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576 Results Found

  • Feature Paper
  • Article
  • Open Access
2,871 Views
12 Pages

Effect of Hydrated Ionic Liquid on Photocycle and Dynamics of Photoactive Yellow Protein

  • Utana Umezaki,
  • Miu Hatakenaka,
  • Kana Onodera,
  • Hiroto Mizutani,
  • Suhyang Kim,
  • Yusuke Nakasone,
  • Masahide Terazima and
  • Yoshifumi Kimura

28 July 2021

The mechanism by which proteins are solvated in hydrated ionic liquids remains an open question. Herein, the photoexcitation dynamics of photoactive yellow protein dissolved in hydrated choline dihydrogen phosphate (Hy[ch][dhp]) were studied by trans...

  • Article
  • Open Access
518 Views
15 Pages

Human Serum Albumin: 3D Insight on Protein Hydration

  • Marina V. Fedotova and
  • Sergey E. Kruchinin

18 December 2025

Human serum albumin (HSA) is one of the main proteins in human blood plasma and serves as a molecular “taxi” transporting various compounds, including organic compounds, drugs, metal ions, etc., through the circulatory system throughout t...

  • Article
  • Open Access
8 Citations
3,141 Views
20 Pages

Protein 3D Hydration: A Case of Bovine Pancreatic Trypsin Inhibitor

  • Sergey E. Kruchinin,
  • Ekaterina E. Kislinskaya,
  • Gennady N. Chuev and
  • Marina V. Fedotova

26 November 2022

Characterization of the hydrated state of a protein is crucial for understanding its structural stability and function. In the present study, we have investigated the 3D hydration structure of the protein BPTI (bovine pancreatic trypsin inhibitor) by...

  • Review
  • Open Access
3 Citations
2,844 Views
44 Pages

28 November 2024

Water exists in the beginning and hydrates all matter. Life emerged in water, requiring three essential components in compartmentalized spaces: (1) universal energy sources driving biochemical reactions and processes, (2) molecules that store, encode...

  • Article
  • Open Access
7 Citations
4,170 Views
34 Pages

16 January 2022

The mechanism by which arthropods (e.g., spiders and many insects) can produce silk fibres from an aqueous protein (fibroin) solution has remained elusive, despite much scientific investigation. In this work, we used several techniques to explore the...

  • Review
  • Open Access
8 Citations
8,336 Views
26 Pages

7 August 2012

Discovering the mechanism that controls the three-dimensional structures of proteins, which are closely related to their biological functions, remains a challenge in modern biological science, even for small proteins. From a thermodynamic viewpoint,...

  • Feature Paper
  • Article
  • Open Access
4 Citations
2,351 Views
12 Pages

4 January 2023

We report the results of a computational study of the mechanism of the light-induced chemical reaction of chromophore hydration in the fluorescent protein Dreiklang, responsible for its switching from the fluorescent ON-state to the dark OFF-state. W...

  • Article
  • Open Access
22 Citations
18,319 Views
15 Pages

Soy Protein Containing Isoflavones Improves Facial Signs of Photoaging and Skin Hydration in Postmenopausal Women: Results of a Prospective Randomized Double-Blind Controlled Trial

  • Julianne Rizzo,
  • Mildred Min,
  • Sarah Adnan,
  • Nasima Afzal,
  • Jessica Maloh,
  • Cindy J. Chambers,
  • Vivien Fam and
  • Raja K. Sivamani

23 September 2023

Preliminary findings from multiple studies indicate that dietary intake of soy-derived isoflavones exert beneficial effects on the skin including defense against oxidant damage, stimulation of collagen synthesis, and increased hydration. This study a...

  • Article
  • Open Access
2 Citations
2,094 Views
16 Pages

Low-Entropy Hydration Shells at the Spike RBD’s Binding Site May Reveal the Contagiousness of SARS-CoV-2 Variants

  • Lin Yang,
  • Shuai Guo,
  • Chengyu Hou,
  • Shenda Jiang,
  • Liping Shi,
  • Xiaoliang Ma,
  • Bing Zheng,
  • Yi Fang,
  • Lin Ye and
  • Xiaodong He

7 November 2023

The infectivity of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is primarily determined by the binding affinity between the receptor-binding domain (RBD) of the spike protein and the angiotensin-converting enzyme 2 (ACE2) receptor...

  • Article
  • Open Access
9 Citations
3,568 Views
21 Pages

Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions

  • Aneta Panuszko,
  • Maciej Pieloszczyk,
  • Anna Kuffel,
  • Karol Jacek,
  • Karol A. Biernacki,
  • Sebastian Demkowicz,
  • Janusz Stangret and
  • Piotr Bruździak

28 August 2021

The biology and chemistry of proteins and peptides are inextricably linked with water as the solvent. The reason for the high stability of some proteins or uncontrolled aggregation of others may be hidden in the properties of their hydration water. I...

  • Article
  • Open Access
11 Citations
5,244 Views
16 Pages

5 September 2021

The dynamics of protein–water fluctuations are of biological significance. Molecular dynamics simulations were performed in order to explore the hydration dynamics of staphylococcal nuclease (SNase) at different temperatures and mutation levels. A dy...

  • Article
  • Open Access
10 Citations
4,710 Views
15 Pages

Novel Therapeutic Agent against Platelet Activation In Vitro and Arterial Thrombosis In Vivo by Morin Hydrate

  • Chih-Wei Hsia,
  • Ming-Ping Wu,
  • Marappan Velusamy,
  • Chih-Hsuan Hsia,
  • Duen-Suey Chou,
  • Cheng-Lin Tsai,
  • Chia-Yuan Hsu,
  • Thanasekaran Jayakumar,
  • Chi-Li Chung and
  • Joen-Rong Sheu

Morin hydrate, a bioactive flavonoid, has been proven to prevent inflammation and apoptosis of cells. Flavonoids can reduce the risk of cardiovascular diseases, in which platelet activation plays a major role. This study investigated the effect of mo...

  • Article
  • Open Access
2 Citations
2,950 Views
10 Pages

The amount of bonds between constituting parts of a protein aggregate were determined in wild type (WT) and A53T α-synuclein (αS) oligomers, amyloids and in the complex of thymosin-β4–cytoplasmic domain of stabilin-2 (Tβ4-stabilin CTD). A53T αS aggre...

  • Article
  • Open Access
126 Views
12 Pages

20 January 2026

This article investigates the thermodynamic driving force of the interaction between lysozyme (Lys) and sulfated β-cyclodextrin (β-CDS), with a particular emphasis on the elusive role of hydration during polyelectrolyte–protein bindin...

  • Article
  • Open Access
8 Citations
3,051 Views
16 Pages

WT and A53T α-Synuclein Systems: Melting Diagram and Its New Interpretation

  • Mónika Bokor,
  • Ágnes Tantos,
  • Péter Tompa,
  • Kyou-Hoon Han and
  • Kálmán Tompa

The potential barriers governing the motions of α-synuclein (αS) variants’ hydration water, especially energetics of them, is in the focus of the work. The thermodynamical approach yielded essential information about distributions a...

  • Review
  • Open Access
3 Citations
2,733 Views
15 Pages

23 January 2023

Incoherent inelastic and quasi-elastic neutron scattering (INS) and terahertz time-domain spectroscopy (THz-TDS) are spectroscopy methods that directly detect molecular dynamics, with an overlap in the measured energy regions of each method. Due to t...

  • Article
  • Open Access
8 Citations
6,572 Views
13 Pages

Comparison of Whey Versus Almond Protein Powder on Nitrogen Balance in Female College Students; The California Almond Protein Powder Project (CAlmond-P3)

  • Adeline Maykish,
  • Morgan M. Nishisaka,
  • Courtney K. Talbott,
  • Scott K. Reaves,
  • Aleksandra S. Kristo and
  • Angelos K. Sikalidis

Plant-based diets have become increasingly popular in the past decade, with approximately 11% of Americans self-identifying as vegan or vegetarian and many others trying to reduce meat consumption. Due to increasing interest, the plant-based food mar...

  • Article
  • Open Access
1 Citations
4,548 Views
16 Pages

Dynamic Nutrition Strategies for Anorexia Nervosa: Marker-Based Integration of Calories and Proteins

  • Eugenia Dozio,
  • Martina Alonge,
  • Gianluca Tori,
  • Andrea Caumo,
  • Rina Giuseppa Russo,
  • Edoardo Scuttari,
  • Leonardo Fringuelli and
  • Ileana Terruzzi

31 January 2025

Background/Objectives: Anorexia nervosa (AN) is a severe psychiatric disorder characterized by profound nutritional deficits and significant alterations in body composition, cellular integrity, and hydration. Nutritional rehabilitation is critical no...

  • Article
  • Open Access
12 Citations
2,933 Views
14 Pages

Protein Hydration in a Bioprotecting Mixture

  • Silvia Corezzi,
  • Brenda Bracco,
  • Paola Sassi,
  • Marco Paolantoni and
  • Lucia Comez

22 September 2021

We combined broad-band depolarized light scattering and infrared spectroscopies to study the properties of hydration water in a lysozyme-trehalose aqueous solution, where trehalose is present above the concentration threshold (30% in weight) relevant...

  • Article
  • Open Access
4 Citations
3,548 Views
12 Pages

12 November 2018

Here we present a novel method for the characterization of the hydration of protein solutions based on measuring and evaluating two-component wide-line 1H NMR signals. We also provide a description of key elements of the procedure conceived for the t...

  • Review
  • Open Access
8 Citations
7,179 Views
13 Pages

Slow Dynamics and Structure of Supercooled Water in Confinement

  • Gaia Camisasca,
  • Margherita De Marzio,
  • Mauro Rovere and
  • Paola Gallo

24 April 2017

We review our simulation results on properties of supercooled confined water. We consider two situations: water confined in a hydrophilic pore that mimics an MCM-41 environment and water at interface with a protein. The behavior upon cooling of the...

  • Article
  • Open Access
23 Citations
5,091 Views
16 Pages

Unfolding and Aggregation of Lysozyme under the Combined Action of Dithiothreitol and Guanidine Hydrochloride: Optical Studies

  • Ruslan M. Sarimov,
  • Vladimir N. Binhi,
  • Tatiana A. Matveeva,
  • Nikita V. Penkov and
  • Sergey V. Gudkov

Using a number of optical techniques (interferometry, dynamic light scattering, and spectroscopy), denaturation of hen egg white lysozyme (HEWL) by treatment with a combination of dithiothreitol (DTT) and guanidine hydrochloride (GdnHCl) has been inv...

  • Review
  • Open Access
53 Citations
12,831 Views
36 Pages

26 September 2012

The great wealth of different surface sensitive techniques used in biosensing, most of which claim to measure adsorbed mass, can at first glance look unnecessary. However, with each technique relying on a different transducer principle there is somet...

  • Review
  • Open Access
13 Citations
3,915 Views
13 Pages

28 November 2021

Reductive radical stress represents the other side of the redox spectrum, less studied but equally important compared to oxidative stress. The reactivity of hydrogen atoms (H•) and hydrated electrons (e–aq) connected with peptides/proteins...

  • Review
  • Open Access
66 Citations
7,346 Views
21 Pages

30 November 2018

The biological activity of proteins depends on their three-dimensional structure, known as the native state. The main force driving the correct folding mechanism is the hydrophobic effect and when this folding kinetics is altered, aggregation phenome...

  • Article
  • Open Access
22 Citations
4,768 Views
16 Pages

Fatty Acid-Binding Protein 4—An “Inauspicious” Adipokine—In Serum and Urine of Post-Partum Women with Excessive Gestational Weight Gain and Gestational Diabetes Mellitus

  • Żaneta Kimber-Trojnar,
  • Jolanta Patro-Małysza,
  • Marcin Trojnar,
  • Katarzyna E. Skórzyńska-Dziduszko,
  • Jacek Bartosiewicz,
  • Jan Oleszczuk and
  • Bożena Leszczyńska-Gorzelak

2 December 2018

The exact roles of adipokines in the pathogenesis of type 2 diabetes and obesity are still unclear. The aim of the study was to evaluate fatty acid binding protein 4 (FABP4) concentrations in the serum and urine of women with excessive gestational we...

  • Article
  • Open Access
1 Citations
1,570 Views
21 Pages

Proteins and their surrounding hydration water engage in a dynamic interplay that is critical for maintaining structural stability and functional integrity. However, the intricate coupling between protein dynamics and the structural order of hydratio...

  • Article
  • Open Access
787 Views
21 Pages

Effects of Different Dual-Modified Jujube Juicing Residue Dietary Fibers on the Properties of Egg Protein Gels Induced by Alkalinity and Heat

  • Xinyu Zheng,
  • Ling Dang,
  • Yichan Zhang,
  • Xinyu Liu,
  • Hui Wang,
  • Yajun Zheng,
  • Xinling Song,
  • Zhihui Wei,
  • Jiayao Zhang and
  • Xiaoyang Guo

27 May 2025

Egg protein gels have relatively poor water-holding capacity, hardness, and freeze–thaw properties. Jujube juicing residue dietary fiber (JJRDF) is available, but it is rarely used in the food industry because of its poor hydration properties....

  • Article
  • Open Access
5 Citations
2,944 Views
27 Pages

25 March 2022

NADPH-cytochrome P450 reductase (CPR) from Sorghum bicolor (SbCPR) serves as an electron donor for cytochrome P450 essential for monolignol and lignin production in this biofuel crop. The CPR enzymes undergo an ample conformational transition between...

  • Article
  • Open Access
3 Citations
2,581 Views
11 Pages

Osmolytes Modulate Photoactivation of Phytochrome: Probing Protein Hydration

  • Jens Balke,
  • Paula Díaz Gutiérrez,
  • Timm Rafaluk-Mohr,
  • Jonas Proksch,
  • Beate Koksch and
  • Ulrike Alexiev

18 August 2023

Phytochromes are bistable red/far-red light-responsive photoreceptor proteins found in plants, fungi, and bacteria. Light-activation of the prototypical phytochrome Cph1 from the cyanobacterium Synechocystis sp. PCC 6803 allows photoisomerization of...

  • Article
  • Open Access
3 Citations
2,279 Views
16 Pages

Photoactive Yellow Protein Adsorption at Hydrated Polyethyleneimine and Poly-l-Glutamic Acid Interfaces

  • Szilvia Krekic,
  • Mark Mero,
  • Michel Kuhl,
  • Kannan Balasubramanian,
  • András Dér and
  • Zsuzsanna Heiner

Chiral and achiral vibrational sum-frequency generation (VSFG) spectroscopy was performed in the 1400–1700 and 2800–3800 cm−1 range to study the interfacial structure of photoactive yellow protein (PYP) adsorbed on polyethyleneimine...

  • Article
  • Open Access
1 Citations
2,148 Views
22 Pages

Effect of Plant Protein Ingredients at a Range of Pre-Hydration Levels on Technological Properties of Hybrid Beef Patties

  • Zuo Song,
  • Joseph P. Kerry,
  • Rahel Suchintita Das,
  • Brijesh K. Tiwari,
  • Antonia Santos and
  • Ruth M. Hamill

25 August 2025

Hybrid plant and meat (HPM) products, in which a portion of meat is substituted with alternative plant protein-containing ingredients, offer a promising option for flexitarian consumers seeking to increase plant protein consumption while continuing t...

  • Article
  • Open Access
18 Citations
5,175 Views
25 Pages

Flexibility and Hydration of Amphiphilic Hyperbranched Arabinogalactan-Protein from Plant Exudate: A Volumetric Perspective

  • Verónica Mejia Tamayo,
  • Michaël Nigen,
  • Rafael Apolinar-Valiente,
  • Thierry Doco,
  • Pascale Williams,
  • Denis Renard and
  • Christian Sanchez

Plant Acacia gum exudates are composed by glycosylated hydroxyproline-rich proteins, which have a high proportion of heavily branched neutral and charged sugars in the polysaccharide moiety. These hyperbranched arabinogalactan-proteins (AGP) display...

  • Article
  • Open Access
8 Citations
3,749 Views
16 Pages

7 October 2020

We report results on the translational dynamics of the hydration water of the lysozyme protein upon cooling obtained by means of molecular dynamics simulations. The self van Hove functions and the mean square displacements of hydration water show two...

  • Article
  • Open Access
7 Citations
2,610 Views
15 Pages

17 November 2022

In recent years, thermophoresis has emerged as a promising tool for quantifying biomolecular interactions. The underlying microscopic physical effect is still not understood, but often attributed to changes in the hydration layer once the binding occ...

  • Article
  • Open Access
1 Citations
2,874 Views
13 Pages

Hydration Status of Geriatric Patients Is Associated with Changes in Plasma Proteome, Especially in Proteins Involved in Coagulation

  • Laura Hoen,
  • Daniel Pfeffer,
  • Johannes R. Schmidt,
  • Johannes Kraft,
  • Janosch Hildebrand and
  • Stefan Kalkhof

30 August 2023

Due to multifactorial reasons, such as decreased thirst and decreased total body water, elderly patients are vulnerable to dehydration. The study aims to investigate whether moderate dehydration or hyperhydration affects the blood proteome. Blood sam...

  • Article
  • Open Access
27 Citations
23,325 Views
16 Pages

The Beverage Hydration Index: Influence of Electrolytes, Carbohydrate and Protein

  • Mindy Millard-Stafford,
  • Teresa K. Snow,
  • Michael L. Jones and
  • HyunGyu Suh

25 August 2021

The beverage hydration index (BHI) facilitates a comparison of relative hydration properties of beverages using water as the standard. The additive effects of electrolytes, carbohydrate, and protein on rehydration were assessed using BHI. Nineteen he...

  • Article
  • Open Access
7 Citations
14,221 Views
15 Pages

16 June 2018

The popular modern diet, characterized by an excess of animal protein and salt but insufficient in fruits, vegetables and water, is a poor fit for human physiological and homeostatic regulatory systems. Sustained net acid and sodium retention, couple...

  • Article
  • Open Access
8 Citations
6,584 Views
16 Pages

The Effect of High Protein Powder Structure on Hydration, Glass Transition, Water Sorption, and Thermomechanical Properties

  • Valentyn A. Maidannyk,
  • David J. McSweeney,
  • Sharon Montgomery,
  • Valeria L. Cenini,
  • Barry M. G. O’Hagan,
  • Lucille Gallagher,
  • Song Miao and
  • Noel A. McCarthy

21 January 2022

Poor solubility of high protein milk powders can be an issue during the production of nutritional formulations, as well as for end-users. One possible way to improve powder solubility is through the creation of vacuoles and pores in the particle stru...

  • Perspective
  • Open Access
8 Citations
3,383 Views
15 Pages

20 October 2023

Protein aggregation is the etiopathogenesis of the three most profound vision-threatening eye diseases: age-related cataract, presbyopia, and age-related macular degeneration. This perspective organizes known information on ATP and protein aggregatio...

  • Article
  • Open Access
1 Citations
2,733 Views
15 Pages

Hydration Dynamics of Model Peptides with Different Hydrophobic Character

  • Laura Lupi,
  • Brenda Bracco,
  • Paola Sassi,
  • Silvia Corezzi,
  • Assunta Morresi,
  • Daniele Fioretto,
  • Lucia Comez and
  • Marco Paolantoni

12 April 2022

The multi-scale dynamics of aqueous solutions of the hydrophilic peptide N-acetyl-glycine-methylamide (NAGMA) have been investigated through extended frequency-range depolarized light scattering (EDLS), which enables the broad-band detection of colle...

  • Article
  • Open Access
35 Citations
5,150 Views
13 Pages

Accelerated CO2 Hydration with Thermostable Sulfurihydrogenibium azorense Carbonic Anhydrase-Chitin Binding Domain Fusion Protein Immobilised on Chitin Support

  • Juan Hou,
  • Xingkang Li,
  • Michal B. Kaczmarek,
  • Pengyu Chen,
  • Kai Li,
  • Peng Jin,
  • Yuanmei Liang and
  • Maurycy Daroch

Carbonic anhydrases (CAs) represent a group of enzymes that catalyse important reactions of carbon dioxide hydration and dehydration, a reaction crucial to many biological processes and environmental biotechnology. In this study we successfully const...

  • Feature Paper
  • Article
  • Open Access
43 Citations
5,810 Views
15 Pages

Fractal Silver Dendrites as 3D SERS Platform for Highly Sensitive Detection of Biomolecules in Hydration Conditions

  • Maria José Lo Faro,
  • Cristiano D’Andrea,
  • Antonio Alessio Leonardi,
  • Dario Morganti,
  • Alessia Irrera and
  • Barbara Fazio

16 November 2019

In this paper, we report on the realization of a highly sensitive and low cost 3D surface-enhanced Raman scattering (SERS) platform. The structural features of the Ag dendrite network that characterize the SERS material were exploited, attesting a re...

  • Review
  • Open Access
40 Citations
27,136 Views
27 Pages

4 February 2022

Soccer is a high intensity intermittent sport, featuring critical events completed at high/maximal intensity which is superimposed onto an aerobic base of lower intensity activities and rest. Due to these varying energic demands and the duration of c...

  • Review
  • Open Access
10 Citations
4,851 Views
18 Pages

What Is a 2021 Reference Body?

  • Manfred J. Müller,
  • Anja Bosy-Westphal,
  • Wiebke Braun,
  • Michael C. Wong,
  • John A. Shepherd and
  • Steven B. Heymsfield

6 April 2022

The historical 1975 Reference Man is a ‘model’ that had been used as a basis for the calculation of radiation doses, metabolism, pharmacokinetics, sizes for organ transplantation and ergonomic optimizations in the industry, e.g., to plan...

  • Article
  • Open Access
7 Citations
3,292 Views
16 Pages

Transportan 10 Induces Perturbation and Pores Formation in Giant Plasma Membrane Vesicles Derived from Cancer Liver Cells

  • Sara Anselmo,
  • Giuseppe Sancataldo,
  • Concetta Baiamonte,
  • Giuseppe Pizzolanti and
  • Valeria Vetri

7 March 2023

Continuous progress has been made in the development of new molecules for therapeutic purposes. This is driven by the need to address several challenges such as molecular instability and biocompatibility, difficulties in crossing the plasma membrane,...

  • Article
  • Open Access
6 Citations
3,392 Views
23 Pages

In Silico Binding of 2-Aminocyclobutanones to SARS-CoV-2 Nsp13 Helicase and Demonstration of Antiviral Activity

  • Thahani S. Habeeb Mohammad,
  • Yash Gupta,
  • Cory T. Reidl,
  • Vlad Nicolaescu,
  • Haley Gula,
  • Ravi Durvasula,
  • Prakasha Kempaiah and
  • Daniel P. Becker

The landscape of viral strains and lineages of SARS-CoV-2 keeps changing and is currently dominated by Delta and Omicron variants. Members of the latest Omicron variants, including BA.1, are showing a high level of immune evasion, and Omicron has bec...

  • Review
  • Open Access
1 Citations
2,700 Views
9 Pages

9 January 2023

The solvent-excluded volume effect is an under-appreciated general phenomenon occurring in liquids and playing a fundamental role in many cases. It is quantified and characterized by means of the theoretical concept of cavity creation and its Gibbs f...

  • Article
  • Open Access
5 Citations
3,739 Views
27 Pages

Escherichia coli Biofilm Formation, Motion and Protein Patterns on Hyaluronic Acid and Polydimethylsiloxane Depend on Surface Stiffness

  • Annabelle Vigué,
  • Dominique Vautier,
  • Amad Kaytoue,
  • Bernard Senger,
  • Youri Arntz,
  • Vincent Ball,
  • Amine Ben Mlouka,
  • Varvara Gribova,
  • Samar Hajjar-Garreau and
  • Lydie Ploux
  • + 3 authors

11 November 2022

The surface stiffness of the microenvironment is a mechanical signal regulating biofilm growth without the risks associated with the use of bioactive agents. However, the mechanisms determining the expansion or prevention of biofilm growth on soft an...

  • Feature Paper
  • Article
  • Open Access
24 Citations
7,480 Views
14 Pages

Fish-Derived Antifreeze Proteins and Antifreeze Glycoprotein Exhibit a Different Ice-Binding Property with Increasing Concentration

  • Sakae Tsuda,
  • Akari Yamauchi,
  • N. M.-Mofiz Uddin Khan,
  • Tatsuya Arai,
  • Sheikh Mahatabuddin,
  • Ai Miura and
  • Hidemasa Kondo

9 March 2020

The concentration of a protein is highly related to its biochemical properties, and is a key determinant for its biotechnological applications. Antifreeze proteins (AFPs) and antifreeze glycoproteins (AFGPs) are structurally diverse macromolecules th...

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