomics of Iranian, Macrovipera lebetina cernovi, and Cypriot, Macrovipera lebetina lebetina, Giant Vipers

  • Parviz Ghezellou,
  • Melissa Dillenberger,
  • Seyed Mahdi Kazemi,
  • Daniel Jestrzemski,
  • Bernhard Hellmann and
  • Bernhard Spengler

20 October 2022

Envenoming by Macrovipera lebetina subspecies causes severe life-threatening difficulties for people living in North Africa and the Middle East. To better understand the pathophysiology of envenoming and improve patient management, knowledge about th...

  • Article
  • Open Access
3,913 Views
18 Pages

Schistosoma mansoni Adult Worm Protective and Diagnostic Proteins in n-Butanol Extracts Revealed by Proteomic Analysis

  • Guidenn Sulbarán,
  • Giovani C. Verissimo da Costa,
  • Sandra Losada,
  • José M. Peralta and
  • Italo M. Cesari

24 December 2021

The S. mansoni adult worm n-butanol extract (Sm-AWBE) has been previously shown to contain specific S. mansoni antigens that have been used for immunodiagnosis of schistosomiasis in solid phase alkaline phosphatase immunoassay (APIA) and western blot...

  • Article
  • Open Access
6 Citations
4,532 Views
18 Pages

Inter-Regional Proteomic Profiling of the Human Brain Using an Optimized Protein Extraction Method from Formalin-Fixed Tissue to Identify Signaling Pathways

  • Jennilee M. Davidson,
  • Stephanie L. Rayner,
  • Sidong Liu,
  • Flora Cheng,
  • Antonio Di Ieva,
  • Roger S. Chung and
  • Albert Lee

21 February 2023

Proteomics offers vast potential for studying the molecular regulation of the human brain. Formalin fixation is a common method for preserving human tissue; however, it presents challenges for proteomic analysis. In this study, we compared the effici...

  • Article
  • Open Access
14 Citations
4,870 Views
13 Pages

Emerging Allergens in Goji Berry Superfruit: The Identification of New IgE Binding Proteins towards Allergic Patients’ Sera

  • Carina Gabriela Uasuf,
  • Elisabetta De Angelis,
  • Rocco Guagnano,
  • Rosa Pilolli,
  • Claudia D’Anna,
  • Danilo Villalta,
  • Ignazio Brusca and
  • Linda Monaci

29 April 2020

The goji berry (Lycium barbarum L.) (GB) is gaining increasing attention with high consumption worldwide due to its exceptional nutritional value and medicinal benefits displayed in humans. Beyond their beneficial properties, GBs contain renowned all...

  • Article
  • Open Access
45 Citations
6,248 Views
15 Pages

8 November 2018

Major proteins contained in dried giant grouper roe (GR) such as vitellogenin (from Epinephelus coioides; NCBI accession number: AAW29031.1), apolipoprotein A-1 precursor (from Epinephelus coioides; NCBI accession number: ACI01807.1) and apolipoprote...

  • Article
  • Open Access
13 Citations
3,082 Views
18 Pages

12 May 2021

The influence of microstructure and mechanical properties on the in vitro digestibility of 15% whey protein isolate (WPI) gels was investigated. Gels were prepared via heat set gelation at three pH values (pH 3, 5 and 7), which produced gels with dis...

  • Article
  • Open Access
15 Citations
6,122 Views
18 Pages

Mass Spectrometry Characterization of the SDS-PAGE Protein Profile of Legumins and Vicilins from Chickpea Seed

  • Antonella Di Francesco,
  • Michele Andrea De Santis,
  • Aldo Lanzoni,
  • Maria Gaetana Giovanna Pittalà,
  • Rosaria Saletti,
  • Zina Flagella and
  • Vincenzo Cunsolo

14 March 2024

Chickpea (Cicer arietinum L.) seed proteins show a lot of functional properties leading this legume to be an interesting component for the development of protein-enriched foods. However, both the in-depth proteomic investigation and structural charac...

  • Article
  • Open Access
4 Citations
2,671 Views
13 Pages

SWATH Mass Spectrometry-Based CSF Proteome Profile of GBA-Linked Parkinson’s Disease Patients

  • Saima Zafar,
  • Aneeqa Noor,
  • Neelam Younas,
  • Mohsin Shafiq,
  • Matthias Schmitz,
  • Isabel Wurster,
  • Kathrin Brockmann,
  • Thomas Gasser and
  • Inga Zerr

16 November 2022

β-glucocerebrosidase (GBA)-associated mutations are a significant risk factor for Parkinson’s disease (PD) that aggravate the disease pathology by upregulating the deposition of α-Synuclein (α-Syn). The resultant clinical profi...

  • Review
  • Open Access
9 Citations
4,773 Views
20 Pages

31 August 2020

Searching for new cancer-related biomarkers is a key priority for the early detection of solid tumors, such as colorectal cancer (CRC), in clinically relevant biological fluids. The cell line and/or tumor tissue secretome represents a valuable resour...

  • Article
  • Open Access
22 Citations
4,984 Views
25 Pages

14 September 2019

Currently, information on the allergens profiles of different mustard varieties is rather scarce. Therefore, the objective of this study was to assess protein profiles and immunoglobulin E (IgE)-binding patterns of selected Canadian mustard varieties...

  • Article
  • Open Access
5 Citations
2,764 Views
12 Pages

Prevention of Silica Gel Formation for Eudialyte Study Using New Digestion Reactor

  • Ivan Silin,
  • Christian Dertmann,
  • Vesna S. Cvetković,
  • Srecko Stopic and
  • Bernd Friedrich

24 January 2024

This work includes a combined hydrometallurgical treatment of a eudialyte ore sample with a subsequent preparation of leaching residue using mechanical separation methods. Hydrometallurgical treatment contains dry digestion with sulphuric acid at roo...

  • Article
  • Open Access
7 Citations
3,198 Views
16 Pages

17 June 2022

Mackerel (Scomber australasicus) steaming juice (MSJ) can be a good source of proteins. However, it is often treated as food waste during the canning process. The objective of this study was to investigate the Angiotensin-I converting enzyme (ACE-I)...

  • Article
  • Open Access
4 Citations
9,675 Views
12 Pages

Comparative N-Glycosylation Analysis of the Fc Portions of a Chimeric Human Coagulation Factor VIII and Immunoglobulin G1

  • Christoph Kannicht,
  • Mario Kröning,
  • Barbara A. Solecka-Witulska,
  • Guido Kohla and
  • Julia Rosenlöcher

Prevention and treatment of bleeding in patients suffering from hemophilia A are inconvenient due to repeated intravenous infusions owing to the short half-life of coagulation factor VIII (FVIII) in circulation. Besides (glyco-)pegylation of the FVII...

  • Article
  • Open Access
8 Citations
3,332 Views
15 Pages

Development of Anthocyanin-Rich Gel Beads from Colored Rice for Encapsulation and In Vitro Gastrointestinal Digestion

  • Siriwan Soiklom,
  • Wipada Siri-anusornsak,
  • Krittaya Petchpoung and
  • Wiratchanee Kansandee

4 January 2024

Colored rice anthocyanins are water-soluble natural pigments that can be used as an active ingredient in healthy food and pharmaceutical products. However, anthocyanin utilization is limited because of its instability. This work produced anthocyanin-...

  • Article
  • Open Access
9 Citations
4,963 Views
9 Pages

Efficacy of Irrigation Interval after Anthesis on Grain Quality, Alkali Digestion, and Gel Consistency of Rice

  • Ramin Rayee,
  • Tran Dang Xuan,
  • Tran Dang Khanh,
  • Hoang-Dung Tran and
  • Kakar Kifayatullah

The management of amylose and protein contents and cooking quality are the main challenges in rice macronutrients and quality improvement. This experiment was conducted to examine the rice grain quality, alkali digestion, and gel consistency response...

  • Article
  • Open Access
1 Citations
1,851 Views
18 Pages

The Effects of Fermentation Time and the Addition of Blueberry on the Texture Properties and In Vitro Digestion of Whey Protein Gel

  • Xian Liu,
  • Yuxian Wang,
  • Yufeng Shao,
  • Qian Yu,
  • Congcong Tang,
  • Wenqiong Wang and
  • Zhangwei He

The interaction of blueberry and whey protein has strong antioxidant properties and potential antibacterial and anti-aging functions during the fermentation process. In this study, the properties of fermented gels derived from whey protein mixed with...

  • Article
  • Open Access
29 Citations
5,502 Views
14 Pages

26 December 2021

In this study, emulsion gel beads for loading quercetin were prepared through an emulsification/gelation process using whey protein isolate (WPI) and pectin. Emulsion gel beads’ properties were investigated by different pectin content. Addition...

  • Article
  • Open Access
2 Citations
1,871 Views
14 Pages

16 December 2024

With an increasing number of people pursuing a healthy diet, people have gradually realized the significance of adequate dietary fiber in their diets. In this experiment, wheat bran was collected from eight regions in China with different longitudes...

  • Article
  • Open Access
44 Citations
4,402 Views
20 Pages

This study investigated the effect of gel structure on the digestion of heat-set whey protein emulsion gels containing capsaicinoids (CAP), including the bioaccessibility of CAP. Upon heat treatment at 90 °C, whey protein emulsion gels containing CAP...

  • Article
  • Open Access
243 Views
18 Pages

Gel Characteristics and Digestion of Composite Protein Emulsion-Filled Gels with Varying Soy and Whey Protein Ratios in the Matrix

  • Qiuyan Liu,
  • Georgina Benewaa Yeboah,
  • Sen Wang,
  • Haowei Zhang,
  • Juan Wu,
  • Qingling Wang and
  • Yu Cheng

31 December 2025

The effect of mixed soy and whey protein in the matrix on properties and digestion characteristics of emulsion-filled gels was investigated. Different matrix protein concentrations (8–14%) with a composite soy and whey protein (SW) ratio of 5:5...

  • Communication
  • Open Access
2 Citations
2,154 Views
8 Pages

Texture and Digestion Properties Based on Amylose Content and Gel Consistency in Landraces and Recently-Released Cultivars of Indica Rice in China

  • Min Huang,
  • Jiaxin Xie,
  • Jiaxin Chen,
  • Chunrong Zhao,
  • Chengjing Liao,
  • Beilei Li,
  • Ao Shu,
  • Jiana Chen and
  • Fangbo Cao

31 August 2022

China has abundant rice landrace resources and has developed many new rice cultivars over the past several decades. To identify the differences in texture and digestion properties between landraces and recently-released cultivars of indica rice in Ch...

  • Article
  • Open Access
6 Citations
3,135 Views
16 Pages

Effect of Inulin and Psyllium Husk Powder on Gel Properties and In Vitro Digestion of Hypophthalmichthys molitrix and Argopecten irradians Blended Surimi

  • Wenhao Geng,
  • Miaomiao Tian,
  • Xinyue Zhang,
  • Maodong Song,
  • Xinru Fan,
  • Meng Li,
  • Yongsheng Ma,
  • Soottawat Benjakul and
  • Qiancheng Zhao

20 November 2024

Dietary fiber is crucial in enhancing the nutritional and textural properties of surimi-based products. This study investigated blended surimi produced from silver carp and bay scallops, with the addition of different amounts (0%, 0.5%, 1%, 2%, and 3...

  • Article
  • Open Access
1,539 Views
17 Pages

25 November 2024

The oral bioavailability of curcumin is inherently low, which significantly limits its application in food systems. The objective of this study was to evaluate the impact of high-pressure processing on the stability and bioaccessibility of curcumin w...