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226 Results Found

  • Article
  • Open Access
15 Citations
5,378 Views
21 Pages

Evolution of a Landscape Phage Library in a Mouse Xenograft Model of Human Breast Cancer

  • James W. Gillespie,
  • Liping Yang,
  • Laura Maria De Plano,
  • Murray A. Stackhouse and
  • Valery A. Petrenko

26 October 2019

Peptide-displayed phage libraries are billion-clone collections of diverse chimeric bacteriophage particles, decorated by genetically fused peptides built from a random combination of natural amino acids. Studying the molecular evolution of peptide-d...

  • Review
  • Open Access
2 Citations
3,480 Views
12 Pages

17 October 2025

The rapid emergence of antibiotic-resistant bacteria requires solutions that extend beyond conventional antibiotics. Bacteriophages (phages) provide targeted antibacterial action but face two key limitations: (1) their narrow natural host ranges and...

  • Article
  • Open Access
23 Citations
6,454 Views
14 Pages

Parallel Evolution of Host-Attachment Proteins in Phage PP01 Populations Adapting to Escherichia coli O157:H7

  • Chidiebere Akusobi,
  • Benjamin K. Chan,
  • Elizabeth S.C.P. Williams,
  • John E. Wertz and
  • Paul E. Turner

The emergence of antibiotic resistance has sparked interest in phage therapy, which uses virulent phages as antibacterial agents. Bacteriophage PP01 has been studied for potential bio-control of Escherichia coli O157:H7, its natural host, but in the...

  • Article
  • Open Access
465 Views
18 Pages

The phage-resistant mutant (PRM) strains of Escherichia coli (E. coli) exhibited abundant genetic and phenotypic diversity. IS elements played a vital role in creating various genetic divergences and regulating gene functions under phage infection st...

  • Article
  • Open Access
7 Citations
2,544 Views
32 Pages

Pseudomonas Phage Lydia and the Evolution of the Mesyanzhinovviridae Family

  • Konstantin Troshin,
  • Nina Sykilinda,
  • Sofia Shuraleva,
  • Anna Tokmakova,
  • Nikolay Tkachenko,
  • Lidia Kurochkina,
  • Konstantin Miroshnikov,
  • Natalia Suzina,
  • Ekaterina Brzhozovskaya and
  • Peter Evseev
  • + 2 authors

4 March 2025

Phage Lydia, a newly isolated siphovirus infecting Pseudomonas aeruginosa, was characterized with respect to its basic kinetic properties and subjected to comparative bioinformatic analysis with related phages. The phage exhibited a restricted host r...

  • Article
  • Open Access
1,367 Views
22 Pages

Therapeutic Optimization of Pseudomonas aeruginosa Phages: From Isolation to Directed Evolution

  • Sara Bolognini,
  • Caterina Ferretti,
  • Claudia Campobasso,
  • Elisabetta Trovato,
  • Magda Marchetti,
  • Laura Rindi,
  • Arianna Tavanti and
  • Mariagrazia Di Luca

30 June 2025

Pseudomonas aeruginosa is a major opportunistic pathogen with high levels of antibiotic resistance. Phage therapy represents a promising alternative for the treatment of difficult infections both alone and in combination with antibiotics. Here, we is...

  • Article
  • Open Access
27 Citations
5,609 Views
21 Pages

Promises and Pitfalls of In Vivo Evolution to Improve Phage Therapy

  • James J. Bull,
  • Bruce R. Levin and
  • Ian J. Molineux

21 November 2019

Phage therapy is the use of bacterial viruses (phages) to treat bacterial infections, a medical intervention long abandoned in the West but now experiencing a revival. Currently, therapeutic phages are often chosen based on limited criteria, sometime...

  • Review
  • Open Access
10 Citations
5,677 Views
37 Pages

8 August 2025

Treatments for bacterial infections can be less effective due to toxicities, bacterial tolerance, or genetic resistance to antibacterial agents. The emphasis here is on combating genetic bacterial resistance to bacteriophages. Commonly described simp...

  • Article
  • Open Access
9 Citations
3,084 Views
25 Pages

New Obolenskvirus Phages Brutus and Scipio: Biology, Evolution, and Phage-Host Interaction

  • Peter V. Evseev,
  • Mikhail M. Shneider,
  • Lyubov V. Kolupaeva,
  • Anastasia A. Kasimova,
  • Olga Y. Timoshina,
  • Andrey V. Perepelov,
  • Anna M. Shpirt,
  • Andrey A. Shelenkov,
  • Yulia V. Mikhailova and
  • Anastasia V. Popova
  • + 3 authors

8 February 2024

Two novel virulent phages of the genus Obolenskvirus infecting Acinetobacter baumannii, a significant nosocomial pathogen, have been isolated and studied. Phages Brutus and Scipio were able to infect A. baumannii strains belonging to the K116 and K82...

  • Article
  • Open Access
16 Citations
4,309 Views
16 Pages

26 August 2019

Low performance of actively targeted nanomedicines required revision of the traditional drug targeting paradigm and stimulated the development of novel phage-programmed, self-navigating drug delivery vehicles. In the proposed smart vehicles, targetin...

  • Editorial
  • Open Access
2 Citations
4,324 Views
6 Pages

19 August 2020

Phage biology has been developing for the last hundred years, and the potential of phages as tools and treatments has been known since their early discovery. However, the lack of knowledge of the molecular mechanisms coded in phage genomes hindered t...

  • Article
  • Open Access
1 Citations
3,489 Views
19 Pages

Phage Host Range Expansion Through Directed Evolution on Highly Phage-Resistant Strains of Klebsiella pneumoniae

  • Kevin A. Burke,
  • Tracey L. Peters,
  • Olga A. Kirillina,
  • Caitlin D. Urick,
  • Bertran D. Walton,
  • Jordan T. Bird,
  • Nino Mzhavia,
  • Martin O. Georges,
  • Paphavee Lertsethtakarn and
  • Andrey A. Filippov
  • + 2 authors

Multidrug-resistant (MDR) strains of Klebsiella pneumoniae present an acute threat as they continue to disseminate globally. Phage therapy has shown promise as a powerful approach to combat MDR infections, but narrow phage host ranges make developmen...

  • Article
  • Open Access
40 Citations
8,460 Views
21 Pages

PhaLP: A Database for the Study of Phage Lytic Proteins and Their Evolution

  • Bjorn Criel,
  • Steff Taelman,
  • Wim Van Criekinge,
  • Michiel Stock and
  • Yves Briers

26 June 2021

Phage lytic proteins are a clinically advanced class of novel enzyme-based antibiotics, so-called enzybiotics. A growing community of researchers develops phage lytic proteins with the perspective of their use as enzybiotics. A successful translation...

  • Communication
  • Open Access
12 Citations
4,454 Views
12 Pages

6 August 2019

Cyanophages are characterized by vast genomic diversity and the formation of stable ecotypes over time. The evolution of phage diversity includes vertical processes, such as mutation, and horizontal processes, such as recombination and gene transfer....

  • Article
  • Open Access
17 Citations
6,131 Views
36 Pages

Evolution of Phage Tail Sheath Protein

  • Peter Evseev,
  • Mikhail Shneider and
  • Konstantin Miroshnikov

26 May 2022

Sheath proteins comprise a part of the contractile molecular machinery present in bacteriophages with myoviral morphology, contractile injection systems, and the type VI secretion system (T6SS) found in many Gram-negative bacteria. Previous research...

  • Review
  • Open Access
2 Citations
1,649 Views
37 Pages

30 November 2025

More than a century ago, bacteriophages (phages) were discovered as entities that could both replicate and dramatically reduce bacterial culture turbidities. By the late 1940s, phage impact on broth turbidity was being studied using electronic detect...

  • Article
  • Open Access
3 Citations
2,297 Views
14 Pages

The ideal bacteriophages (phages) for the treatment of bacterial disease (phage therapy) would bypass bacterial evolution to phage resistance. However, this feature (called a hyper-aggression feature) has never been observed to our knowledge. Here, w...

  • Article
  • Open Access
2 Citations
2,284 Views
14 Pages

30 December 2024

Recently, we developed a spatial phage-assisted continuous evolution (SPACE) system. This system utilizes chemotaxis coupled with the growth of motile bacteria during their spatial range expansion in soft agar to provide fresh host cells for iterativ...

  • Article
  • Open Access
772 Views
36 Pages

Genomic, Evolutionary and Phenotypic Insights into Pseudomonas Phage Adele, a Novel Pakpunavirus with Potential for Phage Therapy

  • Andrei V. Chaplin,
  • George A. Skvortsov,
  • Nina N. Sykilinda,
  • Konstantin S. Troshin,
  • Anna A. Vasilyeva,
  • Artem A. Malkov,
  • Maria R. Leont’eva,
  • Konstantin A. Miroshnikov,
  • Mikhail A. Yaitsky and
  • Peter V. Evseev
  • + 4 authors

25 December 2025

Bacteriophages are powerful drivers of microbial evolution and are increasingly explored as alternatives to antibiotics against multidrug-resistant pathogens such as Pseudomonas aeruginosa. Here, we describe the isolation, phenotypic characterization...

  • Article
  • Open Access
665 Views
9 Pages

15 October 2025

Background/Objectives: The bacterium Brochothrix campestris is closely related to Brochothrix thermosphacta, a known food spoilage agent, and Listeria monocytogenes, the causative agent of listeriosis. B. campestris garnered attention several years a...

  • Conference Report
  • Open Access
2,927 Views
10 Pages

“French Phage Network” Annual Conference—Seventh Meeting Report

  • Olivier Schiettekatte,
  • Elsa Beurrier,
  • Luisa De Sordi and
  • Anne Chevallereau

10 February 2023

The French Phage Network (Phages.fr) has continuously grown since its foundation, eight years ago. The annual conference, held at the Institut Pasteur in Paris, attracted 164 participants from the 11th to the 13th of October 2022. Researchers from ac...

  • Article
  • Open Access
2 Citations
5,179 Views
42 Pages

Origin, Evolution and Diversity of φ29-like Phages—Review and Bioinformatic Analysis

  • Peter Evseev,
  • Daria Gutnik,
  • Alena Evpak,
  • Anastasia Kasimova and
  • Konstantin Miroshnikov

9 October 2024

Phage φ29 and related bacteriophages are currently the smallest known tailed viruses infecting various representatives of both Gram-positive and Gram-negative bacteria. They are characterised by genomic content features and distinctive properties...

  • Article
  • Open Access
24 Citations
4,878 Views
27 Pages

Origin and Evolution of Studiervirinae Bacteriophages Infecting Pectobacterium: Horizontal Transfer Assists Adaptation to New Niches

  • Peter V. Evseev,
  • Anna A. Lukianova,
  • Mikhail M. Shneider,
  • Aleksei A. Korzhenkov,
  • Eugenia N. Bugaeva,
  • Anastasia P. Kabanova,
  • Kirill K. Miroshnikov,
  • Eugene E. Kulikov,
  • Stepan V. Toshchakov and
  • Konstantin A. Miroshnikov
  • + 1 author

Black leg and soft rot are devastating diseases causing up to 50% loss of potential potato yield. The search for, and characterization of, bacterial viruses (bacteriophages) suitable for the control of these diseases is currently a sought-after task...

  • Article
  • Open Access
23 Citations
5,768 Views
16 Pages

Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages

  • Patrick A. de Jonge,
  • F. A. Bastiaan von Meijenfeldt,
  • Laura E. van Rooijen,
  • Stan J. J. Brouns and
  • Bas E. Dutilh

21 November 2019

The human gut contains an expanse of largely unstudied bacteriophages. Among the most common are crAss-like phages, which were predicted to infect Bacteriodetes hosts. CrAssphage, the first crAss-like phage to be discovered, contains a protein encodi...

  • Conference Report
  • Open Access
4 Citations
6,581 Views
10 Pages

“French Phage Network”—Second Meeting Report

  • Clara Torres-Barceló,
  • Oliver Kaltz,
  • Rémy Froissart,
  • Sylvain Gandon,
  • Nicolas Ginet and
  • Mireille Ansaldi

21 April 2017

The study of bacteriophages (viruses of bacteria) includes a variety of approaches, such as structural biology, genetics, ecology, and evolution, with increasingly important implications for therapeutic and industrial uses. Researchers working with p...

  • Article
  • Open Access
9 Citations
4,786 Views
13 Pages

Directed Evolution and Engineering of Gallium-Binding Phage Clones—A Preliminary Study

  • Nora Schönberger,
  • Christina Zeitler,
  • Robert Braun,
  • Franziska L. Lederer,
  • Sabine Matys and
  • Katrin Pollmann

The phage surface display technology is a useful tool to screen and to extend the spectrum of metal-binding protein structures provided by nature. The directed evolution approach allows identifying specific peptide ligands for metals that are less ab...

  • Conference Report
  • Open Access
3,375 Views
12 Pages

“French Phage Network” Annual Conference—Fifth Meeting Report

  • Floriane Laumay,
  • Amel Chaïb,
  • Romain Linares and
  • Cécile Breyton

14 April 2020

Attracting about 100 participants, the fifth edition of our French Phages.fr annual conference was once more a success. This year’s conference took place at the Institute for Structural Biology on the European Electron and Photon Campus in Gren...

  • Article
  • Open Access
13 Citations
6,538 Views
9 Pages

Directed Evolution of a Mycobacteriophage

  • María Cebriá-Mendoza,
  • Rafael Sanjuán and
  • Pilar Domingo-Calap

Bacteriophages represent an alternative strategy to combat pathogenic bacteria. Currently, Mycobacterium tuberculosis infections constitute a major public health problem due to extensive antibiotic resistance in some strains. Using a non-pathogenic s...

  • Article
  • Open Access
1,548 Views
20 Pages

Phage Resistance Modulates Escherichia coli B Response to Metal-Based Antimicrobials

  • Franklin C. Ezeanowai,
  • Akamu J. Ewunkem,
  • Ugonna C. Morikwe,
  • Larisa C. Kiki,
  • Lindsey W. McGee,
  • Joseph L. Graves and
  • Liesl K. Jeffers-Francis

18 September 2025

Background/Objective: The rise of multidrug-resistant bacteria underscores the urgent need for alternative antimicrobial strategies. Metal-based compounds and bacteriophage (phage) therapy have emerged as promising candidates, but the evolutionary tr...

  • Article
  • Open Access
5 Citations
4,493 Views
20 Pages

22 February 2022

In this study, we looked at the population dynamics of a two phages-one host system using phages vB_EcoP_SU10 (SU10) and vB_EcoD_SU57 (SU57) and the bacteria Escherichia coli, strain ECOR57. Phage-specific growth curves were observed where infections...

  • Meeting Report
  • Open Access
4,611 Views
9 Pages

18 December 2018

The Spanish Network of Bacteriophages and Transducer Elements (FAGOMA) was created to answer the need of Spanish scientists working on phages to exchange knowledge and find synergies. Seven years and five meetings later, the network has become a frui...

  • Review
  • Open Access
48 Citations
10,029 Views
17 Pages

7 June 2018

The development of phage engineering technology has led to the construction of a novel type of phage display library—a collection of nanofiber materials with diverse molecular landscapes accommodated on the surface of phage particles. These new...

  • Review
  • Open Access
127 Citations
14,201 Views
19 Pages

Phage Therapy with a Focus on the Human Microbiota

  • Sharita Divya Ganeshan and
  • Zeinab Hosseinidoust

Bacteriophages are viruses that infect bacteria. After their discovery in the early 1900s, bacteriophages were a primary cure against infectious disease for almost 25 years, before being completely overshadowed by antibiotics. With the rise of antibi...

  • Article
  • Open Access
5 Citations
3,352 Views
14 Pages

An opportunistic pathogen Pseudomonas aeruginosa has a versatile phenotype and high evolutionary potential to adapt to various natural habitats. As the organism normally lives in spatially heterogeneous and polymicrobial environments from open fields...

  • Review
  • Open Access
8 Citations
3,320 Views
16 Pages

10 February 2024

Prostate cancer (PC) is the second most diagnosed cancer among men. It was observed that early diagnosis of disease is highly beneficial for the survival of cancer patients. Therefore, the extension and increasing quality of life of PC patients can b...

  • Article
  • Open Access
2 Citations
2,687 Views
16 Pages

Molecular Characterization of pBOq-IncQ and pBOq-95LK Plasmids of Escherichia coli BOq 01, a New Isolated Strain from Poultry Farming, Involved in Antibiotic Resistance

  • Armando Hernández-Mendoza,
  • Rosalba Salgado-Morales,
  • Abimael Morán-Vázquez,
  • David López-Torres,
  • Blanca Inés García-Gómez and
  • Edgar Dantán-González

The increase in antimicrobial resistance has raised questions about how to use these drugs safely, especially in veterinary medicine, animal nutrition, and agriculture. Escherichia coli is an important human and animal pathogen that frequently contai...

  • Article
  • Open Access
13 Citations
2,913 Views
22 Pages

Modeling the Directed Evolution of Broad Host Range Phages

  • James J. Bull,
  • Holly A. Wichman and
  • Stephen M. Krone

27 November 2022

Background: The host ranges of individual phages tend to be narrow, yet many applications of phages would benefit from expanded host ranges. Empirical methods have been developed to direct the evolution of phages to attack new strains, but the method...

  • Comment
  • Open Access
1 Citations
712 Views
9 Pages

25 November 2025

Presented here are additional explanations for five key points offered by Rojero et al. in their 2025 publication in this journal, regarding characteristics of hyper-aggressive phage 0524phi7-1. These are (i) that the “bypassing of the evolutio...

  • Review
  • Open Access
20 Citations
7,055 Views
14 Pages

The review uses the Helicobacter pylori, the gastric bacterium that colonizes the human stomach, to address how to obtain information from bacterial genomes about prophage biology. In a time of continuous growing number of genomes available, this rev...

  • Article
  • Open Access
4 Citations
2,993 Views
19 Pages

Evidence of a Set of Core-Function Genes in 16 Bacillus Podoviral Genomes with Considerable Genomic Diversity

  • Ahmed Ismail,
  • Tanuj Saini,
  • Ahmed Al Qaffas,
  • Ivan Erill,
  • Steven M. Caruso,
  • Louise Temple and
  • Allison A. Johnson

18 January 2023

Bacteriophage genomes represent an enormous level of genetic diversity and provide considerable potential to acquire new insights about viral genome evolution. In this study, the genome sequences of sixteen Bacillus-infecting bacteriophages were expl...

  • Article
  • Open Access
3 Citations
3,019 Views
23 Pages

Bacteria and phages are two of the most abundant biological entities in the gut microbiome, and diet and host phylogeny are two of the most critical factors influencing the gut microbiome. A stable gut bacterial community plays a pivotal role in the...

  • Article
  • Open Access
2 Citations
2,552 Views
13 Pages

New Genera and Species of Caulobacter and Brevundimonas Bacteriophages Provide Insights into Phage Genome Evolution

  • Bert Ely,
  • Michael Hils,
  • Aaron Clarke,
  • Maegan Albert,
  • Nadia Holness,
  • Jacob Lenski and
  • Tannaz Mohammadi

20 April 2024

Previous studies have identified diverse bacteriophages that infect Caulobacter vibrioides strain CB15 ranging from small RNA phages to four genera of jumbo phages. In this study, we focus on 20 bacteriophages whose genomes range from 40 to 60 kb in...

  • Article
  • Open Access
2 Citations
1,803 Views
24 Pages

Pseudomonas Phage Banzai: Genomic and Functional Analysis of Novel Pbunavirus with Lytic Activity Against Pseudomonas aeruginosa

  • Andrei V. Chaplin,
  • Nina N. Sykilinda,
  • George A. Skvortsov,
  • Konstantin S. Troshin,
  • Anna A. Vasilyeva,
  • Sofia A. Shuraleva,
  • Artem A. Malkov,
  • Vladislav S. Simonov,
  • Boris A. Efimov and
  • Peter V. Evseev
  • + 3 authors

6 August 2025

Antibiotic-resistant Pseudomonas aeruginosa presents a critical global health challenge, particularly in hospital-acquired infections. Bacteriophages offer a promising therapeutic avenue due to their ability to target and lyse resistant strains. This...

  • Article
  • Open Access
57 Citations
9,144 Views
21 Pages

Branched Lateral Tail Fiber Organization in T5-Like Bacteriophages DT57C and DT571/2 is Revealed by Genetic and Functional Analysis

  • Alla K. Golomidova,
  • Eugene E. Kulikov,
  • Nikolai S. Prokhorov,
  • Ricardo С. Guerrero-Ferreira,
  • Yuriy A. Knirel,
  • Elena S. Kostryukova,
  • Karina K. Tarasyan and
  • Andrey V. Letarov

21 January 2016

The T5-like siphoviruses DT57C and DT571/2, isolated from horse feces, are very closely related to each other, and most of their structural proteins are also nearly identical to T5 phage. Their LTFs (L-shaped tail fibers), however, are composed of tw...

  • Conference Report
  • Open Access
8 Citations
8,015 Views
22 Pages

1st German Phage Symposium—Conference Report

  • Irene Huber,
  • Katerina Potapova,
  • Andreas Kuhn,
  • Herbert Schmidt,
  • Jörg Hinrichs,
  • Christine Rohde and
  • Wolfgang Beyer

29 March 2018

In Germany, phage research and application can be traced back to the beginning of the 20th century. However, with the triumphal march of antibiotics around the world, the significance of bacteriophages faded in most countries, and respective research...

  • Review
  • Open Access
49 Citations
6,725 Views
19 Pages

Deconstructing the Phage–Bacterial Biofilm Interaction as a Basis to Establish New Antibiofilm Strategies

  • Annegrete Visnapuu,
  • Marie Van der Gucht,
  • Jeroen Wagemans and
  • Rob Lavigne

16 May 2022

The bacterial biofilm constitutes a complex environment that endows the bacterial community within with an ability to cope with biotic and abiotic stresses. Considering the interaction with bacterial viruses, these biofilms contain intrinsic defense...

  • Review
  • Open Access
44 Citations
7,637 Views
24 Pages

26 October 2023

In recent decades, phage therapy has been overshadowed by the widespread use of antibiotics in Western countries. However, it has been revitalized as a powerful approach due to the increasing prevalence of antimicrobial-resistant bacteria. Although b...

  • Communication
  • Open Access
3 Citations
3,014 Views
10 Pages

Biophysical Properties of Bifunctional Phage-Biosensor

  • Vilhelmiina Juusti,
  • Janne Kulpakko,
  • Elizabeth Cudjoe,
  • Ville N. Pimenoff and
  • Pekka Hänninen

20 January 2023

Biosensor research is a swiftly growing field for developing rapid and precise analytical devices for biomedical, pharmaceutical, and industrial use and beyond. Herein, we propose a phage-based biosensor method to develop a sensitive and specific sys...

  • Article
  • Open Access
23 Citations
4,591 Views
33 Pages

Pseudomonas Phage MD8: Genetic Mosaicism and Challenges of Taxonomic Classification of Lambdoid Bacteriophages

  • Peter Evseev,
  • Anna Lukianova,
  • Nina Sykilinda,
  • Anna Gorshkova,
  • Alexander Bondar,
  • Mikhail Shneider,
  • Marsel Kabilov,
  • Valentin Drucker and
  • Konstantin Miroshnikov

26 September 2021

Pseudomonas phage MD8 is a temperate phage isolated from the freshwater lake Baikal. The organisation of the MD8 genome resembles the genomes of lambdoid bacteriophages. However, MD8 gene and protein sequences have little in common with classified re...

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