Journal Description
Liquids
Liquids
is an international, peer-reviewed, open access journal on all aspects of liquid material research published quarterly online by MDPI.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within AGRIS, and other databases.
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 27.7 days after submission; acceptance to publication is undertaken in 13.9 days (median values for papers published in this journal in the first half of 2024).
- Recognition of Reviewers: APC discount vouchers, optional signed peer review, and reviewer names published annually in the journal.
Latest Articles
Polar-Twisted, Nano-Modulated Nematics: Form Chirality and Physical Properties
Liquids 2024, 4(4), 768-781; https://doi.org/10.3390/liquids4040043 - 26 Nov 2024
Abstract
Recently, two new polymorphs have been added to the nematic class: the polar-twisted nematic (NPT) in 2016 and the ferroelectric nematic (NF) in 2020. Comprised of achiral molecules, both exhibit local polar ordering and adopt modulated structures, right- and
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Recently, two new polymorphs have been added to the nematic class: the polar-twisted nematic (NPT) in 2016 and the ferroelectric nematic (NF) in 2020. Comprised of achiral molecules, both exhibit local polar ordering and adopt modulated structures, right- and left-handed helical organizations—form chirality—albeit on vastly different dimensional scales; modulations have a ~10 nanometer pitch in the NPT and ~500 nm in the NF. Here, we focus on the structure and symmetries of the NPT phase and the ensuing physical properties. Based on an array of order parameters that fully describe the molecular ordering and the nano-modulations thereof, we present a consistent formulation of the dielectric, optical, surface anchoring, and elasticity properties of the NPT materials. We show that these properties are distinctly different from those associated with an elastically modulated, locally uniaxial, nematic.
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(This article belongs to the Section Molecular Liquids)
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Overview of Typical Projects for Geological Storage of CO2 in Offshore Saline Aquifers
by
Lintao Li, Yuming Liu, Yanzun Li, Ziyi Wang, Kai Guo, Qianli Ma, Yingying Cui, Kaibang Liu and Cong Chen
Liquids 2024, 4(4), 744-767; https://doi.org/10.3390/liquids4040042 - 26 Nov 2024
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With the continuous growth of global energy demand, greenhouse gas emissions are also rising, leading to serious challenges posed by climate change. Carbon Capture, Utilization, and Storage (CCUS) technology is considered one of the key pathways to mitigate climate change. Among the CCUS
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With the continuous growth of global energy demand, greenhouse gas emissions are also rising, leading to serious challenges posed by climate change. Carbon Capture, Utilization, and Storage (CCUS) technology is considered one of the key pathways to mitigate climate change. Among the CCUS technologies, CO2 storage in offshore saline aquifers has gained significant attention in recent years. This paper conducts an in-depth analysis of the Sleipner and Snøhvit projects in Norway and the Tomakomai project in Japan, exploring key issues related to the application, geological characteristics, injection strategies, monitoring systems, and simulation methods of CO2 storage in offshore saline aquifers. This study finds that CO2 storage in offshore saline aquifers has high safety and storage potential but faces several challenges in practical applications, such as geological reservoir characteristics, technological innovation, operational costs, and social acceptance. Therefore, it is necessary to further strengthen technological innovation and policy support to promote the development and application of CO2 storage in offshore saline aquifers. This study provides valuable experiences and insights for similar projects worldwide, contributing to the sustainable development of CO2 storage in offshore saline aquifers and making a greater contribution to achieving global net-zero emission targets.
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Interactions of Laser-Induced Thermal Plume with Liquid–Air Interfaces in Straight-Chain Alcohols
by
Reese W. Anderson, Allison I. Anderson, Mark W. Gealy and Darin J. Ulness
Liquids 2024, 4(4), 732-743; https://doi.org/10.3390/liquids4040041 - 22 Nov 2024
Abstract
This study investigates the dynamics of thermal plumes interacting with the liquid–air interface in straight-chain alcohols and their mixtures using a photothermal imaging technique based on thermal lensing. This method enables the indirect measurement of temperature gradients via changes in refractive index caused
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This study investigates the dynamics of thermal plumes interacting with the liquid–air interface in straight-chain alcohols and their mixtures using a photothermal imaging technique based on thermal lensing. This method enables the indirect measurement of temperature gradients via changes in refractive index caused by localized laser heating. Employing a collimated laser beam, the results show the formation and evolution of cylindrical heated zones and their interactions with the liquid–air interface. The study reveals that, while some alcohols exhibit stable surface behaviors, others demonstrate complex dynamical behaviors, including strong stable steady-state oscillations. The findings contribute to understanding fluid dynamics in molecular liquids near their liquid–air interfaces.
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(This article belongs to the Special Issue Energy Transfer in Liquids)
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A Machine Learning Free Energy Functional for the 1D Reference Interaction Site Model: Towards Prediction of Solvation Free Energy for All Solvent Systems
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Jonathan G. M. Conn, Abdullah Ahmad and David S. Palmer
Liquids 2024, 4(4), 710-731; https://doi.org/10.3390/liquids4040040 - 8 Nov 2024
Abstract
Understanding the interactions between solutes and solvents is vital in many areas of the chemical sciences. Solvation free energy (SFE) is an important thermodynamic property in characterising molecular solvation and so accurate prediction of this property is sought after. The One-Dimensional Reference Interaction
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Understanding the interactions between solutes and solvents is vital in many areas of the chemical sciences. Solvation free energy (SFE) is an important thermodynamic property in characterising molecular solvation and so accurate prediction of this property is sought after. The One-Dimensional Reference Interaction Site Model (RISM) is a well-established method for modelling solvation, but it is known to yield large errors in the calculation of SFE. In this work, we show that a single machine learning free energy functional for RISM can accurately model solvation thermodynamics in multiple solvents. A convolutional neural network is trained on solvation free energy density functions calculated by RISM for small organic molecules in approximately 100 different solvent systems. We achieve an average RMSE of 1.41 kcal/mol and an of 0.89 across all solvent systems. We also compare the performance for the most and least commonly represented solvents and show that higher accuracy is generally seen with higher volumes of data, with RMSE values of 0.69–1.29 kcal/mol and values of 0.78–0.97 for solvents with more than 50 data points. We have shown that machine learning can greatly improve solvation free energy predictions in RISM, while demonstrating that the methodology is generalisable across solvent systems. This represents a significant step towards a universal machine learning SFE functional for RISM.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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On the Diffusion of Anti-Tuberculosis Drugs in Cyclodextrin-Containing Aqueous Solutions
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M. Melia Rodrigo, Ana M. T. D. P. V. Cabral, Sónia I. G. Fangaia, Afonso C. Nogueira, Artur J. M. Valente, Ana C. F. Ribeiro and Miguel A. Esteso
Liquids 2024, 4(4), 702-709; https://doi.org/10.3390/liquids4040039 - 12 Oct 2024
Abstract
In this work, we propose a comprehensive experimental study of the diffusion of isoniazid, one of the first-line anti-tuberculosis drugs, in combination with another drug (ethambutol dihydrochloride) and with different cyclodextrins as carrier molecules, for facilitated transport and enhanced solubility. For that, ternary
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In this work, we propose a comprehensive experimental study of the diffusion of isoniazid, one of the first-line anti-tuberculosis drugs, in combination with another drug (ethambutol dihydrochloride) and with different cyclodextrins as carrier molecules, for facilitated transport and enhanced solubility. For that, ternary mutual diffusion coefficients measured by the Taylor dispersion method (D11, D22, D12, and D21) are determined for aqueous solutions containing isoniazid and different cyclodextrins (that is, α–CD, β–CD, and γ–CD) at 298.15 K. From the significant effect of the presence of these carbohydrates on the diffusion of this drug, interactions between these components are suggested. Support for this arose from models, which shows that these effects may be due to the formation of 1:1 (CDs:isoniazid) complexes.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Thermodynamic Properties of Two Cinnamate Derivatives with Flavor and Fragrance Features
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Vera L. S. Freitas, Carlos A. O. Silva and Maria D. M. C. Ribeiro da Silva
Liquids 2024, 4(4), 689-701; https://doi.org/10.3390/liquids4040038 - 11 Oct 2024
Abstract
The standard molar enthalpies of formation in the liquid phase for ethyl (E)-cinnamate and ethyl hydrocinnamate, two cinnamate derivatives with notable flavor and fragrance characteristics, were determined experimentally using combustion calorimetry in an oxygen atmosphere. To derive the gas-phase enthalpies of
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The standard molar enthalpies of formation in the liquid phase for ethyl (E)-cinnamate and ethyl hydrocinnamate, two cinnamate derivatives with notable flavor and fragrance characteristics, were determined experimentally using combustion calorimetry in an oxygen atmosphere. To derive the gas-phase enthalpies of formation for these derivatives, their enthalpies of vaporization were measured using a high-temperature Calvet microcalorimeter and the vacuum drop microcalorimetric technique. Additionally, a computational analysis employing the G3(MP2)//B3LYP composite method was conducted to calculate the gas-phase standard enthalpies of formation at T = 298.15 K for both compounds. These findings enabled a detailed assessment and analysis of the structural and energetic effects of the vinyl and ethane moieties between the phenyl and carboxylic groups in the studied compounds. Considering the structural features of ethyl (E)-cinnamate and ethyl hydrocinnamate, a gas-phase enthalpy of hydrogenation analysis was conducted to explore their energetic profiles more thoroughly.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Quantum Chemical (QC) Calculations and Linear Solvation Energy Relationships (LSER): Hydrogen-Bonding Calculations with New QC-LSER Molecular Descriptors
by
Costas Panayiotou
Liquids 2024, 4(4), 663-688; https://doi.org/10.3390/liquids4040037 - 4 Oct 2024
Abstract
A new method, based on quantum chemical calculations, is proposed for the thermodynamically consistent reformulation of QSPR-type Linear Free-Energy Relationship (LFER) models. This reformulation permits the extraction of valuable information on intermolecular interactions and its transfer in other LFER-type models, in acidity/basicity scales,
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A new method, based on quantum chemical calculations, is proposed for the thermodynamically consistent reformulation of QSPR-type Linear Free-Energy Relationship (LFER) models. This reformulation permits the extraction of valuable information on intermolecular interactions and its transfer in other LFER-type models, in acidity/basicity scales, or even in equation-of-state models. New molecular descriptors of electrostatic interactions are derived from the distribution of molecular surface charges obtained from COSMO-type quantum chemical calculations. The widely used and very successful Abraham’s Linear Solvation Energy Relationship (LSER) model is selected as the reference LSER model for the calculations in solute–solvent systems as well as in solute self-solvation. Hydrogen-bonding free energies, enthalpies, and entropies are now derived for a variety of common solutes. The capacity of the method to address the role of conformational changes in solvation quantities is discussed. The perspectives of the LSER model with the implementation of the new descriptors are also discussed.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Effect of Intramolecular Hydrogen Bond Formation on the Abraham Model Solute Descriptors for Oxybenzone
by
Jocelyn Chen, Audrey Chen, Yixuan Yang and William E. Acree
Liquids 2024, 4(3), 647-662; https://doi.org/10.3390/liquids4030036 - 16 Sep 2024
Cited by 1
Abstract
Solute descriptors derived from experimental solubility data for oxybenzone dissolved in 21 different organic solvents indicate that the hydrogen atom on the hydroxyl functional group forms an intramolecular hydrogen bond with the lone electron pair on the oxygen atom of the neighboring >C=O
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Solute descriptors derived from experimental solubility data for oxybenzone dissolved in 21 different organic solvents indicate that the hydrogen atom on the hydroxyl functional group forms an intramolecular hydrogen bond with the lone electron pair on the oxygen atom of the neighboring >C=O functional group. Group contribution methods developed for estimating the Abraham model solute descriptors from the molecule’s Canonical SMILES code significantly over-estimate the Abraham model’s hydrogen bond acidity solute descriptor of oxybenzone. An informed user-modified Canonical SMILES code is proposed to identify which hydrogen atoms are involved in intramolecular H-bond formation. The identified hydrogen atom(s) can be used to define a new functional/fragment group and numerical group contribution value.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Nanoheterogeneity in Protic and Aprotic Alkylimidazolium Bistriflimide Ionic Liquids
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Timur I. Magsumov and Igor A. Sedov
Liquids 2024, 4(3), 632-646; https://doi.org/10.3390/liquids4030035 - 15 Sep 2024
Abstract
Many ionic liquids, including alkylimidazolium salts, form a nanoheterogeneous structure with polar and apolar domains in their liquid phase. Using molecular dynamics simulations, the influence of the structure of the cations of a series of aprotic ([CnC1Im][TFSI], [Cn
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Many ionic liquids, including alkylimidazolium salts, form a nanoheterogeneous structure with polar and apolar domains in their liquid phase. Using molecular dynamics simulations, the influence of the structure of the cations of a series of aprotic ([CnC1Im][TFSI], [CnCnIm][TFSI]) and protic ([HCnIm][TFSI]) alkylimidazolium bistrilimides on the domain structure of their liquid phase was studied. The characteristic sizes of domains and the extent of domain segregation in different liquids have been compared. It has been shown that the latter, but not the former, is a key factor determining the magnitude of the Gibbs free energy of cavity formation in nanostructured ionic liquids, which in turn governs their solvation properties.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Calculation of Hydrogen Bonding Enthalpy Using the Two-Parameter Abraham Equation
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Boris N. Solomonov, Mansur B. Khisamiev and Mikhail I. Yagofarov
Liquids 2024, 4(3), 624-631; https://doi.org/10.3390/liquids4030034 - 6 Sep 2024
Abstract
In this work, an approach to the calculation of hydrogen bonding enthalpies is proposed. It employs the correlation proposed by M.H. Abraham, establishing the connection between the equilibrium constant (KHB) and acidity ( ) and basicity (
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In this work, an approach to the calculation of hydrogen bonding enthalpies is proposed. It employs the correlation proposed by M.H. Abraham, establishing the connection between the equilibrium constant (KHB) and acidity ( ) and basicity ( ) parameters: log KHB = 7.354 · · − 1.099. Hydrogen bonding enthalpy (ΔHBH) is found using the compensation relationship with Gibbs energy (ΔHBG): ΔHBG = 0.66 · ΔHBH + 2.5 kJ·mol−1. This relationship enables the calculation of the enthalpy, Gibbs energy and entropy of hydrogen bonding. The validity of this approach was tested against 122 experimental hydrogen bonding enthalpies values available from the literature. The root mean square deviation and average deviation equaled 1.6 kJ·mol−1 and 0.5 kJ·mol−1, respectively.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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On the Solute-Induced Structure-Making/Breaking Phenomena: Myths, Verities, and Misuses in Solvation Thermodynamics
by
Ariel A. Chialvo
Liquids 2024, 4(3), 592-623; https://doi.org/10.3390/liquids4030033 - 3 Sep 2024
Abstract
We review the statistical mechanic foundations of the fundamental structure-making/breaking functions, leading to the rigorous description of the solute-induced perturbation of the solvent environment for the understanding of the solvation process of any species regardless of the type and nature of the
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We review the statistical mechanic foundations of the fundamental structure-making/breaking functions, leading to the rigorous description of the solute-induced perturbation of the solvent environment for the understanding of the solvation process of any species regardless of the type and nature of the solute–solvent interactions. Then, we highlight how these functions are linked to unambiguous thermodynamic responses resulting from changes in state conditions, composition, and solute–solvent intermolecular interaction asymmetries. Finally, we identify and illustrate the pitfalls behind the use of surrogate approaches to structure-making/breaking markers, including those based on Jones–Dole’s B-coefficient and Hepler’s isobaric-thermal expansivity, while highlighting their ambiguities and lack of consistency and the sources of misinterpretations.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Vaporisation Thermodynamics: Are Triazolium Ionic Liquids a Real Alternative to Popular Imidazolium-Based Ionic Liquids?
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Sergey P. Verevkin and Dzmitry H. Zaitsau
Liquids 2024, 4(3), 581-591; https://doi.org/10.3390/liquids4030032 - 20 Aug 2024
Cited by 1
Abstract
New experimental vapour pressures and vaporisation enthalpies of the ionic liquids [2,4-dimethyl-1,2,4-triazolium][NTf2], [2-methyl-4-ethyl-1,2,4-triazolium][NTf2], and [2-ethyl-4-methyl-1,2,4-triazolium][NTf2] were measured using the Langmuir method in combination with the quartz crystal microbalance. New experimental vapour pressures and vaporisation enthalpies of the
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New experimental vapour pressures and vaporisation enthalpies of the ionic liquids [2,4-dimethyl-1,2,4-triazolium][NTf2], [2-methyl-4-ethyl-1,2,4-triazolium][NTf2], and [2-ethyl-4-methyl-1,2,4-triazolium][NTf2] were measured using the Langmuir method in combination with the quartz crystal microbalance. New experimental vapour pressures and vaporisation enthalpies of the molecular liquids 1H-1,2,4-triazole, 1-methyl-1,2,4-triazole, 1-ethyl-1,2,4-triazole, and 1H-1,2,3-triazole were measured using the transpiration method. Structure–property relationships between molecular and ionic liquids were studied. These results will facilitate chemical engineering calculations of processes involving ILs.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Ab Initio Investigation of the Hydration of the Tetrahedral d0 Transition Metal Oxoanions NbO43−, TaO43−, CrO42−, MoO42−, WO42−, MnO4−, TcO4−, ReO4−, and of FeO4, RuO4, and OsO4
by
Barbara L. Goodall, Jane P. Ferguson and Cory C. Pye
Liquids 2024, 4(3), 539-580; https://doi.org/10.3390/liquids4030031 - 16 Aug 2024
Abstract
The geometries and vibrational frequencies of various configurations of XO4m−(H2O)n, X = Fe, Ru, Os, m = 0; X = Mn, Tc, Re, m = 1; X = Cr, Mo, W, m = 2; and X
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The geometries and vibrational frequencies of various configurations of XO4m−(H2O)n, X = Fe, Ru, Os, m = 0; X = Mn, Tc, Re, m = 1; X = Cr, Mo, W, m = 2; and X = Nb, Ta, m = 3; n = 0–6 are calculated at various levels up to MP2/6-31+G* and B3LYP/6-31+G*. These properties are studied as a function of increasing cluster size. The experimental and theoretical bond distances and vibrational spectra are compared where available, and predictions are made where they are not.
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(This article belongs to the Special Issue Hydration of Ions in Aqueous Solution)
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Solvation Enthalpies and Free Energies for Organic Solvents through a Dense Neural Network: A Generalized-Born Approach
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Sergei F. Vyboishchikov
Liquids 2024, 4(3), 525-538; https://doi.org/10.3390/liquids4030030 - 12 Aug 2024
Abstract
A dense artificial neural network, ESE-ΔH-DNN, with two hidden layers for calculating both solvation free energies ΔG°solv and enthalpies ΔH°solv for neutral solutes in organic solvents is proposed. The input features are generalized-Born-type monatomic and pair electrostatic
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A dense artificial neural network, ESE-ΔH-DNN, with two hidden layers for calculating both solvation free energies ΔG°solv and enthalpies ΔH°solv for neutral solutes in organic solvents is proposed. The input features are generalized-Born-type monatomic and pair electrostatic terms, the molecular volume, and atomic surface areas of the solute, as well as five easily available properties of the solvent. ESE-ΔH-DNN is quite accurate for ΔG°solv, with an RMSE (root mean square error) below 0.6 kcal/mol and an MAE (mean absolute error) well below 0.4 kcal/mol. It performs particularly well for alkane, aromatic, ester, and ketone solvents. ESE-ΔH-DNN also exhibits a fairly good accuracy for ΔH°solv prediction, with an RMSE below 1 kcal/mol and an MAE of about 0.6 kcal/mol.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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AbraLlama: Predicting Abraham Model Solute Descriptors and Modified Solvent Parameters Using Llama
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Andrew S. I. D. Lang and Youngmin Lee
Liquids 2024, 4(3), 518-524; https://doi.org/10.3390/liquids4030029 - 2 Aug 2024
Cited by 3
Abstract
This study explores the application of fine-tuned large language models for predicting physicochemical properties, specifically focusing on Abraham model solute descriptors (E, S, A, B, V) and modified solvent parameters (e0, s0, a0, b0, v
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This study explores the application of fine-tuned large language models for predicting physicochemical properties, specifically focusing on Abraham model solute descriptors (E, S, A, B, V) and modified solvent parameters (e0, s0, a0, b0, v0). By leveraging ChemLLaMA, a specialized version of the LLaMA model for cheminformatics tasks, we developed the AbraLlama-Solvent and AbraLlama-Solute models using curated datasets of experimentally derived solute descriptors and solvent parameters. Our findings demonstrate that AbraLlama-Solvent and AbraLlama-Solute predict modified solvent parameters and solute descriptors with high accuracy, comparable to existing methods. The AbraLlama-Solvent model shows varying prediction accuracy across different solvents, influenced by their position within the chemical space, while the AbraLlama-Solute model consistently predicts solute descriptors with high accuracy. Both models are available as applications on Hugging Face, facilitating easy predictions from SMILES strings. This research highlights the potential of LLMs in chemistry applications, offering practical tools for solvent comparison and expanding the applicability of Abraham solvation equations to a broader range of organic solvents.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Unprecedented High Probe-Reported Polarity of Deep Eutectic Solvents Composed of Lanthanide Salts and Urea
by
Anushis Patra, Vaishali Khokhar and Siddharth Pandey
Liquids 2024, 4(3), 505-517; https://doi.org/10.3390/liquids4030028 - 18 Jul 2024
Abstract
Deep eutectic solvents (DESs) have emerged as viable alternatives to toxic organic solvents. The most intriguing aspect of these solvents is perhaps the widely varying physicochemical properties emerging from the changes in the constituents that form DESs along with their composition. Based on
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Deep eutectic solvents (DESs) have emerged as viable alternatives to toxic organic solvents. The most intriguing aspect of these solvents is perhaps the widely varying physicochemical properties emerging from the changes in the constituents that form DESs along with their composition. Based on the constituents, a DES can be hydrophilic/polar or hydrophobic/non-polar, rendering a vastly varying spectrum of polarity a possibility. DESs formed by mixing urea (U) with hydrated lanthanide salts, lanthanum nitrate hexahydrate (La : U), cerium nitrate hexahydrate (Ce : U), and gadolinium nitrate hexahydrate (Gd : U), respectively, exhibit very high polarity as manifested via the probe-reported empirical parameters of dipolarity/polarizability (π*). The highest π* of 1.70 exhibited by the DES (Gd : U) in a 1 : 2 molar ratio is unprecedented. The π* ranges from 1.50 to 1.70 for these DESs, which is almost the highest reported for any solvent system. The π* decreases with an increasing amount of urea in the DES; however, the anomalous trends in H-bond donating acidity (α) and H-bond accepting basicity (β) appear to be due to the hydrated water of the lanthanide salt. The emission band maxima of the fluorescence probe of the “effective” dielectric constant (εeff) of the solubilizing media, pyrene-1-carboxaldehyde (PyCHO), in salt-rich DESs reflect higher cybotactic region dipolarity than that offered by water. Probe Nile red aggregates readily in these DESs to form non-fluorescent H-aggregates, which is a characteristic of highly polar solvents. The behavior of probe pyranine also corroborates these outcomes as the (lanthanide salt : urea) DES system supports the formation of the deprotonated form of the probe in the excited state. The (lanthanide salt : urea) DES system offers solubilizing media of exceptionally high polarity, which is bound to expand their application potential.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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A Benchmark Test of High-Throughput Atomistic Modeling for Octa-Acid Host–Guest Complexes
by
Xiaohui Wang, Zhe Huai, Lei Zheng, Meili Liu and Zhaoxi Sun
Liquids 2024, 4(3), 485-504; https://doi.org/10.3390/liquids4030027 - 10 Jul 2024
Abstract
Years of massive applications of high-throughput atomistic modeling tools such as molecular docking and end-point free energy calculations in the drug industry and academic exploration have made them indispensable parts of hierarchical screening. While the similarities between host–guest and protein–ligand complexes lead to
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Years of massive applications of high-throughput atomistic modeling tools such as molecular docking and end-point free energy calculations in the drug industry and academic exploration have made them indispensable parts of hierarchical screening. While the similarities between host–guest and protein–ligand complexes lead to the direct extension of techniques for protein–ligand screening to host–guest systems, the practical performance of these hit identification tools remains unclear in host-–-guest binding. Recent reports on specific host–guest complexes suggest that the experience on the accuracy ladder accumulated from protein–ligand cases could be invalid in host–guest complexes, which makes it an urgent need to perform a systematic benchmark to secure solid numerical supports and guidance of practical setups. Concerning molecular docking, there still lacks a comprehensive benchmark considering popular docking programs. As for end-point reranking, quantitative and rigorous free energy estimation via end-point formulism requires establishing statistically meaningful measurements of uncertainties due to finite sampling, which is neglected or underestimated by a significant portion in almost all main-stream applications. Further, a face-to-face comparison between different screening tools is required for the design of a hierarchical workflow. To fill the above-mentioned critical gaps, in this work, using a dataset containing tens of host–guest complexes involving basket-like macromolecular hosts from the octa acid family, we extensively benchmark seven academic docking protocols and perform post-docking end-point rescoring with twenty protocols. The resulting comprehensive benchmark provides conclusive pictures of the practical value of docking and end-point screening in OA host–guest binding.
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(This article belongs to the Special Issue Solubility and Solubilization of Drugs: Modeling and Thermodynamic Analysis)
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Abraham General Solvation Parameter Model: Predictive Expressions for Solute Transfer into Isobutyl Acetate
by
Ramya Motati, Trisha Kandi, Jilawan Francis, Jocelyn Chen, Emily Yao, Saikiran Motati, Audrey Chen, Dhishithaa Kumarandurai, Nikita Shanmugam and William E. Acree, Jr.
Liquids 2024, 4(3), 470-484; https://doi.org/10.3390/liquids4030026 - 1 Jul 2024
Cited by 3
Abstract
Mole fraction of solubilities are reported for the: o-acetoacetanisidide, anthracene, benzoin, 4-tert-butylbenzoic acid, 3-chlorobenzoic acid, 3-chlorobenzoic acid, 2-chloro-5-nitrobenzoic acid, 4-chloro-3-nitrobenzoic acid, 3,4-dichlorobenzoic acid, 2,3-dimethoxybenzoic acid, 3,4-dimethoxybenzoic acid, 3,5-dimethoxybenzoic acid, 3,5-dinitrobenzoic acid, diphenyl sulfone, 2-ethylanthraquinone, 2-methoxybenzoic acid, 4-methoxybenzoic acid, 2-methylbenzoic acid,
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Mole fraction of solubilities are reported for the: o-acetoacetanisidide, anthracene, benzoin, 4-tert-butylbenzoic acid, 3-chlorobenzoic acid, 3-chlorobenzoic acid, 2-chloro-5-nitrobenzoic acid, 4-chloro-3-nitrobenzoic acid, 3,4-dichlorobenzoic acid, 2,3-dimethoxybenzoic acid, 3,4-dimethoxybenzoic acid, 3,5-dimethoxybenzoic acid, 3,5-dinitrobenzoic acid, diphenyl sulfone, 2-ethylanthraquinone, 2-methoxybenzoic acid, 4-methoxybenzoic acid, 2-methylbenzoic acid, 3-methylbenzoic acid, 2-methyl-3-nitrobenzoic acid, 3-methyl-4-nitrobenzoic acid, 4-methyl-3-nitrobenzoic acid, 2-naphthoxyacetic acid, 3-nitrobenzoic acid, 4-nitrobenzoic acid, salicylamide, thioxanthene-9-one, 3,4,5-trimethoxybenzoic acid, and xanthene dissolved in isobutyl acetate at 298.15 K. The results of our experimental measurements, combined with the published literature data, were used to obtain Abraham model equations for isobutyl acetate. The mathematical correlations presented in the current study describe the observed molar solubility ratios of the solutes dissolved in isobutyl acetate to within an overall standard deviation of 0.12 log units or less.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Vaporization Enthalpies and Vapor Pressures of 5α-Androstane and 5α-Cholestane by Correlation Gas Chromatography
by
Christian Fischer-Lodike, Mohammad Albinsaad and James S. Chickos
Liquids 2024, 4(3), 456-469; https://doi.org/10.3390/liquids4030025 - 27 Jun 2024
Cited by 1
Abstract
Vaporization enthalpies and vapor pressures of 5α-androstane and 5α-cholestane are reported using correlation gas chromatography (CGC). The results for 5α-cholestane are compared to both estimated and experimental values reported previously for 5α-cholestane. The results are generally in agreement with the literature within the
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Vaporization enthalpies and vapor pressures of 5α-androstane and 5α-cholestane are reported using correlation gas chromatography (CGC). The results for 5α-cholestane are compared to both estimated and experimental values reported previously for 5α-cholestane. The results are generally in agreement with the literature within the reported uncertainties. A simple method for reducing the amount of curvature in logarithm plots of vapor pressures as a function of K/T when using n-alkanes as standards in CGC experiments is also reported. This may prove useful in evaluating vapor pressures of rigid hydrocarbons at high temperatures.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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Dissolution Thermodynamics and Preferential Solvation of Phenothiazine in Some Aqueous Cosolvent Systems
by
Fleming Martínez, María Ángeles Peña and Abolghasem Jouyban
Liquids 2024, 4(2), 443-455; https://doi.org/10.3390/liquids4020024 - 20 Jun 2024
Abstract
Published equilibrium mole fraction solubilities of phenothiazine in ethanol, propylene glycol and water as mono-solvents at several temperatures were investigated to find standard apparent thermodynamic quantities of dissolution mixing and solvation based on the van’t Hoff and Gibbs equations. Further, by processing the
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Published equilibrium mole fraction solubilities of phenothiazine in ethanol, propylene glycol and water as mono-solvents at several temperatures were investigated to find standard apparent thermodynamic quantities of dissolution mixing and solvation based on the van’t Hoff and Gibbs equations. Further, by processing the reported mole fraction solubility values of phenothiazine in some aqueous cosolvent mixtures at T/K = 298.2, the inverse Kirkwood–Buff integrals treatment demonstrated preferential hydration of phenothiazine in water-rich mixtures and preferential solvation of this agent by cosolvents in mixtures of 0.24 < x1 < 1.00 in the {ethanol (1) + water (2)} mixed system and mixtures of 0.18 < x1 < 1.00 in the {propylene glycol (1) + water (2)} mixed system.
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(This article belongs to the Special Issue Recent Advances in the Behavior of Liquids in Honor of Prof. Dr. William Acree Jr.)
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