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32 Results Found

  • Article
  • Open Access
36 Citations
7,016 Views
25 Pages

Exploring the Papillomaviral Proteome to Identify Potential Candidates for a Chimeric Vaccine against Cervix Papilloma Using Immunomics and Computational Structural Vaccinology

  • Satyavani Kaliamurthi,
  • Gurudeeban Selvaraj,
  • Sathishkumar Chinnasamy,
  • Qiankun Wang,
  • Asma Sindhoo Nangraj,
  • William CS Cho,
  • Keren Gu and
  • Dong-Qing Wei

15 January 2019

The human papillomavirus (HPV) 58 is considered to be the second most predominant genotype in cervical cancer incidents in China. HPV type-restriction, non-targeted delivery, and the highcost of existing vaccines necessitate continuing research on th...

  • Article
  • Open Access
455 Views
32 Pages

22 December 2025

Background: Chromobacterium violaceum is an emerging multidrug-resistant (MDR) Gram-negative bacterium associated with severe septicemia, abscess formation, and high mortality, particularly in immunocompromised individuals. Increasing antimicrobial r...

  • Article
  • Open Access
16 Citations
2,975 Views
20 Pages

Computational Design of a Chimeric Vaccine against Plesiomonas shigelloides Using Pan-Genome and Reverse Vaccinology

  • Mahnoor Mushtaq,
  • Saifullah Khan,
  • Muhammad Hassan,
  • Alhanouf I. Al-Harbi,
  • Alaa R. Hameed,
  • Khadeeja Khan,
  • Saba Ismail,
  • Muhammad Irfan and
  • Sajjad Ahmad

8 November 2022

The swift emergence of antibiotic resistance (AR) in bacterial pathogens to make themselves adaptable to changing environments has become an alarming health issue. To prevent AR infection, many ways can be accomplished such as by decreasing the misus...

  • Article
  • Open Access
19 Citations
5,178 Views
25 Pages

Engineering Modified mRNA-Based Vaccine against Dengue Virus Using Computational and Reverse Vaccinology Approaches

  • Mamuna Mukhtar,
  • Amtul Wadood Wajeeha,
  • Najam us Sahar Sadaf Zaidi and
  • Naseeha Bibi

11 November 2022

Dengue virus belonging to the family Flaviviridae and its four serotypes are responsible for dengue infections, which extend over 60 countries in tropical and subtropical areas of the world including Pakistan. During the ongoing dengue outbreak in Pa...

  • Article
  • Open Access
2 Citations
2,640 Views
15 Pages

Conserved Domains in Variable Surface Lipoproteins A-G of Mycoplasma hyorhinis May Serve as Probable Multi-Epitope Candidate Vaccine: Computational Reverse Vaccinology Approach

  • Muhammad Zubair,
  • Jia Wang,
  • Yanfei Yu,
  • Muhammad Asif Rasheed,
  • Muhammad Faisal,
  • Ali Sobhy Dawood,
  • Muhammad Ashraf,
  • Guoqing Shao,
  • Zhixin Feng and
  • Qiyan Xiong

5 September 2023

Mycoplasma hyorhinis (M. hyorhinis) is responsible for infections in the swine population. Such infections are usually cured by using antimicrobials and lead to develop resistance. Until now, there has been no effective vaccine to eradicate the disea...

  • Review
  • Open Access
12 Citations
6,295 Views
18 Pages

Targeting Viral Surface Proteins through Structure-Based Design

  • Yogesh B Narkhede,
  • Karen J Gonzalez and
  • Eva-Maria Strauch

8 July 2021

The emergence of novel viral infections of zoonotic origin and mutations of existing human pathogenic viruses represent a serious concern for public health. It warrants the establishment of better interventions and protective therapies to combat the...

  • Article
  • Open Access
7 Citations
3,297 Views
14 Pages

Design of a Multi-Epitope Vaccine against Tuberculosis from Mycobacterium tuberculosis PE_PGRS49 and PE_PGRS56 Proteins by Reverse Vaccinology

  • Maritriny Ruaro-Moreno,
  • Gloria Paulina Monterrubio-López,
  • Abraham Reyes-Gastellou,
  • Juan Arturo Castelán-Vega,
  • Alicia Jiménez-Alberto,
  • Gerardo Aparicio-Ozores,
  • Karen Delgadillo-Gutiérrez,
  • Jorge Alberto González-Y-Merchand and
  • Rosa María Ribas-Aparicio

Tuberculosis is a disease caused by Mycobacterium tuberculosis, representing the second leading cause of death by an infectious agent worldwide. The available vaccine against this disease has insufficient coverage and variable efficacy, accounting fo...

  • Review
  • Open Access
19 Citations
5,541 Views
18 Pages

Advances of Reverse Vaccinology for mRNA Vaccine Design against SARS-CoV-2: A Review of Methods and Tools

  • Maria Karolaynne da Silva,
  • Daniel Melo de Oliveira Campos,
  • Shopnil Akash,
  • Shahina Akter,
  • Leow Chiuan Yee,
  • Umberto Laino Fulco and
  • Jonas Ivan Nobre Oliveira

21 October 2023

mRNA vaccines are a new class of vaccine that can induce potent and specific immune responses against various pathogens. However, the design of mRNA vaccines requires the identification and optimization of suitable antigens, which can be challenging...

  • Review
  • Open Access
7 Citations
673 Views
16 Pages

Systems Vaccinology Applied to DNA Vaccines: Perspective and Challenges

  • Melissa Lever,
  • Eduardo L. Silveira and
  • Helder I. Nakaya

DNA vaccination represents a new milestone in our technological efforts to avoid infectious diseases. Although this method of vaccination has had success in providing protection in animals, these vaccines suffer from low immunogenicity in humans. Que...

  • Review
  • Open Access
7 Citations
4,862 Views
12 Pages

9 July 2023

Reverse vaccinology is a powerful tool that was recently used to develop vaccines starting from a pathogen genome. Some bacterial infections have the necessity to be prevented then treated. For example, individuals with chronic pulmonary diseases, su...

  • Review
  • Open Access
2,248 Views
38 Pages

The methods utilized in the drug discovery pipeline routinely combine machine learning and deep learning algorithms to enhance the outputs. The generation of a drug target, through virtual screening and computational analysis of databases used for ta...

  • Review
  • Open Access
1,170 Views
21 Pages

Computational Approaches for Discovering Virulence Factors in Coccidioides

  • Arianna D. Daniel,
  • Vikram Senthil and
  • Katrina K. Hoyer

21 October 2025

Emerging respiratory dimorphic fungi, including Coccidioides, pose a growing public health threat due to their ability to cause severe disease and the limited therapeutic options. A growing gap exists between rapidly expanding computational data and...

  • Data Descriptor
  • Open Access
1 Citations
3,852 Views
12 Pages

17 February 2023

Reverse vaccinology (RV) is a computer-aided approach for vaccine development that identifies a subset of pathogen proteins as protective antigens (PAgs) or potential vaccine candidates. Machine learning (ML)-based RV is promising, but requires a dat...

  • Review
  • Open Access
4 Citations
10,140 Views
23 Pages

Production Technologies, Regulatory Parameters, and Quality Control of Vaccine Vectors for Veterinary Use

  • Raquel de M. Barbosa,
  • Amélia M. Silva,
  • Classius F. da Silva,
  • Juliana C. Cardoso,
  • Patricia Severino,
  • Lyghia M. A. Meirelles,
  • Arnobio A. da Silva-Junior,
  • César Viseras,
  • Joel Fonseca and
  • Eliana B. Souto

This paper presents a comprehensive review of the main types of vaccines approaching production technology, regulatory parameters, and the quality control of vaccines. Bioinformatic tools and computational strategies have been used in the research an...

  • Article
  • Open Access
9 Citations
3,615 Views
12 Pages

28 September 2021

Tuberculosis (TB) is the leading cause of death of any single infectious agent, having led to 1.4 million deaths in 2019 alone. Moreover, an estimated one-quarter of the global population is latently infected with Mycobacterium tuberculosis (MTB), pr...

  • Feature Paper
  • Article
  • Open Access
16 Citations
8,688 Views
14 Pages

BPSL1626: Reverse and Structural Vaccinology Reveal a Novel Candidate for Vaccine Design against Burkholderia pseudomallei

  • Riccardo Capelli,
  • Claudio Peri,
  • Riccardo Villa,
  • Arnone Nithichanon,
  • Oscar Conchillo-Solé,
  • Daniel Yero,
  • Paola Gagni,
  • Marcella Chiari,
  • Ganjana Lertmemongkolchai and
  • Louise J. Gourlay
  • + 4 authors

Due to significant advances in computational biology, protein prediction, together with antigen and epitope design, have rapidly moved from conventional methods, based on experimental approaches, to in silico-based bioinformatics methods. In this con...

  • Article
  • Open Access
24 Citations
7,545 Views
18 Pages

Immunoinformatics Features Linked to Leishmania Vaccine Development: Data Integration of Experimental and In Silico Studies

  • Rory C. F. Brito,
  • Frederico G. Guimarães,
  • João P. L. Velloso,
  • Rodrigo Corrêa-Oliveira,
  • Jeronimo C. Ruiz,
  • Alexandre B. Reis and
  • Daniela M. Resende

10 February 2017

Leishmaniasis is a wide-spectrum disease caused by parasites from Leishmania genus. There is no human vaccine available and it is considered by many studies as apotential effective tool for disease control. To discover novel antigens, computational p...

  • Article
  • Open Access
585 Views
26 Pages

Optimized Multi-Epitope Norovirus Vaccines Induce Robust Humoral and Cellular Responses in Mice

  • Ziyan Xing,
  • Luyao Ji,
  • Peifang Cao,
  • Ercui Feng,
  • Qing Xu,
  • Xun Chen,
  • Wenlong Dai and
  • Nan Jiang

31 December 2025

Background: Norovirus GII.4 is a major global health threat, yet no licensed vaccines exist due to the virus’s rapid evolution and high mutation rates. Objective: To rationally design and experimentally validate multi-epitope vaccine candidates...

  • Article
  • Open Access
915 Views
31 Pages

Annotation of the Extracellular Enveloped Form of Monkeypox Virus for the Design, Screening, Validation, and Simulation of a Chimeric Vaccine Construct

  • Mohammad Asrar Izhari,
  • Essa Ajmi Alodeani,
  • Siraj B. Alharthi,
  • Ahmad H. A. Almontasheri,
  • Foton E. Alotaibi,
  • Rakan E. Alotaibi,
  • Wael A. Alghamdi,
  • Osama Abdulaziz,
  • Fahad Alghamdi and
  • Ahmed R. A. Gosady
  • + 2 authors

8 July 2025

Recent outbreaks caused by hMPXV, especially hMPXV lineages/sub-lineages, represent public health threats necessitating stringent prophylactic measures to ameliorate their colossal impact. The current study annotated the EEV form of hMPXV’s tar...

  • Article
  • Open Access
109 Citations
10,867 Views
17 Pages

Immunoinformatics-Aided Design and Evaluation of a Potential Multi-Epitope Vaccine against Klebsiella Pneumoniae

  • Hamza Arshad Dar,
  • Tahreem Zaheer,
  • Muhammad Shehroz,
  • Nimat Ullah,
  • Kanwal Naz,
  • Syed Aun Muhammad,
  • Tianyu Zhang and
  • Amjad Ali

12 August 2019

Klebsiella pneumoniae is an opportunistic gram-negative bacterium that causes nosocomial infection in healthcare settings. Despite the high morbidity and mortality rate associated with these bacterial infections, no effective vaccine is available to...

  • Feature Paper
  • Article
  • Open Access
24 Citations
4,769 Views
23 Pages

27 September 2021

Klebsiella is a genus of nosocomial bacterial pathogens and is placed in the most critical list of World Health Organization (WHO) for development of novel therapeutics. The pathogens of the genus are associated with high mortality and morbidity. Owi...

  • Article
  • Open Access
19 Citations
4,474 Views
18 Pages

Synthetic Peptides Elicit Strong Cellular Immunity in Visceral Leishmaniasis Natural Reservoir and Contribute to Long-Lasting Polyfunctional T-Cells in BALB/c Mice

  • Rory Cristiane Fortes De Brito,
  • Jamille Mirelle de Oliveira Cardoso,
  • Levi Eduardo Soares Reis,
  • Fernando Augusto Siqueira Mathias,
  • Rodrigo Dian de Oliveira Aguiar-Soares,
  • Andréa Teixeira-Carvalho,
  • Bruno Mendes Roatt,
  • Rodrigo Corrêa-Oliveira,
  • Jeronimo Conceição Ruiz and
  • Alexandre Barbosa Reis
  • + 1 author

28 October 2019

Reverse vaccinology or immunoinformatics is a computational methodology which integrates data from in silico epitope prediction, associated to other important information as, for example, the predicted subcellular location of the proteins used in the...

  • Article
  • Open Access
8 Citations
4,957 Views
16 Pages

Distinct Antigen Delivery Systems Induce Dendritic Cells’ Divergent Transcriptional Response: New Insights from a Comparative and Reproducible Computational Analysis

  • Valerio Costa,
  • Dario Righelli,
  • Francesco Russo,
  • Piergiuseppe De Berardinis,
  • Claudia Angelini and
  • Luciana D’Apice

25 February 2017

Vaccination is the most successful and cost-effective method to prevent infectious diseases. However, many vaccine antigens have poor in vivo immunogenic potential and need adjuvants to enhance immune response. The application of systems biology to i...

  • Article
  • Open Access
35 Citations
4,741 Views
19 Pages

Designing of a Recombinant Multi-Epitopes Based Vaccine against Enterococcus mundtii Using Bioinformatics and Immunoinformatics Approaches

  • Metab Alharbi,
  • Abdulrahman Alshammari,
  • Abdullah F. Alasmari,
  • Salman Mansour Alharbi,
  • Muhammad Tahir ul Qamar,
  • Asad Ullah,
  • Sajjad Ahmad,
  • Muhammad Irfan and
  • Atif Ali Khan Khalil

Enterococcus species are an emerging group of bacterial pathogens that have a significant role in hospital-associated infections and are associated with higher mortality and morbidity rates. Among these pathogens, Enterococcus mundtii is one of the c...

  • Article
  • Open Access
195 Views
17 Pages

28 January 2026

Salmonellosis remains a persistent threat to global food safety and poultry productivity, compounded by rising antimicrobial resistance. Here, we report the in silico design and immunoinformatic validation of a broad-spectrum, edible multi-epitope va...

  • Article
  • Open Access
6 Citations
2,848 Views
20 Pages

Vandammella animalimorsus is a Gram-negative and non-motile bacterium typically transmitted to humans through direct contact with the saliva of infected animals, primarily through biting, scratches, or licks on fractured skin. The absence of a confir...

  • Article
  • Open Access
36 Views
28 Pages

Background/Objectives: Brucella is a major global One Health threat, causing an estimated 2.1 million human infections and substantial livestock losses annually, with no vaccine currently available for humans, underscoring the urgent need for a safe...

  • Review
  • Open Access
3 Citations
3,006 Views
17 Pages

13 April 2025

Mycobacterium tuberculosis (Mtb) vaccines are designed to prevent infection, prevent reactivation of latent infection, and/or provide adjuvant therapy to standard TB treatment for active Mtb. Emerging vaccine technologies include reverse vaccinology,...

  • Article
  • Open Access
2 Citations
3,350 Views
23 Pages

12 June 2025

Porcine reproductive and respiratory syndrome virus (PRRSV) is a major viral threat to swine, causing significant economic loss in the global pig farming industry. This virus includes two major genotypes, PRRSV1 and PRRSV2, both characterized by high...

  • Article
  • Open Access
1 Citations
2,499 Views
21 Pages

Despite the seriousness of the disease carried by ticks, little is known about the Bourbon virus. Only three US states have recorded human cases of Bourbon virus (BRBV) infection; in all cases, a tick bite was connected with the onset of the illness....

  • Article
  • Open Access
3 Citations
2,827 Views
29 Pages

Design and Validation of a Multi-Epitope mRNA Vaccine Construct Against Human Monkeypox Virus (hMPXV) by Annotating Protein of Intracellular Mature Virus (IMV) Form of hMPXV

  • Mohammad Asrar Izhari,
  • Siraj B. Alharthi,
  • Raed A. Alharbi,
  • Ahmad H. A. Almontasheri,
  • Wael A. Alghamdi,
  • Abdulmajeed Abdulghani A. Sindi,
  • Ahmad Abdulmajed Salem,
  • Ali Mahzari,
  • Fahad Alghamdi and
  • Ahmed R. A. Gosady

Background: hMPXV poses a major public health risk due to its human-to-human transmissibility, severe complications, especially in immunocompromised individuals, and global spread, necessitating effective surveillance and stringent prophylactic measu...

  • Article
  • Open Access
42 Citations
4,277 Views
24 Pages

Proteome-Wide Screening of Potential Vaccine Targets against Brucella melitensis

  • Mahnoor Malik,
  • Saifullah Khan,
  • Asad Ullah,
  • Muhammad Hassan,
  • Mahboob ul Haq,
  • Sajjad Ahmad,
  • Alhanouf I. Al-Harbi,
  • Samira Sanami,
  • Syed Ainul Abideen and
  • Muhammad Khurram
  • + 1 author

25 January 2023

The ongoing antibiotic-resistance crisis is becoming a global problem affecting public health. Urgent efforts are required to design novel therapeutics against pathogenic bacterial species. Brucella melitensis is an etiological agent of brucellosis,...