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24 Results Found

  • Review
  • Open Access
102 Citations
17,692 Views
18 Pages

13 January 2023

Non-small cell lung cancers (NSCLC) harboring activating mutations of the epidermal growth factor receptor (EGFR) are treated with specific tyrosine kinase inhibitors (EGFR-TKIs) of this receptor, resulting in clinically responses that can generally...

(This article belongs to the Section Cancer Therapy)
  • Article
  • Open Access
52 Citations
11,427 Views
13 Pages

Microbial biofilm systems are defined as interface-associated microorganisms embedded into a self-produced matrix. The extracellular matrix represents a continuous challenge in terms of characterization and analysis. The tools applied in more detaile...

(This article belongs to the Special Issue The Biofilm Matrix)
  • Article
  • Open Access
6 Citations
9,340 Views
16 Pages

The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis Workflow

  • Daniele Mercatelli,
  • Nicola Balboni,
  • Francesca De Giorgio,
  • Emanuela Aleo and ,
  • Caterina Garone and
  • Federico Manuel Giorgi
  • + 1 author+ 0 author

Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) is a recently established multimodal single cell analysis technique combining the immunophenotyping capabilities of antibody labeling and cell sorting with the resolution of si...

(This article belongs to the Section Omics and High Throughput)
  • Review
  • Open Access
2 Citations
5,237 Views
19 Pages

Advancements in Hematopoietic Stem Cell Therapy: From Biological Pathways to Emerging Therapeutic Strategies

  • Viviana Cortiana,
  • Harshal Chorya,
  • Rabab Hunaid Abbas,
  • Jade Gambill and ,
  • Adhith Theyver,
  • Chandler H. Park and
  • Yan Leyfman
  • + 2 authors+ 0 author

Hematopoietic stem cell (HSC) therapy remains essential in treating blood disorders, autoimmune diseases, neurodegenerative conditions, and cancers. Despite its potential, challenges arise from the inherent heterogeneity of HSCs and the complexity of...

  • Review
  • Open Access
10 Citations
9,636 Views
19 Pages

21 December 2023

In various biological contexts, cells receive signals and stimuli that prompt them to change their current state, leading to transitions into a future state. This change underlies the processes of development, tissue maintenance, immune response, and...

  • Review
  • Open Access
2 Citations
642 Views
18 Pages

Resolving Sub-Nuclear Architecture from Compartments to Functional Domains

  • Margherita Cavallo,
  • Adel Diaf,
  • Gloria Milanesi,
  • Marco Biggiogera and
  • Claudio Casali

The cell nucleus is a highly dynamic and complex organelle that orchestrates fundamental cellular processes through its spatial organization. Far from being merely the repository of genetic information, it acts as a regulatory hub whose architecture...

(This article belongs to the Special Issue DNA, Chromatin and Genome Structure)
  • Article
  • Open Access
3,851 Views
15 Pages

Bulk RNA Barcode Sequencing Reveals Role of RNA Splicing in Aging Dermal Stem Cell Modulation by a Botanical Extract

  • Julia Baumann,
  • Valentine Vocat,
  • Kathrin Nowak,
  • Fred Zülli and ,
  • Chennakesava Cuddapah and
  • Franziska Wandrey
  • + 1 author+ 0 author

27 September 2024

Skin aging is a complex, multifaceted process influenced by both intrinsic and extrinsic factors. Understanding the molecular mechanisms underlying skin aging is crucial for developing effective anti-aging strategies. Dermal stem cells play a pivotal...

(This article belongs to the Special Issue Current and Future Trends in Cosmetics Research: The 10th Anniversary of Cosmetics)
  • Review
  • Open Access
7 Citations
3,921 Views
16 Pages

Decoding Molecular Network Dynamics in Cells: Advances in Multiplexed Live Imaging of Fluorescent Biosensors

  • Qiaowen Chen,
  • Yichu Xu,
  • Jhen-Wei Wu,
  • Jr-Ming Yang and
  • Chuan-Hsiang Huang

17 September 2025

Genetically encoded fluorescent protein (FP)-based biosensors have revolutionized cell biology research by enabling real-time monitoring of molecular activities in live cells with exceptional spatial and temporal resolution. Multiplexed biosensing ad...

(This article belongs to the Special Issue Cell-Based Biosensors for Rapid Detection and Monitoring (2nd Edition))
  • Article
  • Open Access
13 Citations
6,551 Views
15 Pages

Improved SNV Discovery in Barcode-Stratified scRNA-seq Alignments

  • Prashant N. M.,
  • Hongyu Liu,
  • Christian Dillard,
  • Helen Ibeawuchi and ,
  • Turkey Alsaeedy,
  • Hang Chan and
  • Anelia Dafinova Horvath
  • + 2 authors+ 0 author

30 September 2021

Currently, the detection of single nucleotide variants (SNVs) from 10 x Genomics single-cell RNA sequencing data (scRNA-seq) is typically performed on the pooled sequencing reads across all cells in a sample. Here, we assess the gaining of informatio...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Review
  • Open Access
1 Citations
1,423 Views
25 Pages

29 May 2026

In situ hybridization (ISH) has undergone a rapid evolution from a low-throughput histological staining technique to a diverse family of modern methods for sensitive, specific and multiplexed molecular detection in intact cells and tissues, and to a...

(This article belongs to the Section Technologies and Resources for Genetics)
  • Article
  • Open Access
12 Citations
6,116 Views
25 Pages

Integration of Multiple Platforms for the Analysis of Multifluorescent Marking Technology Applied to Pediatric GBM and DIPG

  • Giulia Pericoli,
  • Stefania Petrini,
  • Ezio Giorda,
  • Roberta Ferretti and ,
  • Maria Antonietta Ajmone-Cat,
  • Will Court,
  • Libenzio Adrian Conti,
  • Roberta De Simone,
  • Paola Bencivenga and
  • Maria Vinci
  • + 12 authors+ 7 authors

15 September 2020

The intratumor heterogeneity represents one of the most difficult challenges for the development of effective therapies to treat pediatric glioblastoma (pGBM) and diffuse intrinsic pontine glioma (DIPG). These brain tumors are composed of heterogeneo...

(This article belongs to the Special Issue Multi-Modal and Molecular Imaging of Cellular Microenvironment and Tissue Development)
  • Communication
  • Open Access
22 Citations
9,058 Views
12 Pages

Design and Construction of a Focused DNA-Encoded Library for Multivalent Chromatin Reader Proteins

  • Justin M. Rectenwald,
  • Shiva Krishna Reddy Guduru,
  • Zhao Dang,
  • Leonard B. Collins and ,
  • Yi-En Liao,
  • Jacqueline L. Norris-Drouin,
  • Stephanie H. Cholensky,
  • Kyle W. Kaufmann,
  • Scott M. Hammond and
  • Kenneth H. Pearce
  • + 7 authors+ 2 authors

22 February 2020

Chromatin structure and function, and consequently cellular phenotype, is regulated in part by a network of chromatin-modifying enzymes that place post-translational modifications (PTMs) on histone tails. These marks serve as recruitment sites for ot...

(This article belongs to the Section Chemical Biology)
  • Review
  • Open Access
37 Citations
11,018 Views
20 Pages

Advances of Single-Cell Protein Analysis

  • Lixing Liu,
  • Deyong Chen,
  • Junbo Wang and
  • Jian Chen

20 May 2020

Proteins play a significant role in the key activities of cells. Single-cell protein analysis provides crucial insights in studying cellular heterogeneities. However, the low abundance and enormous complexity of the proteome posit challenges in analy...

(This article belongs to the Special Issue Single Cell Analysis)
  • Article
  • Open Access
17 Citations
6,308 Views
25 Pages

8 June 2022

Synthesized astaxanthin (ASX), stereoisomers of 3S,3′R, 3R,3′R, and 3S,3′S, have over 95% market share and have relatively poor antioxidant and bioactivity properties, with persistent issues in terms of biological functions, health...

(This article belongs to the Topic Advances in Environmental Biotechnology (AEB))
  • Review
  • Open Access
25 Citations
8,089 Views
37 Pages

Pyruvate Substitutions on Glycoconjugates

  • Fiona F. Hager,
  • Leander Sützl,
  • Cordula Stefanović,
  • Markus Blaukopf and
  • Christina Schäffer

5 October 2019

Glycoconjugates are the most diverse biomolecules of life. Mostly located at the cell surface, they translate into cell-specific “barcodes” and offer a vast repertoire of functions, including support of cellular physiology, lifestyle, and...

(This article belongs to the Special Issue Carbohydrate-Active Enzymes: Structure, Activity and Reaction Products)
  • Article
  • Open Access
11 Citations
5,163 Views
17 Pages

High-Content and High-Throughput Clonogenic Survival Assay Using Fluorescence Barcoding

  • Haibin Qian,
  • Selami Baglamis,
  • Fumei Redeker,
  • Julia Raaijman and ,
  • Ron A. Hoebe,
  • Vivek M. Sheraton,
  • Louis Vermeulen and
  • Przemek M. Krawczyk
  • + 3 authors+ 0 author

28 September 2023

The Clonogenic Survival Assay (CSA) is a fundamental tool employed to assess cell survival and proliferative potential in cancer research. Despite its importance, CSA faces limitations, primarily its time- and labor-intensive nature and its binary ou...

(This article belongs to the Section Methods and Technologies Development)
  • Article
  • Open Access
4 Citations
5,294 Views
14 Pages

Microfluidic Single-Cell Proteomics Assay Chip: Lung Cancer Cell Line Case Study

  • Yugyung Jung,
  • Minkook Son,
  • Yu Ri Nam,
  • Jongchan Choi and ,
  • James R. Heath and
  • Sung Yang
  • + 1 author+ 0 author

23 September 2021

Cancer is a dynamic disease involving constant changes. With these changes, cancer cells become heterogeneous, resulting in varying sensitivity to chemotherapy. The heterogeneity of cancer cells plays a key role in chemotherapy resistance and cancer...

(This article belongs to the Special Issue Micro/Nanofluidic Devices for Single Cell Analysis, Volume III)
  • Communication
  • Open Access
6 Citations
3,877 Views
9 Pages

Preliminary Single-Cell RNA-Sequencing Analysis Uncovers Adipocyte Heterogeneity in Lipedema

  • Andrea Pagani,
  • Dominik Duscher,
  • Sally Kempa,
  • Mojtaba Ghods and
  • Lukas Prantl

13 June 2024

Background: Despite its increasing incidence and prevalence throughout Western countries, lipedema continues to be a very enigmatic disease, often misunderstood or misdiagnosed by the medical community and with an intrinsic pathology that is difficul...

(This article belongs to the Section Tissues and Organs)
  • Review
  • Open Access
17 Citations
5,970 Views
29 Pages

Neurodegenerative diseases (NDDs) such as Alzheimer’s, Parkinson’s, ALS, and Huntington’s pose a growing global challenge due to their complex pathobiology and aging demographics. Once considered as cellular debris, small extracellu...

(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
  • Article
  • Open Access
23 Citations
4,295 Views
12 Pages

Primary Driver Mutations in GTF2I Specific to the Development of Thymomas

  • Rumi Higuchi,
  • Taichiro Goto,
  • Yosuke Hirotsu,
  • Yujiro Yokoyama and ,
  • Takahiro Nakagomi,
  • Sotaro Otake,
  • Kenji Amemiya,
  • Toshio Oyama,
  • Hitoshi Mochizuki and
  • Masao Omata
  • + 5 authors+ 0 author

24 July 2020

Thymomas are rare mediastinal tumors that are difficult to treat and pose a major public health concern. Identifying mutations in target genes is vital for the development of novel therapeutic strategies. Type A thymomas possess a missense mutation i...

(This article belongs to the Special Issue Precision Medicine in Solid Tumors)
  • Article
  • Open Access
7 Citations
3,399 Views
16 Pages

Mechanisms of Foreign Body Response Mitigation by Nitric Oxide Release

  • James B. Taylor,
  • Maggie J. Malone-Povolny,
  • Elizabeth P. Merricks,
  • Lauren E. Wimsey and ,
  • Daniel Soliman,
  • Timothy C. Nichols,
  • Shannon M. Wallet,
  • Robert Maile and
  • Mark H. Schoenfisch
  • + 4 authors+ 0 author

1 October 2022

Implantable glucose biosensors provide real-time information about blood glucose fluctuations, but their utility and accuracy are time-limited due to the foreign body response (FBR) following their insertion beneath the skin. The slow release of nitr...

(This article belongs to the Section Molecular Biology)
  • Article
  • Open Access
2,640 Views
16 Pages

10 February 2025

(1) Background: Single-cell multi-omics is a powerful method for the dissection and detection of complicated immunologic functions and synapses. However, most currently available technologies merge datasets of different omics from separate portions o...

  • Article
  • Open Access
14 Citations
6,715 Views
17 Pages

Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure

  • Maria Moreno-Villanueva,
  • Ye Zhang,
  • Alan Feiveson,
  • Brandon Mistretta and ,
  • Yinghong Pan,
  • Sujash Chatterjee,
  • Winston Wu,
  • Ryan Clanton,
  • Mayra Nelman-Gonzalez and
  • Honglu Wu
  • + 8 authors+ 3 authors

Detrimental health consequences from exposure to space radiation are a major concern for long-duration human exploration missions to the Moon or Mars. Cellular responses to radiation are expected to be heterogeneous for space radiation exposure, wher...

(This article belongs to the Special Issue Adaptation of Living Organisms in Space: From Mammals to Plants)
  • Article
  • Open Access
23 Citations
5,477 Views
28 Pages

Raman Spectroscopy Spectral Fingerprints of Biomarkers of Traumatic Brain Injury

  • Georgia Harris,
  • Clarissa A. Stickland,
  • Matthias Lim and
  • Pola Goldberg Oppenheimer

8 November 2023

Traumatic brain injury (TBI) affects millions of people of all ages around the globe. TBI is notoriously hard to diagnose at the point of care, resulting in incorrect patient management, avoidable death and disability, long-term neurodegenerative com...

(This article belongs to the Section Cellular Neuroscience)