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  • Article
  • Open Access
9 Citations
3,723 Views
12 Pages

Development and Characterization of Chromosome Segment Substitution Lines Derived from Oryza rufipogon in the Background of the Oryza sativa indica Restorer Line R974

  • Gumu Ding,
  • Biaolin Hu,
  • Yi Zhou,
  • Wanling Yang and ,
  • Minmin Zhao,
  • Jiankun Xie and
  • Fantao Zhang
  • + 2 authors+ 0 author

22 April 2022

Dongxiang wild rice (DXWR) (O. rufipogon Griff.), which has the northernmost worldwide distribution of a wild rice species, is a valuable genetic resource with respect to improving stress tolerance in cultivated rice (Oryza sativa L.). In the three-l...

(This article belongs to the Topic Plant Domestication and Crop Evolution)
  • Article
  • Open Access
4 Citations
2,076 Views
14 Pages

Genetic Analysis of the Awn Length Gene in the Rice Chromosome Segment Substitution Line CSSL29

  • Zhengjie Wang,
  • Jun Yang,
  • Tao Huang,
  • Zhihao Chen and ,
  • Mvuyeni Nyasulu,
  • Qi Zhong,
  • Haohua He and
  • Jianmin Bian
  • + 3 authors+ 0 author

8 February 2025

Awn length is a significant agronomic trait in rice. To analyze the genetic mechanism of awn length in the chromosome segment substitution line 29 (CSSL29) derived from 9311 (recipient) into Nipponbare (NIP, donor), an F2 segregated population was co...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
17 Citations
4,474 Views
17 Pages

17 February 2020

Timing of germination determines whether a new plant life cycle can be initiated; therefore, appropriate dormancy and rapid germination under diverse environmental conditions are the most important features for a seed. However, the genetic architectu...

(This article belongs to the Special Issue Molecular Research in Rice: Agronomically Important Traits)
  • Article
  • Open Access
1 Citations
1,446 Views
15 Pages

QTL/Segment Mapping and Candidate Gene Analysis for Oil Content Using a Wild Soybean Chromosome Segment Substitution Line Population

  • Cheng Liu,
  • Jinxing Ren,
  • Huiwen Wen,
  • Changgeng Zhen and ,
  • Wei Han,
  • Xianlian Chen,
  • Jianbo He,
  • Fangdong Liu,
  • Lei Sun and
  • Wubin Wang
  • + 8 authors+ 3 authors

6 January 2026

Annual wild soybean, the ancestor of cultivated soybean, underwent a significant increase in seed oil content during domestication. To elucidate the genetic basis of this change, a chromosome segment substitution line population (177 lines) construct...

(This article belongs to the Special Issue Advanced Cultivation Techniques and Breeding Strategies for Oilseed Crops)
  • Article
  • Open Access
2 Citations
1,723 Views
13 Pages

Characterization of a Major Quantitative Trait Locus for the Whiteness of Rice Grain Using Chromosome Segment Substitution Lines

  • Lulu Chen,
  • Yujia Leng,
  • Caiyun Zhang,
  • Xixu Li and ,
  • Zhihui Ye,
  • Yan Lu,
  • Lichun Huang,
  • Qing Liu,
  • Jiping Gao and
  • Qiaoquan Liu
  • + 6 authors+ 1 author

23 December 2024

The whiteness of rice grains (WRG) is a key indicator of appearance quality, directly impacting its commercial value. The trait is quantitative, influenced by multiple factors, and no specific genes have been cloned to date. In this study, we first e...

(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
  • Article
  • Open Access
20 Citations
5,613 Views
16 Pages

Identification of QTLs and a Candidate Gene for Reducing Pre-Harvest Sprouting in Aegilops tauschii–Triticum aestivum Chromosome Segment Substitution Lines

  • Jie He,
  • Dale Zhang,
  • Xian Chen,
  • Yuge Li and ,
  • Minjie Hu,
  • Shaoguang Sun,
  • Qing Su,
  • Yarui Su and
  • Suoping Li
  • + 4 authors+ 0 author

Wheat pre-harvest sprouting (PHS) causes serious losses in wheat yield. In this study, precise mapping was carried out in the chromosome segment substitution lines (CSSL) F2 population generated by a direct cross of Zhoumai 18 (PHS-sensitive) and Aeg...

(This article belongs to the Special Issue Molecular Genetics and Plant Breeding)
  • Article
  • Open Access
2,479 Views
12 Pages

Identification and Fine Mapping of Quantitative Trait Loci for Tiller Angle Using Chromosome Segment Substitution Lines in Rice (Oryza Sativa L.)

  • Yujia Leng,
  • Tao Tao,
  • Shuai Lu,
  • Ran Liu and ,
  • Qingqing Yang,
  • Mingqiu Zhang,
  • Lianmin Hong,
  • Qianqian Guo,
  • Xinzhe Ren and
  • Jiping Gao
  • + 8 authors+ 3 authors

The tiller angle, which is an important agronomic trait, determines plant architecture and greatly influences the grain yield of rice. In this study, a population of chromosome segment substitution lines derived from a cross between a japonica variet...

(This article belongs to the Section Crop Genetics, Genomics and Breeding)
  • Article
  • Open Access
4 Citations
3,558 Views
24 Pages

Detection of QTLs Regulating Six Agronomic Traits of Rice Based on Chromosome Segment Substitution Lines of Common Wild Rice (Oryza rufipogon Griff.) and Mapping of qPH1.1 and qLMC6.1

  • Neng Zhao,
  • Ruizhi Yuan,
  • Babar Usman,
  • Jiaming Qin and ,
  • Jinlian Yang,
  • Liyun Peng,
  • Enerand Mackon,
  • Fang Liu,
  • Baoxiang Qin and
  • Rongbai Li
  • + 5 authors+ 0 author

11 December 2022

Wild rice is a primary source of genes that can be utilized to generate rice cultivars with advantageous traits. Chromosome segment substitution lines (CSSLs) are consisting of a set of consecutive and overlapping donor chromosome segments in a recip...

(This article belongs to the Special Issue Molecular-Genetic Basis of Plant Breeding 2.0)
  • Article
  • Open Access
7 Citations
1,988 Views
14 Pages

QTL Mapping of Fiber- and Seed-Related Traits in Chromosome Segment Substitution Lines Derived from Gossypium hirsutum × Gossypium darwinii

  • Wenwen Wang,
  • Yan Li,
  • Mingmei Le,
  • Lixia Tian and ,
  • Xujing Sun,
  • Rui Liu,
  • Xin Guo,
  • Yan Wu,
  • Yibing Li and
  • Zhengsheng Zhang
  • + 7 authors+ 2 authors

5 September 2024

A narrow genetic basis limits further the improvement of modern Gossypium hirsutum cultivar. The abundant genetic diversity of wild species provides available resources to solve this dilemma. In the present study, a chromosome segment substitution li...

(This article belongs to the Special Issue Functional and Structural Genomics Studies for Plant Breeding)
  • Article
  • Open Access
26 Citations
5,529 Views
17 Pages

22 August 2020

Common wild rice contains valuable resources of novel alleles for rice improvement. It is well known that genetic populations provide the basis for a wide range of genetic and genomic studies. In particular, chromosome segment substitution lines (CSS...

(This article belongs to the Special Issue Recent Advances in Genetics and Breeding of Major Staple Food Crops)
  • Article
  • Open Access
1 Citations
782 Views
18 Pages

Genetic Dissection of Yield-Related Traits Using an Inter-Subspecific Chromosome Segment Substitution Line Population in Rice

  • Yongle Xu,
  • Yue Pan,
  • Yong Xiang,
  • Yue Sun and ,
  • Junying Xu,
  • Haiyang Liu,
  • Longwei Yang,
  • Zhilian Qi,
  • Xinxin Tang and
  • Jian Yu
  • + 8 authors+ 3 authors

7 March 2026

Rice yield is a complex quantitative trait. Although a lot of genes for yield have been cloned, their genetic basis remains unknown. In the present study, a set of chromosome segment substitution line population (CSSL) was developed, derived from the...

(This article belongs to the Special Issue Recent Advances in Genomics, Genetic Resources Evaluation and Breeding of Rice)
  • Article
  • Open Access
4 Citations
2,404 Views
24 Pages

19 August 2024

Fiber length (FL) and strength (FS) are the core indicators for evaluating cotton fiber quality. The corresponding stages of fiber elongation and secondary wall thickening are of great significance in determining FL and FS formation, respectively. QT...

(This article belongs to the Special Issue Molecular Insights into Cotton Fiber Gene Regulation)
  • Article
  • Open Access
4 Citations
2,285 Views
15 Pages

Genetic Effects Analysis of QTLs for Rice Grain Size Based on CSSL-Z403 and Its Dissected Single and Dual-Segment Substitution Lines

  • Guangyi Xu,
  • Keli Deng,
  • Jinjin Yu,
  • Qiaolong Li and ,
  • Lu Li,
  • Aoni Xiang,
  • Yinghua Ling,
  • Changwei Zhang and
  • Fangming Zhao
  • + 4 authors+ 0 author

Rice chromosomal segment substitution lines (CSSLs) are ideal materials for studying quantitative traits such as grain size. Here, a rice large-grain CSSL-Z403 was identified among progeny of the recipient Xihui18 and the donor Jinhui35 based on mole...

(This article belongs to the Special Issue Molecular Research for Cereal Grain Quality 2.0)
  • Article
  • Open Access
2 Citations
2,622 Views
19 Pages

Development of Single-Segment Substitution Lines and Fine-Mapping of qSPP4 for Spikelets Per Panicle and qGW9 for Grain Width Based on Rice Dual-Segment Substitution Line Z783

  • Keli Deng,
  • Han Zhang,
  • Jiayi Wu,
  • Zhuowen Zhao and ,
  • Dachuang Wang,
  • Guangyi Xu,
  • Jinjin Yu,
  • Yinghua Ling and
  • Fangming Zhao
  • + 4 authors+ 0 author

9 December 2023

Single segment substitution line (SSSL) libraries are an ideal platform for breeding by design. To develop SSSLs-Xihui18 covering the whole genome, a novel rice chromosome segment substitution line (CSSL), Z783, carrying two substitution segments (av...

(This article belongs to the Special Issue Rice Molecular Breeding and Genetics 2.0)
  • Article
  • Open Access
1 Citations
912 Views
12 Pages

Identification of Wild Segments Related to High Seed Protein Content Under Multiple Environments and Analysis of Its Candidate Genes in Soybean

  • Ning Li,
  • Mengdan Cai,
  • Wei Luo,
  • Wei Han and ,
  • Cheng Liu,
  • Jianbo He,
  • Fangdong Liu,
  • Lei Sun,
  • Guangnan Xing and
  • Wubin Wang
  • + 6 authors+ 1 author

17 December 2025

Annual wild soybean is characterized by a high protein content. To elucidate the genetic basis, this study utilized a chromosome segment substitution line population (177 lines) constructed with cultivated soybean NN1138-2 as the recipient and wild s...

(This article belongs to the Special Issue Functional Genomics and Molecular Breeding of Soybeans—2nd Edition)
  • Article
  • Open Access
4 Citations
2,360 Views
12 Pages

21 September 2023

Plant height is an important agronomic trait associated with plant architecture and grain yield in rice (Oryza sativa L.). In this study, we report the identification of quantitative trait loci (QTL) for plant height using a chromosomal segment subst...

(This article belongs to the Special Issue Advances in Genetic Diversity and Population Structure of Plant Species)
  • Article
  • Open Access
10 Citations
3,939 Views
13 Pages

Genetic Elucidation for Response of Flowering Time to Ambient Temperatures in Asian Rice Cultivars

  • Kiyosumi Hori,
  • Daisuke Saisho,
  • Kazufumi Nagata,
  • Yasunori Nonoue and ,
  • Yukiko Uehara-Yamaguchi,
  • Asaka Kanatani,
  • Koka Shu,
  • Takashi Hirayama,
  • Jun-ichi Yonemaru and
  • Keiichi Mochida
  • + 6 authors+ 1 author

20 January 2021

Climate resilience of crops is critical for global food security. Understanding the genetic basis of plant responses to ambient environmental changes is key to developing resilient crops. To detect genetic factors that set flowering time according to...

(This article belongs to the Special Issue Molecular Research in Rice: Agronomically Important Traits 2.0)
  • Article
  • Open Access
13 Citations
3,928 Views
21 Pages

Detection of QTLs for Plant Height Architecture Traits in Rice (Oryza sativa L.) by Association Mapping and the RSTEP-LRT Method

  • Hélder Manuel Sitoe,
  • Yuanqing Zhang,
  • Siqi Chen,
  • Yulong Li and ,
  • Mehtab Ali,
  • Ognigamal Sowadan,
  • Benjamin Karikari,
  • Erbao Liu,
  • Xiaojing Dang and
  • Delin Hong
  • + 6 authors+ 1 author

6 April 2022

Plant height (PH) and its component traits are critical determinants of lodging resistance and strongly influence yield in rice. The genetic architecture of PH and its component traits were mined in two mapping populations. In the natural population...

(This article belongs to the Topic Plant Breeding, Genetics and Genomics)
  • Article
  • Open Access
2,533 Views
15 Pages

QTL Mapping and Functional Identification of Candidate Genes Regulated by Sinorhizobium fredii HH103 and Associated with Nodulation Traits in Soybean

  • Hejia Ni,
  • Siyi Tian,
  • Guoqing Zhang,
  • Jingyi Huo and ,
  • Huilin Tian,
  • Yang Peng,
  • Kaixin Yu,
  • Qingshan Chen,
  • Jinhui Wang and
  • Chunyan Liu
  • + 6 authors+ 1 author

31 July 2023

Large amounts of nitrogen fertilizer are annually applied to improve soybean yield. However, the overuse of nitrogen fertilizers has resulted in significant environmental pollution. Biological nitrogen fixation is an ecological and environmentally fr...

(This article belongs to the Section Crop Breeding and Genetics)
  • Article
  • Open Access
21 Citations
3,398 Views
21 Pages

Identifying Wild Versus Cultivated Gene-Alleles Conferring Seed Coat Color and Days to Flowering in Soybean

  • Cheng Liu,
  • Xianlian Chen,
  • Wubin Wang,
  • Xinyang Hu and ,
  • Wei Han,
  • Qingyuan He,
  • Hongyan Yang,
  • Shihua Xiang and
  • Junyi Gai
  • + 4 authors+ 0 author

4 February 2021

Annual wild soybean (G. soja) is the ancestor of the cultivated soybean (G. max). To reveal the genetic changes from soja to max, an improved wild soybean chromosome segment substitution line (CSSL) population, SojaCSSLP5, composed of 177 CSSLs with...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Communication
  • Open Access
7 Citations
3,313 Views
9 Pages

QTL Mapping of Mesocotyl Elongation and Confirmation of a QTL in Dongxiang Common Wild Rice in China

  • Qian Huang,
  • Chunyan Ju,
  • Yibing Cheng,
  • Di Cui and ,
  • Bing Han,
  • Zhengwu Zhao,
  • Xiaoding Ma and
  • Longzhi Han
  • + 3 authors+ 0 author

29 July 2022

Direct-seeded rice (DSR) cultivation is an effective and important way to resolve agricultural labor scarcity, water scarcity and high production cost issues. Mesocotyl elongation (ME) is the main driver of the rapid emergence of rice seedlings from...

(This article belongs to the Special Issue Discovery and Utilization of Germplasm Resources in Rice)
  • Article
  • Open Access
27 Citations
4,176 Views
18 Pages

Chlorophyll Retention and High Photosynthetic Performance Contribute to Salinity Tolerance in Rice Carrying Drought Tolerance Quantitative Trait Loci (QTLs)

  • Noppawan Nounjan,
  • Wuttipong Mahakham,
  • Jonaliza L. Siangliw,
  • Theerayut Toojinda and
  • Piyada Theerakulpisut

10 December 2020

Jasmine rice (Oryza sativa L.), or Khao Dawk Mali 105 (KDML105), is sensitive to drought and salt stresses. In this study, two improved drought-tolerant chromosome segment substitution lines (CSSLs) of KDML105 (CSSL8-103 and CSSL8-106), which carry d...

(This article belongs to the Section Crop Production)
  • Article
  • Open Access
2,463 Views
12 Pages

QTL Mapping by Chromosome Segment Substitution Lines (CSSLs) Reveals Candidate Gene Controlling Leaf Sucrose Content in Soybean (Glycine max (L.) Merr.)

  • Yuheng Wu,
  • Chenyu He,
  • Changheng Sun,
  • Xiangran Wang and ,
  • Zhaoming Qi,
  • Qingshan Chen,
  • Mingzhe Zhao,
  • Xindong Yao and
  • Dayong Zhang
  • + 4 authors+ 0 author

13 June 2023

Understanding the genetic basis of leaf sucrose content can provide a novel way in improving soybean yields. To identify the related QTLs, 190 materials of chromosome fragment substitution lines (CSSLs) were used in this study. The CSSLs were develop...

(This article belongs to the Special Issue New Advances in Soybean Molecular Biology)
  • Article
  • Open Access
9 Citations
3,472 Views
12 Pages

GsRSS3L, a Candidate Gene Underlying Soybean Resistance to Seedcoat Mottling Derived from Wild Soybean (Glycine soja Sieb. and Zucc)

  • Shuang Song,
  • Jing Wang,
  • Xingqi Yang,
  • Xuan Zhang and ,
  • Xiuli Xin,
  • Chunyan Liu,
  • Jianan Zou,
  • Xiaofei Cheng,
  • Ning Zhang and
  • Dawei Xin
  • + 8 authors+ 3 authors

Soybeans are a major crop that produce the best vegetable oil and protein for use in food and beverage products worldwide. However, one of the most well-known viral infections affecting soybeans is the Soybean Mosaic Virus (SMV), a member of the Poty...

(This article belongs to the Special Issue Genetics and Novel Techniques for Soybean Yield Enhancement)
  • Article
  • Open Access
2 Citations
1,590 Views
17 Pages

The Genetic Loci Associated with Fiber Development in Upland Cotton (Gossypium hirsutum L.) Were Mapped by the BSA-Seq Technique

  • Yanlong Yang,
  • Fenglei Sun,
  • Xin Wei,
  • Zhengzheng Wang and ,
  • Jun Ma,
  • Dawei Zhang,
  • Chunping Li,
  • Chengxia Lai,
  • Guoyong Fu and
  • Youzhong Li
  • + 5 authors+ 0 author

7 September 2025

Cotton fiber quality improvement remains a fundamental challenge in breeding programs due to the complex genetic architecture underlying fiber development. The narrow genetic base of upland cotton (Gossypium hirsutum L.) and the quantitative nature o...

(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
  • Article
  • Open Access
7 Citations
3,140 Views
15 Pages

Mapping and Validation of qHD7b: Major Heading-Date QTL Functions Mainly under Long-Day Conditions

  • Amir Sohail,
  • Liaqat Shah,
  • Ling Liu,
  • Anowerul Islam and ,
  • Zhengfu Yang,
  • Qinqin Yang,
  • Galal Bakr Anis,
  • Peng Xu,
  • Riaz Muhammad Khan and
  • Weixun Wu
  • + 10 authors+ 5 authors

1 September 2022

Heading date (HD) is one of the agronomic traits that influence maturity, regional adaptability, and grain yield. The present study was a follow-up of a previous quantitative trait loci (QTL) mapping study conducted on three populations, which uncove...

(This article belongs to the Special Issue Molecular Breeding and Germplasm Improvement of Rice)
  • Article
  • Open Access
1 Citations
2,771 Views
15 Pages

QTL Mapping and Data Mining to Identify Genes Associated with Soybean Epicotyl Length Using Cultivated Soybean and Wild Soybean

  • Lin Chen,
  • Shengnan Ma,
  • Fuxin Li,
  • Lanxin Li and ,
  • Wenjun Yu,
  • Lin Yu,
  • Chunshuang Tang,
  • Chunyan Liu,
  • Dawei Xin and
  • Jinhui Wang
  • + 6 authors+ 1 author

Soybean (Glycine max) plants first emerged in China, and they have since been established as an economically important oil crop and a major source of daily protein for individuals throughout the world. Seed emergence height is the first factor that e...

(This article belongs to the Special Issue Genetics and Novel Techniques for Soybean Pivotal Characters)
  • Article
  • Open Access
14 Citations
5,220 Views
18 Pages

Exploring the Loci Responsible for Awn Development in Rice through Comparative Analysis of All AA Genome Species

  • Kanako Bessho-Uehara,
  • Yoshiyuki Yamagata,
  • Tomonori Takashi,
  • Takashi Makino and ,
  • Hideshi Yasui,
  • Atsushi Yoshimura and
  • Motoyuki Ashikari
  • + 2 authors+ 0 author

8 April 2021

Wild rice species have long awns at their seed tips, but this trait has been lost through rice domestication. Awn loss mitigates harvest and seed storage; further, awnlessness increases the grain number and, subsequently, improves grain yield in Asia...

(This article belongs to the Special Issue Pre-breeding towards the Effective Utilization of Plant Genetic Resources)
  • Article
  • Open Access
7 Citations
4,681 Views
13 Pages

29 September 2019

Life histories and breeding systems strongly affect the genetic diversity of seed plants, but the genetic architectures that promote outcrossing in Oryza longistaminata, a perennial wild species in Africa, are not understood. We conducted a genetic a...

(This article belongs to the Special Issue Genetics in Rice)
  • Article
  • Open Access
15 Citations
2,651 Views
12 Pages

30 November 2022

High temperature is a major stress in rice production. Although considerable progress has been made in investigating heat tolerance (HT) in rice, the genetic basis of HT at the heading stage remains largely unknown. In this study, a novel set of chro...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
2 Citations
2,623 Views
14 Pages

Mapping of QTLs for Brown Rice Traits Based on Chromosome Segment Substitution Line in Rice (Oryza sativa L.)

  • Yujia Leng,
  • Lianmin Hong,
  • Tao Tao,
  • Qianqian Guo and ,
  • Qingqing Yang,
  • Mingqiu Zhang,
  • Xinzhe Ren,
  • Sukui Jin,
  • Xiuling Cai and
  • Jiping Gao
  • + 5 authors+ 0 author

Brown rice traits are critical to both grain yield and quality. In the present study, the chromosome segment substitution lines (CSSLs) population derived from a cross between japonica Koshihikari and indica Nona Bokra was used to analyze the brown r...

(This article belongs to the Special Issue Genetics, Genomics and Breeding of Rice)
  • Article
  • Open Access
6 Citations
4,356 Views
17 Pages

Analysis of Soybean Somatic Embryogenesis Using Chromosome Segment Substitution Lines and Transcriptome Sequencing

  • Si-Nan Li,
  • Peng Cheng,
  • Yun-Qi Bai,
  • Yan Shi and ,
  • Jing-Yao Yu,
  • Rui-Chao Li,
  • Run-Nan Zhou,
  • Zhan-Guo Zhang,
  • Xiao-Xia Wu and
  • Qing-Shan Chen
  • + 5 authors+ 0 author

19 November 2019

Soybean is an important cash crop that is widely used as a source of vegetable protein and edible oil. The regeneration ability of soybean directly affects the application of biotechnology. In this study, we used the exogenous hormone 2,4-D to treat...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
12 Citations
5,017 Views
15 Pages

Photosynthetic Plasticity and Stomata Adjustment in Chromosome Segment Substitution Lines of Rice Cultivar KDML105 under Drought Stress

  • Narawitch Lertngim,
  • Mathurada Ruangsiri,
  • Suparad Klinsawang,
  • Pimpa Raksatikan and ,
  • Burin Thunnom,
  • Meechai Siangliw,
  • Theerayut Toojinda and
  • Jonaliza Lanceras Siangliw
  • + 3 authors+ 0 author

24 December 2022

The impact of increasing drought periods on crop yields as a result of global climate change is a major concern in modern agriculture. Thus, a greater understanding of crop physiological responses under drought stress can guide breeders to develop ne...

(This article belongs to the Special Issue Improvement and Genetic Analysis of Germplasm Resources in Major Crops)
  • Article
  • Open Access
2 Citations
2,636 Views
18 Pages

Integrated Transcriptomic and Proteomic Characterization of a Chromosome Segment Substitution Line Reveals the Regulatory Mechanism Controlling the Seed Weight in Soybean

  • Siming Wei,
  • Zhenhai Yu,
  • Fangfang Du,
  • Fubin Cao and ,
  • Mingliang Yang,
  • Chunyan Liu,
  • Zhaoming Qi,
  • Qingshan Chen,
  • Jianan Zou and
  • Jinhui Wang
  • + 5 authors+ 0 author

21 March 2024

Soybean is the major global source of edible oils and vegetable proteins. Seed size and weight are crucial traits determining the soybean yield. Understanding the molecular regulatory mechanism underlying the seed weight and size is helpful for impro...

(This article belongs to the Special Issue Germplasm Resources and Molecular Breeding of Soybean)
  • Article
  • Open Access
1,078 Views
19 Pages

Identification of the Regulatory Network Governing Cold Tolerance During Soybean Germination Through the Transcriptomic Characterization of a Chromosome Segment Substitution Line

  • Chang Dong,
  • Qiuyu Wang,
  • Chun Tang,
  • Luanxiao Cui and ,
  • Chenyijun Guo,
  • Xue Han,
  • Candong Li,
  • Wenjing Pan,
  • Quanzhong Dong and
  • Zhaoming Qi
  • + 8 authors+ 3 authors

23 December 2025

Seed vitality is a key factor for successful germination of seeds and successful root establishment of crops. However, a cold environment can severely hinder the germination of soybean seeds, resulting in a significant decrease in yield. In this stud...

(This article belongs to the Section Plant-Crop Biology and Biochemistry)
  • Article
  • Open Access
6 Citations
4,312 Views
16 Pages

Identification of Candidate Genes for Salt Tolerance at Seedling Stage in Rice Using QTL-Seq and Chromosome Segment Substitution Line-Derived Population

  • Jiraporn Leawtrakun,
  • Wanchana Aesomnuk,
  • Srisawat Khanthong,
  • Reajina Dumhai and ,
  • Decha Songtoasesakul,
  • Sunadda Phosuwan,
  • Jiratchaya Nuanpirom,
  • Varodom Charoensawan,
  • Jonaliza L. Siangliw and
  • Siwaret Arikit
  • + 9 authors+ 4 authors

28 April 2024

Rice is a staple food for more than half of the world’s population. However, the pervasive problem of salinity is severely undermining rice production, especially in coastal and low-lying areas where soil salinization is widespread. This stress...

(This article belongs to the Collection Abiotic Stress Tolerance in Plants: Towards a Sustainable Agriculture)
  • Article
  • Open Access
7 Citations
2,963 Views
19 Pages

Multi-Omics Analysis of a Chromosome Segment Substitution Line Reveals a New Regulation Network for Soybean Seed Storage Profile

  • Cholnam Jong,
  • Zhenhai Yu,
  • Yu Zhang,
  • Kyongho Choe and ,
  • Songrok Uh,
  • Kibong Kim,
  • Chol Jong,
  • Jinmyong Cha,
  • Myongguk Kim and
  • Zhaoming Qi
  • + 12 authors+ 7 authors

Soybean, a major source of oil and protein, has seen an annual increase in consumption when used in soybean-derived products and the broadening of its cultivation range. The demand for soybean necessitates a better understanding of the regulatory net...

(This article belongs to the Special Issue Genetics and Novel Techniques for Soybean Pivotal Characters)
  • Article
  • Open Access
1 Citations
1,338 Views
24 Pages

8 April 2026

Background/Objectives: The significant negative correlation between protein and oil content in soybean seeds is a long-standing bottleneck for conventional breeding. Its root cause lies in insufficient understanding of related molecular regulatory pr...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
2 Citations
3,955 Views
13 Pages

Evaluation of Grain-Filling-Related Traits Using Taichung 65 x DV85 Chromosome Segment Substitution Lines (TD-CSSLs) of Rice

  • Abebaw Dessie Mabreja,
  • Vincent Pamugas Reyes,
  • Than Kutay Soe,
  • Kodai Shimakawa and ,
  • Daigo Makihara,
  • Shunsaku Nishiuchi and
  • Kazuyuki Doi
  • + 2 authors+ 0 author

18 January 2024

Grain yield of rice consists of sink capacity and grain filling. There are some genes known to contribute to sink capacity, but few genes associated with grain filling are known. We conducted a genetic analysis on yield-related traits by using a chro...

(This article belongs to the Special Issue Crop Breeding: Molecular Genetics and Genomics)
  • Article
  • Open Access
6 Citations
4,107 Views
17 Pages

Comparison between the Transcriptomes of ‘KDML105’ Rice and a Salt-Tolerant Chromosome Segment Substitution Line

  • Nopphawitchayaphong Khrueasan,
  • Panita Chutimanukul,
  • Kitiporn Plaimas,
  • Teerapong Buaboocha and ,
  • Meechai Siangliw,
  • Theerayut Toojinda,
  • Luca Comai and
  • Supachitra Chadchawan
  • + 3 authors+ 0 author

24 September 2019

‘KDML105’ rice, known as jasmine rice, is grown in northeast Thailand. The soil there has high salinity, which leads to low productivity. Chromosome substitution lines (CSSLs) with the ‘KDML105’ rice genetic background were ev...

(This article belongs to the Special Issue Abiotic Stress in Plants: Current Challenges and Perspectives)
  • Feature Paper
  • Article
  • Open Access
8 Citations
3,956 Views
17 Pages

Effects of Interspecific Chromosome Substitution in Upland Cotton on Cottonseed Micronutrients

  • Nacer Bellaloui,
  • Sukumar Saha,
  • Jennifer L. Tonos,
  • Jodi A. Scheffler and ,
  • Johnie N. Jenkins,
  • Jack C. McCarty and
  • David M. Stelly
  • + 2 authors+ 0 author

23 August 2020

Micronutrients are essential for plant growth and development, and important for human health nutrition and livestock feed. Therefore, the discovery of novel germplasm with significant variability or higher micronutrients content in crop seeds is cri...

(This article belongs to the Special Issue Physiological, Genetic, Molecular, and Environmental Factors Influencing Seed Nutrition)
  • Article
  • Open Access
3,353 Views
17 Pages

Genetic Effects of Indica Lineage Introgression on Amylopectin Chain Length Distribution in Japonica Milled Rice

  • Juan Cui,
  • Xue Zhao,
  • Yuejiao Yu,
  • Wenxing Zhang and ,
  • Ximan Kong,
  • Jian Sun and
  • Wenfu Chen
  • + 2 authors+ 0 author

The fine structure of amylopectin affects rice quality; in particular, the amylopectin chain length distribution (ACLD) in milled rice differs between subspecies of Oryza sativa L. However, the correlation between ACLD and quality trait factors, and...

(This article belongs to the Special Issue Advances in Genetics and Molecular Breeding of Crops)
  • Article
  • Open Access
1,816 Views
17 Pages

A Bread Wheat Line with the Substituted Wild Emmer Chromosome 4A Results in Fragment Deletions of Chromosome 4B and Weak Plants

  • Yu Qiu,
  • Fei Lu,
  • Bohao Yang,
  • Xin Hu and ,
  • Yanhao Zhao,
  • Mingquan Ding,
  • Lei Yang and
  • Junkang Rong
  • + 3 authors+ 0 author

5 April 2025

In response to the growing genetic uniformity within wheat populations, developing efficient wheat–alien translocation strategies has become critically important. We observed that several offspring of the common wheat (Triticum aestivum L.)&nda...

(This article belongs to the Special Issue Bioinformatics and Functional Genomics in Modern Plant Science)
  • Article
  • Open Access
1,779 Views
22 Pages

Root Transcriptome Analysis Identifies Salt-Tolerance Genes in Sweet Corn Chromosome Segment Substitution Lines (CSSLs)

  • Zili Zhang,
  • Xuxuan Duan,
  • Pengfei Liu,
  • Qingchun Chen and ,
  • Wei Sun,
  • Xiaorong Wan,
  • Yixiong Zheng,
  • Jianting Lin,
  • Feng Jiang and
  • Faqiang Feng
  • + 5 authors+ 0 author

31 May 2025

Salt stress severely constrains global crop productivity. However, most sweet corn cultivars exhibit weak tolerance to salt stress. In this study, two sweet corn CSSLs, salt-tolerant line D55 and salt-sensitive line D96, were selected as materials. W...

(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
  • Article
  • Open Access
5 Citations
3,935 Views
15 Pages

Identification and Validation of QTLs for Yield and Yield Components under Long-Term Salt Stress Using IR64 CSSLs in the Genetic Background of Koshihikari and Their Backcross Progenies

  • Nguyen Sao Mai,
  • Dao Duy Hanh,
  • Mai Nakashima,
  • Kotaro Kumamoto and ,
  • Nguyen Thi Thu Thuy,
  • Tohru Kobata,
  • Kuniyuki Saitoh and
  • Yoshihiko Hirai
  • + 3 authors+ 0 author

Unraveling the complex genetic bases and mechanisms underlying salt tolerance is of great importance for developing salt-tolerant varieties. In this study, we evaluated 42 chromosome segment substitution lines (CSSLs) carrying chromosome segments fro...

(This article belongs to the Topic Physiological and Molecular Characterization of Crop Tolerance to Abiotic Stresses)
  • Article
  • Open Access
26 Citations
5,166 Views
22 Pages

High-Temperature and Drought-Resilience Traits among Interspecific Chromosome Substitution Lines for Genetic Improvement of Upland Cotton

  • Kambham Raja Reddy,
  • Raju Bheemanahalli,
  • Sukumar Saha,
  • Kulvir Singh and ,
  • Suresh B. Lokhande,
  • Bandara Gajanayake,
  • John J. Read,
  • Johnie N. Jenkins,
  • Dwaine A. Raska and
  • David M. Stelly
  • + 8 authors+ 3 authors

10 December 2020

Upland cotton (Gossypium hirsutum L.) growth and development during the pre-and post-flowering stages are susceptible to high temperature and drought. We report the field-based characterization of multiple morpho-physiological and reproductive stress...

(This article belongs to the Special Issue Physiological, Genetic, Molecular, and Environmental Factors Influencing Seed Nutrition)
  • Article
  • Open Access
34 Citations
5,787 Views
21 Pages

Fine-Mapping of a Wild Genomic Region Involved in Pod and Seed Size Reduction on Chromosome A07 in Peanut (Arachis hypogaea L.)

  • Mounirou Hachim Alyr,
  • Justine Pallu,
  • Aissatou Sambou,
  • Joel Romaric Nguepjop and ,
  • Maguette Seye,
  • Hodo-Abalo Tossim,
  • Yvette Rachelle Djiboune,
  • Djibril Sane,
  • Jean-François Rami and
  • Daniel Fonceka
  • + 5 authors+ 0 author

25 November 2020

Fruit and seed size are important yield component traits that have been selected during crop domestication. In previous studies, Advanced Backcross Quantitative Trait Loci (AB-QTL) and Chromosome Segment Substitution Line (CSSL) populations were deve...

(This article belongs to the Special Issue Food Legume Genomics)
  • Article
  • Open Access
8 Citations
3,564 Views
23 Pages

High-Throughput Canopy and Belowground Phenotyping of a Set of Peanut CSSLs Detects Lines with Increased Pod Weight and Foliar Disease Tolerance

  • Davis Gimode,
  • Ye Chu,
  • Corley C. Holbrook,
  • Daniel Fonceka and ,
  • Wesley Porter,
  • Iliyana Dobreva,
  • Brody Teare,
  • Henry Ruiz-Guzman,
  • Dirk Hays and
  • Peggy Ozias-Akins
  • + 5 authors+ 0 author

26 April 2023

We deployed field-based high-throughput phenotyping (HTP) techniques to acquire trait data for a subset of a peanut chromosome segment substitution line (CSSL) population. Sensors mounted on an unmanned aerial vehicle (UAV) were used to derive variou...

(This article belongs to the Special Issue Omics Approaches for Crop Improvement)
  • Article
  • Open Access
6 Citations
5,973 Views
10 Pages

Genetic Mapping of the Gamete Eliminator Locus, S2, Causing Hybrid Sterility and Transmission Ratio Distortion Found between Oryza sativa and Oryza glaberrima Cross Combination

  • Myint Zin Mar,
  • Yohei Koide,
  • Mei Ogata,
  • Daichi Kuniyoshi and ,
  • Yoshiki Tokuyama,
  • Kiwamu Hikichi,
  • Mitsuhiro Obara and
  • Yuji Kishima
  • + 3 authors+ 0 author

Hybrid sterility is a reproductive barrier that prevents gene flow between species. In Oryza species, some hybrid sterility loci, which are classified as gamete eliminators, cause pollen and seed sterility and sex-independent transmission ratio disto...

(This article belongs to the Special Issue Rice Breeding and Genetics)
  • Article
  • Open Access
976 Views
16 Pages

14 December 2025

Maize requires substantial nitrogen input, and nitrogen deficiency significantly impairs root development, reducing yield. Therefore, improving maize root system architecture under low-nitrogen (LN) conditions is critical for improving nitrogen use e...

(This article belongs to the Section Crop Breeding and Genetics)

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