The behavior of the carbon cycle within the Land-Ocean Aquatic Continuum (LOAC) is shaped not only by aquatic processes but also by chemical interactions occurring at the atmosphere–water interface. In particular, the transport of acid rain precursors such as SO
2 and NO
x to surface waters via deposition can alter the water’s pH balance, thereby affecting Dissolved Inorganic Carbon (DIC) fractions and CO
2 emission potential. In this study, air quality measurements from three monitoring stations (Bosna, Karatay, and Meram) in Konya province of Türkiye, along with precipitation and temperature data from a representative meteorological station for the period 2021–2023, were analyzed using the Mann–Kendall Trend Test. Additionally, seasonal pH values of groundwater were examined, and their trends were compared with those of the other variables. The findings reveal striking differences on a station basis. At the Bosna station, while NO (Z = 10.80), NO
2 (Z = 9.47), and NO
x (Z = 10.04) showed strong increasing trends, O
3 decreased significantly (Z = −15.14). At the Karatay station, significant increasing trends were detected for CO (Z = 10.01), PM
10 (Z = 8.59), SO
2 (Z = 5.55), and NO
x (Z = 2.44), whereas O
3 exhibited a negative trend (Z = −6.54). At the Meram station, a significant decrease was observed in CO (Z = −11.63), while NO
2 showed an increasing trend (Z = 3.03). Analysis of meteorological series indicated no significant trend in precipitation (Z = −0.04), but a distinct increase in temperature (Z = 2.90,
p < 0.01). These findings suggest that the increasing NO
x load in the Konya atmosphere accelerates O
3 consumption and, combined with rising temperatures, creates a potential for change in the carbon chemistry of aquatic systems. The results demonstrate that atmospheric pollutant trends constitute an indirect but significant pressure factor on the aquatic carbon cycle in semi-arid regions and highlight the necessity of integrating atmospheric processes into carbon budget analyses within the scope of LOAC.
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