Diversity

40 pages, 7229 KB

Open AccessArticle

Influence of Habitat on the Impact of Non-Native Fishes on Native Ichthyofauna in a Group of Lakes of the Lower Doce River, Espírito Santo, Southeastern Brazil

by Eduardo Hoffmam de Barros, Nuno Caiola, Renan Luxinger Betzel, Ronaldo Fernando Martins-Pinheiro and Luisa Maria Sarmento-Soares

Diversity 2025, 17(9), 650; https://doi.org/10.3390/d17090650 - 16 Sep 2025

Abstract

The Doce River basin is the largest river system in southeastern Brazil. Over the last century, the Doce River has been undergoing a serious process of degradation, culminating in a huge environmental disaster due to Fundão tailing dam bursting in Mariana (Minas Gerais) [...] Read more.

The Doce River basin is the largest river system in southeastern Brazil. Over the last century, the Doce River has been undergoing a serious process of degradation, culminating in a huge environmental disaster due to Fundão tailing dam bursting in Mariana (Minas Gerais) and causing severe damage to biodiversity and local human communities. Near its mouth, the Doce River harbors an extensive lake area, with over ninety lakes on coastal lowlands. These lakes are of fluvial origin and connected to each other and to the main Doce River by small tributary streams. In this area, one of the main sources of impact on the fish fauna is the presence of non-native fish species. We compared richness, taxonomic diversity, beta diversity, species composition and proportion of non-native species in lakes and streams, and related these variables to each other and to environmental variables. We used the indicator species index (IndVal) to identify species associated with each type of environment. We used multivariate analyses to test the influence of stream habitat on the fish fauna in streams and Generalized Linear Models (GLMs) to test the influence of distance to lakes on the proportion of non-native species in streams, and the influence of this proportion on total and native fish richness and diversity. The results showed that some non-native species originating from lentic environments have adapted to the lakes and are spread throughout the internal lake system. In streams, there are proportionally fewer non-native fish and their distribution is more fragmented, as some stretches do not provide the conditions for the establishment of some of these species, making them potential refuges for native ichthyofauna. As the streams move away from the lakes, the proportion of non-native species tends to decrease. In streams, the richness and diversity of native species are affected by the proportion of non-native species, but not in lakes. The native vegetation in the landscape showed no potential for reducing the invasion of non-native species. The depth and width of the streams are directly related to the proportion of non-native species within the streams and are structural characteristics that should be considered in strategies for the conservation of the fish fauna. Full article

(This article belongs to the Section Animal Diversity)

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15 pages, 1767 KB

Open AccessArticle

Ichthyoplankton Composition and Environmental Drivers in the Sanquianga Tapaje Estuarine System, Eastern Tropical Pacific

by Juan José Gallego-Zerrato, Andrés Cuellar and Alan Giraldo

Diversity 2025, 17(9), 649; https://doi.org/10.3390/d17090649 - 16 Sep 2025

Abstract

Estuaries are vital coastal ecosystems that support fish during key life stages such as spawning, feeding, and early development. This study investigates ichthyoplankton composition and abundance in the Sanquianga Tapaje estuarine system, located in the southern Eastern Tropical Pacific (ETP) of Colombia. Zooplankton [...] Read more.

Estuaries are vital coastal ecosystems that support fish during key life stages such as spawning, feeding, and early development. This study investigates ichthyoplankton composition and abundance in the Sanquianga Tapaje estuarine system, located in the southern Eastern Tropical Pacific (ETP) of Colombia. Zooplankton samples were collected using bongo nets at 11 stations across four river mouths (Tapaje, Amárales, Sanquianga, and Guascama), alongside measurements of oceanographic parameters at 1 and 10 m depths. A total of 357 fish larvae were identified, representing 23 species and 11 families, with Engraulidae, Gobiidae, and Carangidae dominating the assemblage. Water column conditions reflected typical tropical estuarine dynamics, influenced by tidal action and freshwater input. Spearman’s rank correlation revealed strong positive associations between larval abundance and surface salinity (r_s = 0.81, p = 0.003), as well as dissolved oxygen saturation and concentration (r_s > 0.68, p < 0.021). Diversity indices (Shannon, Pielou, Whittaker) indicated high species turnover in transitional zones, and larval hotspots were associated with outer estuarine zones. Salinity and dissolved oxygen emerged as key drivers of ichthyoplankton distribution. These findings underscore the ecological complexity and nursery function of tropical estuaries, offering baseline data to inform biodiversity conservation, ecosystem monitoring, and adaptive management in Colombia’s Pacific region and across the ETP. Full article

(This article belongs to the Special Issue Marine Zooplankton and Ichthyoplankton Ecology: Patterns, Processes, and Perspective)

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16 pages, 4566 KB

Open AccessArticle

Asymmetric Distribution of Fish Diversity in Inflows of the Black Irtysh River (Central Asia, Kazakhstan)

by Nadir Shamilevich Mamilov, Nazym Sapargaliyevna Sapargaliyeva, Erlan Kegenov, Gulnar Bolatovna Kegenova, Igor Nikolaevich Magda, Oleg Efimovich Lopatin, Gulnaz Barinova, Sayat Ermukhanbetovich Sharakhmetov, Aliya Gabdullina, Gleb Bolbotov, Valentin Rudoi and Vladimir Vorobyov

Diversity 2025, 17(9), 648; https://doi.org/10.3390/d17090648 - 15 Sep 2025

Abstract

The diversity and distribution of fish in the water bodies of the Black Irtysh basin was studied in connection with six abiotic environmental parameters (surface flow velocity, width and depth of rivers, connection with the main river, and bottom and maximum temperature). The [...] Read more.

The diversity and distribution of fish in the water bodies of the Black Irtysh basin was studied in connection with six abiotic environmental parameters (surface flow velocity, width and depth of rivers, connection with the main river, and bottom and maximum temperature). The current species diversity of fish consists of 29 native and 11 alien species. The diversity of right and left tributaries varies greatly as a result of differences in abiotic parameters. The presence of a hydrological connection of reservoirs by itself does not guarantee the distribution of species throughout the basin. Rare indigenous Siberian Taimen Hucho taimen and Markakol Lenok Brachymystax savinovi were regularly found in the right tributaries of the Irtysh River and Lake Markakol, respectively. New fish species to the Kazakh section of the Black Irtysh River have been discovered: Tibetan stone loach Triplophysa stolickai, Severtsov’s loach Triplophysa sewerzowi and alien fish species as asp Leuciscus aspius, Chinese false gudgeon Abbottina rivularis, sunbleak Leucaspius delinetaus, and Misgurnus sp. Full article

(This article belongs to the Section Freshwater Biodiversity)

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13 pages, 3645 KB

Open AccessArticle

Recruitment, Spat Settlement and Growth of the Cultured Mediterranean Mussel Mytilus galloprovincialis in the Maliakos Gulf (Central Aegean Sea)

by John A. Theodorou, Ioannis Tzovenis, Fotini Kakali, Cosmas Nathanailides, Ifigenia Kagalou, George Katselis and Dimitrios K. Moutopoulos

Diversity 2025, 17(9), 647; https://doi.org/10.3390/d17090647 - 13 Sep 2025

Abstract

The present study explored the seasonal dynamics of spat settlement and growth of the Mediterranean mussel (Mytilus galloprovincialis) in the semi-enclosed and eutrophic Maliakos Gulf (Central Aegean, Greece), a coastal system within the Natura 2000 network (GR 2440002, Natura 2000). Spat [...] Read more.

The present study explored the seasonal dynamics of spat settlement and growth of the Mediterranean mussel (Mytilus galloprovincialis) in the semi-enclosed and eutrophic Maliakos Gulf (Central Aegean, Greece), a coastal system within the Natura 2000 network (GR 2440002, Natura 2000). Spat collectors were deployed at three mussel farms representing different locations in the gulf (north, south, and inner west) and at multiple depths over a year. The results revealed a clear reproductive cycle, with spawning initiated in early January and spat settlement occurring from March to June. Settlement intensity was highest in shallower waters during the beginning of the season (March) and in the end (June), while depth had no significant effect mid-season. Mussel size and weight varied significantly with season and location, with the largest individuals observed during spring and early summer at the north and south sites. Environmental monitoring depicted strong nitrogen enrichment and phosphorus limitation, driven by inputs from the Spercheios River and surrounding agricultural activities. During winter, elevated chlorophyll-a concentrations likely supported early larval development, while nutrient imbalances threaten long-term ecosystem stability. These findings underscore the importance of area- and season-specific management of spat collectors and call for integrated monitoring and regulation of nutrient inputs to safeguard the ecological integrity of the gulf and ensure sustainable mussel farming. Full article

(This article belongs to the Section Marine Diversity)

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17 pages, 5761 KB

Open AccessArticle

Characterization and Prevalence of Different Isolates of Pseudomonas savastanoi and Pathogenicity Properties on Olive and Oleander Plants

by Serkan Bayman and Hamit Kavak

Diversity 2025, 17(9), 646; https://doi.org/10.3390/d17090646 - 12 Sep 2025

Abstract

This study investigated the distribution and epidemiology of Pseudomonas savastanoi pv. savastanoi (Pss), the causal agent of olive knot disease, in major olive-growing provinces of Southeastern Anatolia, Turkey, between 2019 and 2021. Field surveys in Adıyaman and Mardin revealed knot symptoms [...] Read more.

This study investigated the distribution and epidemiology of Pseudomonas savastanoi pv. savastanoi (Pss), the causal agent of olive knot disease, in major olive-growing provinces of Southeastern Anatolia, Turkey, between 2019 and 2021. Field surveys in Adıyaman and Mardin revealed knot symptoms on olive shoots, and Pss isolates were successfully obtained from symptomatic tissues. Biochemical assays on King’s B medium identified all strains as Gram-negative, oxidase-negative, pectolytic activity-negative, and arginine dihydrolase-negative while showing a positive hypersensitive reaction. Among the four isolates, two were levan-positive and non-fluorescent, whereas two were levan-negative and fluorescent. PCR with IAALF and IAALR primers amplified a 454 bp fragment in all isolates, confirming their identity as Pss. Pathogenicity assays on carrot slices and olive plants verified their pathogenic nature. Virulence tests demonstrated that infection severity was highest in pink oleander, followed by olive and white oleander. Disease incidence differed markedly between provinces, averaging 0.017% in Adıyaman and 33.28% in Mardin, with Derik district reaching 50.37% incidence and 100% prevalence. A novel infection-area-based method yielded results consistent with knot size assessments. These findings confirm the pathogenic potential and host range of Pss in Southeastern Anatolia and emphasize the importance of monitoring, epidemiological assessment, and management strategies. Full article

(This article belongs to the Special Issue Pseudomonas Biology and Biodiversity)

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22 pages, 2411 KB

Open AccessArticle

Morphometric, Phenological, and Nutritional Characterization of Five Wild Bean Species from Durango, Mexico

by Denisse Téllez-Mazzocco, Yolanda Herrera-Arrieta, Gabriel Alejandre-Iturbide, Miguel Mauricio Correa-Ramírez, Marlon Rojas-López and Kalina Bermúdez-Torres

Diversity 2025, 17(9), 645; https://doi.org/10.3390/d17090645 - 12 Sep 2025

Abstract

The taxonomic complexity of the genus Phaseolus requires a detailed characterization of traits that highlight species diversity. This study evaluated five wild bean species throughout their life cycle, analyzing 20 qualitative and 18 quantitative morphometric variables as well as phenological traits such as [...] Read more.

The taxonomic complexity of the genus Phaseolus requires a detailed characterization of traits that highlight species diversity. This study evaluated five wild bean species throughout their life cycle, analyzing 20 qualitative and 18 quantitative morphometric variables as well as phenological traits such as days, along with recording phenological data such as the number of days from germination to seed maturity. The nutritional composition was assessed using Fourier-transform infrared spectroscopy (FTIR) to identify the functional groups of organic compounds in the seed coat and embryo. Significant differences were observed among species, including distinct germination forms that may affect environmental adaptation and flower colors potentially linked to pollinator interactions. Morphological and phenological diversity was documented, along with variation in seed and embryo protein, polysaccharide, and lipid content. Three species were identified as being the most suitable with agronomic potential for crop improvement: P. vulgaris, P. leptostachyus, and P. acutifolius, while P. coccineus and P. leptostachyus stood out for their nutritional profiles and potential contributions to food security. The results underscore the importance of integrating morphological, phenological, and nutritional data to better understand Phaseolus diversity and inform conservation and breeding strategies. Full article

(This article belongs to the Section Plant Diversity)

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24 pages, 22832 KB

Open AccessArticle

Habitat and Conservation Assessment of Annual Killifishes of the Genus Xenurolebias (Rivulidae: Cynolebiinae) from Coastal Floodplains, Including the First Record South of the Rio Doce, Southeastern Brazil

by Bruno Pinheiro Gomes, Luisa Maria Sarmento-Soares, Ronaldo Fernando Martins-Pinheiro and Gustavo Rocha Leite

Diversity 2025, 17(9), 644; https://doi.org/10.3390/d17090644 - 12 Sep 2025

Abstract

The Atlantic Forest coastal tablelands is home to a wide diversity of small-sized freshwater fish sharing a biogeographically congruent distributional pattern. The annual killifish Xenurolebias are among these remarkable inhabitants in the riparian wetlands with four species in the area. Xenurolebias pataxo are [...] Read more.

The Atlantic Forest coastal tablelands is home to a wide diversity of small-sized freshwater fish sharing a biogeographically congruent distributional pattern. The annual killifish Xenurolebias are among these remarkable inhabitants in the riparian wetlands with four species in the area. Xenurolebias pataxo are located between the Jucuruçu and Mucuri rivers, geographically replaced by Xenurolebias myersi at the Riacho Doce and the Rio Itaúnas, and, further south, Xenurolebias cricarensis are in the floodplains of the Rio São Mateus and Xenurolebias izecksohni, living in temporary environments of the Rio Barra Seca, north of the Rio Doce. Due to their restricted habitat in the lowlands, these annual killifish could all be designated as a target species, providing benefits in the conservation of riparian wetlands. However, less is known about their habits and real distribution. Otherwise, the accelerated habitat loss is worrisome. Two of these species are threatened with extinction on Red Lists; one is Near-Threatened; and one is Data-Deficient. After ten years since the last species description, our investigations revealed a fifth species, the first recorded south of Rio Doce. The present contribution aims to characterize the occupied habitat by each species within the temporary environments and present an updated distributional data on these fish. Additionally, a new Xenurolebias is described, the first one recorded south of Rio Doce. Full article

(This article belongs to the Special Issue Evolution, Systematic and Conservation of Freshwater Fishes)

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11 pages, 3432 KB

Open AccessArticle

Plant Diversity Affects Rodents’ Selection of Different-Sized Seeds

by Jiming Cheng, Yingqun Feng, Ningli Wang, Chao Zhang, Jiahui Liu, Xinyue Chen, Xingfu Yan and Yonghong Luo

Diversity 2025, 17(9), 643; https://doi.org/10.3390/d17090643 - 12 Sep 2025

Abstract

Environmental changes may affect animal hoarding behavior through changes to plant diversity. Food hoarding behavior in small mammals can affect the seed dispersal process and thus the regeneration of the plant population. However, little is known about how small mammals select seeds of [...] Read more.

Environmental changes may affect animal hoarding behavior through changes to plant diversity. Food hoarding behavior in small mammals can affect the seed dispersal process and thus the regeneration of the plant population. However, little is known about how small mammals select seeds of different sizes under different forest types. Here, we tracked the fates of 3360 seeds in the field. We used a generalized linear mixed model to analyze the effects of small mammals on three fates (predation in situ, predation after dispersal, hoarding after dispersal) and two dispersal distances (predation distance after dispersal and hoarding distance after dispersal) of different seeds by size and forest type. The results showed that small mammals consume smaller seeds in situ and cache larger seeds after dispersal. The predation distance after dispersal and hoarding distance after dispersal of the large seeds were significantly higher than those of small seeds. Forest types with dense vegetation conditions exhibited lower hoarding rates after dispersal, while those with poor vegetation conditions had increased predation and hoarding distances after dispersal. Our results suggest that larger seeds are dispersed to further distances, potentially enhancing plant population regeneration. However, seeds are more often scatter-hoarded and dispersed over longer distances in forests with poor vegetation conditions, which may also benefit plant population regeneration. These results provide insights into how seed size and forest type influence seed predation and dispersal by small mammals. Full article

(This article belongs to the Section Plant Diversity)

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23 pages, 3357 KB

Open AccessArticle

Exploring Cladocera Assemblage and Responses to Land Use Patterns

by Sheila Mumbi A. Wamugi, István Gyulai, Jázmin Jakab, Umar Abba Kawu, Andor G. Soltész, Andrea Böjthe, Zsófi Sajtos, Géza Selmeczy and Janos Korponai

Diversity 2025, 17(9), 642; https://doi.org/10.3390/d17090642 - 12 Sep 2025

Abstract

Cladocera communities in surface sediments from 31 lakes in Hungary were analysed to assess the impacts of land use on the aquatic systems. We evaluated the alpha and beta diversity metrics, with land use classification types based on the Corine Land Cover. Physical [...] Read more.

Cladocera communities in surface sediments from 31 lakes in Hungary were analysed to assess the impacts of land use on the aquatic systems. We evaluated the alpha and beta diversity metrics, with land use classification types based on the Corine Land Cover. Physical and water chemistry parameters were analysed using standardised procedures. Using redundancy analysis (RDA), total phosphorus (TP) was identified as the key driver of Cladocera composition and distribution. End-member mixing analysis (EMMA) revealed distinctive ecological patterns in Cladocera assemblages across land use types. Our results demonstrate that agriculture and urbanisation contribute to the associated degradation of the lakes and changes in trophic states. Wetlands, forests, and open waters play a critical role as buffer zones in mitigating anthropogenic effects, with Cladocera community composition mirroring the nutrient conditions of the lakes. Full article

(This article belongs to the Special Issue Diversity and Ecology of Freshwater Plankton)

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12 pages, 1608 KB

Open AccessArticle

Digitization of the Marine Herbarium “TAR” to Increase Biodiversity Knowledge

by Loredana Papa, Ester Cecere, Antonella Petrocelli and Lucia Spada

Diversity 2025, 17(9), 641; https://doi.org/10.3390/d17090641 - 11 Sep 2025

Abstract

Over the past twenty years, significant efforts have been made to digitize natural collections. This process represents a crucial step in preserving and enhancing biodiversity data. In this context, the phycology team from the Institute for Water Research (CNR-IRSA) in Taranto (southern Italy), [...] Read more.

Over the past twenty years, significant efforts have been made to digitize natural collections. This process represents a crucial step in preserving and enhancing biodiversity data. In this context, the phycology team from the Institute for Water Research (CNR-IRSA) in Taranto (southern Italy), as a partner of the NRRP Project ITINERIS, and within the nascent European Research Infrastructure “Distributed System of Scientific Collections” (DiSSCo), answered to the challenge of digitizing and sharing the extensive biodiversity data preserved in the marine macrophyte collection Herbarium TAR. This herbarium includes over 500 species collected between 1982 and 2025. Digitization was carried out in accordance with international standards for imaging and in compliance with FAIR principles for metadata curation. A total of 353 digital specimens were produced, including 152 species of seaweeds (76 Rhodophyta, 47 Heterokontophyta, and 29 Chlorophyta) and 3 species of Spermatophyta. Notably, 15 non-indigenous species were documented. Part of the metadata, structured using the Darwin Core standard, has been published on GBIF. This initiative, carried out within the ITINERIS framework, highlights the value of both long-term biodiversity monitoring and digital data in supporting research on climate change, biological invasions, and the conservation of marine ecosystems. Full article

(This article belongs to the Section Marine Diversity)

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17 pages, 3762 KB

Open AccessArticle

Drouetiella elegans (Oculatellaceae, Cyanobacteriota): A New Species of the Recently Established Genus from the Russian Arctic

by Denis Davydov and Anna Vilnet

Diversity 2025, 17(9), 640; https://doi.org/10.3390/d17090640 - 11 Sep 2025

Abstract

The species diversity of the recently described genus Drouetiella (Oculatellaceae, Cyanobacteriota), including thin filamentous cyanobacteria, has been rapidly increasing due to the subsequent discovery of new-to-science species in the last several years. This study focuses on one more strain that was isolated from [...] Read more.

The species diversity of the recently described genus Drouetiella (Oculatellaceae, Cyanobacteriota), including thin filamentous cyanobacteria, has been rapidly increasing due to the subsequent discovery of new-to-science species in the last several years. This study focuses on one more strain that was isolated from a small lake on the Chukotka Peninsula in the Russian Arctic and tested by an integrative approach. In the result of molecular phylogenetic analysis of the 16S rRNA gene and the 16S–23S ITS rRNA region, this strain was found in a separate clade in the genus Drouetiella. The strain is characterized by unique secondary structures of conserved regions D1–D1′, Box–B, V2, and V3 helices of the 16–23S ITS rRNA. Morphologically, the tested strain was distinct from other Drouetiella species by long cells in mature trichomes, absence of false branching, and hormogonia. Drouetiella elegans occurred in the plankton of a small lake and shared ecological similarities with some aquatic strains of Drouetiella lurida. We provide a taxonomic description of a new species, Drouetiella elegans sp. nov. Full article

(This article belongs to the Section Microbial Diversity and Culture Collections)

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17 pages, 7235 KB

Open AccessArticle

A New Species of Gammanema (Nematoda: Chromadorida: Selachinematidae) from Jeju Island, South Korea

by Kyeongmoon Son and Raehyuk Jeong

Diversity 2025, 17(9), 639; https://doi.org/10.3390/d17090639 - 11 Sep 2025

Abstract

During a survey of the intertidal zone on the eastern coast of Jeju Island, Korea, a new species of free-living marine nematode belonging to the Selachinematidae (Chromadorida) family was discovered and described. Gammanema papillatum sp. nov. is morphologically most similar to G. lunatum [...] Read more.

During a survey of the intertidal zone on the eastern coast of Jeju Island, Korea, a new species of free-living marine nematode belonging to the Selachinematidae (Chromadorida) family was discovered and described. Gammanema papillatum sp. nov. is morphologically most similar to G. lunatum and G. agglutinans, both recorded from New Zealand, by sharing a loop-shaped amphid in males, unlike the multispiral amphid typical of most congeners, and the presence of cuticular spines. It differs from G. lunatum in body length (1122–1366 µm vs. 754–1196 µm), a-ratio (21–23 vs. 13–15), shape of the supplementary organs (papilla-shaped vs. cup-shaped), and distance from the posterior-most supplement to the cloacal opening (58–63 µm vs. 18–32 µm). In terms of precloacal supplementary organ morphology, the new species also resembles Gammanema conicauda, as both are the only congeners with papilla-shaped precloacal supplementary organs. However, G. papillatum sp. nov. differs from G. conicauda by the number of supplementary organs (7–8 vs. 22), amphidial shape (loop-shaped vs. unispiral), and the presence of cuticular spines (absent in G. conicauda). Near full-length SSU and D2–D3 region LSU rDNA sequences were obtained for the new species. Molecular analyses revealed the lowest divergence from G. lunatum (SSU: 1.7%; LSU: 19.8%), with greater divergence from other congeners (SSU: 4.0–4.6%; LSU: 30.5–37.1%). This represents the second record of Gammanema from Korean waters and provides new insights into trait combinations that may help define a subgroup within the genus. Full article

(This article belongs to the Special Issue Distribution, Biodiversity, and Ecology of Nematodes)

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20 pages, 9322 KB

Open AccessArticle

Thermal Ecology of Hermann’s Tortoise, Testudo hermanni and Glass Lizard Pseudopus apodus in a Seasonal Environment

by Ana Vujović, Vladimir Pešić and Roger Meek

Diversity 2025, 17(9), 638; https://doi.org/10.3390/d17090638 - 11 Sep 2025

Abstract

The importance of temperature for the biology and ecology of reptiles is well known. In temperate regions where temperatures fluctuate on a daily and seasonal basis, reptiles must respond appropriately to maintain body temperatures that enable activity. In this study, we describe temporal [...] Read more.

The importance of temperature for the biology and ecology of reptiles is well known. In temperate regions where temperatures fluctuate on a daily and seasonal basis, reptiles must respond appropriately to maintain body temperatures that enable activity. In this study, we describe temporal changes in the thermal environment from January to December in Montenegro and the impact on two species of reptile, Hermann’s tortoise, Testudo hermanni, and the large, legless lizard Pseudopus apodus. These reptiles differ in morphology and diet and have a long phylogenetic separation but experience the same thermal environment. To give insight into any impact of these factors on their thermal ecology we calculated monthly thermoregulatory efficiency indexes derived from field body temperatures, set point temperatures—defined as the preferred body temperatures, and temperatures of null models. The results indicated that both species exhibited high thermoregulatory efficiency, with T. hermanni showing the highest levels across the active year and also maintaining higher body temperatures than P. apodus potentially reflecting the dietary and lifestyle differences. During the hottest months, body temperatures of T. hermanni frequently exceeded the set point range but were not exceeded by P. apodus at any time. Microhabitat patches of closely situated sunlight and shaded areas were the most frequently selected patches in both species, with T. hermanni spending greater amounts of time in shaded patches compared to P. apodus. The efficiency indexes, together with data on microhabitat selection, indicated both species moved non-randomly through the environment, selecting appropriate habitat patches and maintaining body temperatures close to the set point range whilst avoiding the dangerously high body temperatures that occur during the hotter months. During the winter months from November to February, the second and third quartiles of the model temperatures fell below the set point range temperatures of both species. This corresponded with their dormant period. In general, the results emphasise the importance of habitat diversity and integrity in reptile ecology and for their conservation. Full article

(This article belongs to the Section Animal Diversity)

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16 pages, 9515 KB

Open AccessArticle

A New Species of the Genus Pseudoparamenexenus (Phasmatodea: Lonchodidae: Necrosciinae) and Its Phylogenetic Relationships

by Yanting Qin, Zhenzhen Cui and Xun Bian

Diversity 2025, 17(9), 637; https://doi.org/10.3390/d17090637 - 10 Sep 2025

Abstract

We describe a new stick insect species, Pseudoparamenexenus beiliuensis sp. nov., by an integrated approach using morphological and molecular data. The mitochondrial genomes of this new species and Pseudoparamenexenus yangi collected from Jianfengling, Hainan, China, were fully sequenced and annotated. Both mitogenomes contained [...] Read more.

We describe a new stick insect species, Pseudoparamenexenus beiliuensis sp. nov., by an integrated approach using morphological and molecular data. The mitochondrial genomes of this new species and Pseudoparamenexenus yangi collected from Jianfengling, Hainan, China, were fully sequenced and annotated. Both mitogenomes contained the standard metazoan gene set arranged in the ancestral phasmid order, with ATP8 showing the highest evolutionary rate, and COX1 the strongest purifying selection. Phylogenetic analyses were conducted based on 13 protein-coding genes, revealing the two species form a well-supported sister-group relationship. The systematic position of the genus Pseudoparamenexenus was resolved as follows: ((Pseudoparamenexenus beiliuensis sp. nov. + Pseudoparamenexenus yangi) + (Neohirasea stephanus + (Neohirasea japonica + Neohirasea hongkongensis))) + ((Pachyscia longicauda + Acanthophasma brevicercum) + ((Sinophasma brevipenne + Micadina phluctainoides) + (Micadina brevioperculina + Micadina brachyptera))). The discovery of this species not only advances our understanding of the genus Pseudoparamenexenus but also addresses knowledge gaps concerning the diversity of stick insects. Full article

(This article belongs to the Section Animal Diversity)

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2 pages, 142 KB

Open AccessCorrection

Correction: Lone et al. Phylogenetic Relationships in Earthworm Megascolex Species (Oligochaeta: Megascolecidae) with Addition of Two New Species. Diversity 2022, 14, 1006

by Azhar Rashid Lone, Samrendra Singh Thakur, Pooja Tiwari, Samuel Wooster James and Shweta Yadav

Diversity 2025, 17(9), 636; https://doi.org/10.3390/d17090636 - 10 Sep 2025

Abstract

In the original publication [...] Full article

16 pages, 2493 KB

Open AccessArticle

Investigation of Insect Diversity in the Restoration Area of Yimin Surface Mine in Inner Mongolia

by Yuzhen Zhang, Yawen Yang, Rui Shi, Xintian Li, Haoran Yan, Xue Bai and Shaobo Gao

Diversity 2025, 17(9), 635; https://doi.org/10.3390/d17090635 - 9 Sep 2025

Abstract

Elucidating the relationship between changes in insect assemblage structure and diversity and the number of years of ecological restoration will help us evaluate the effectiveness of ecological restoration. Our objective is to investigate the response of the structure and diversity of insect communities [...] Read more.

Elucidating the relationship between changes in insect assemblage structure and diversity and the number of years of ecological restoration will help us evaluate the effectiveness of ecological restoration. Our objective is to investigate the response of the structure and diversity of insect communities in the ecological restoration area of Yimin Surface Mine in Inner Mongolia to different restoration years (1 year, 4 years, 7 years) by monitoring in 2018, 2021, and 2024. A total of 1282 insect specimens were collected using sweep-netting methods, representing 70 species from 46 families across 8 orders. The results demonstrated that as restoration progressed, insect taxa significantly increased from 25 to 55 species (p < 0.01), with key functional groups (Coleoptera and Lepidoptera) showing marked richness enhancement. α-diversity indices (Shannon–Wiener and Margalef) significantly increased, while the Simpson dominance index decreased, indicating a more homogeneous species distribution. β-diversity analysis revealed reduced compositional dissimilarity among plots during later restoration stages, reflecting enhanced assemblage stability. The trophic structure shifted from phytophagous dominance to stabilized proportions across all feeding guilds, signaling food web maturation and ecosystem development. Overall, local ecological restoration projects had a significantly positive effect on insect survival and biodiversity development. Our research addresses a gap in faunal assemblage studies of coal mine rehabilitation zones. Full article

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15 pages, 25472 KB

Open AccessArticle

Mitogenome Diversity and Phylogeny of Felidae Species

by Jiaojiao Yu, Xiang Yu, Wenlei Bi, Zusheng Li, Yanshan Zhou, Rui Ma, Feifei Feng, Chong Huang, Jiang Gu, Wei Wu, Guanwei Lan, Long Zhang, Chao Chen, Fei Xue and Jiabin Liu

Diversity 2025, 17(9), 634; https://doi.org/10.3390/d17090634 - 8 Sep 2025

Abstract

As apex predators, felids (Felidae) face unresolved phylogenetic controversies due to their recent rapid speciation and remarkable morphological conservatism. Previous studies, often relying on a limited number of genetic markers, were constrained by insufficient data and conflicting phylogenetic signals, leaving these disputes unresolved. [...] Read more.

As apex predators, felids (Felidae) face unresolved phylogenetic controversies due to their recent rapid speciation and remarkable morphological conservatism. Previous studies, often relying on a limited number of genetic markers, were constrained by insufficient data and conflicting phylogenetic signals, leaving these disputes unresolved. Therefore, establishing a robust phylogenetic framework based on larger-scale genomic data is crucial. This study integrated complete mitogenomes from 37 species representing all major felid genera to characterize genomic diversity, selection pressures, and phylogenetic relationships. Results revealed conserved gene content and arrangement patterns but significant intergenic variation in nucleotide composition, with the light-strand encoded ND6 exhibiting pronounced strand-specific bias. Nucleotide diversity was highest in ND4L (Pi = 0.132) and ATP6 (Pi = 0.131), suggesting their utility as novel markers for species delimitation and population studies. Selection pressure analysis indicated strong purifying selection on cytochrome oxidase subunits (e.g., COX1 Ka/Ks = 0.00327) but relaxed constraints on ATP8 (Ka/Ks = 0.12304). Phylogenies reconstructed from the complete 13PCGs + 2rRNAs dataset (showing high congruence between maximum likelihood and Bayesian methods) clearly delineated Felidae into two primary clades (Pantherinae and Felinae), confirming monophyly of all genera and positioning Neofelis nebulosa as the basal lineage within Pantherinae. Crucially, exclusion of ND6 (12PCGs + 2rRNAs) yielded topologies congruent with the complete 13PCGs + 2rRNAs dataset, whereas single-gene or limited multi-gene datasets produced inconsistent trees (particularly at genus-level nodes). This demonstrates that near-complete mitogenomic data (≥12PCGs + 2rRNAs) are essential for reconstructing robust felid phylogenetic frameworks. Our study provides insights into carnivoran mitogenome evolution. Full article

(This article belongs to the Section Animal Diversity)

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38 pages, 15935 KB

Open AccessArticle

New Stonefly Synonymy Changes Conservation Outlook: 100-Year-Old Specimens and Integrated Taxonomy Clarify Species Concepts and Distributions of Several Eastern Nearctic Stripetails (Perlodidae: Isoperla Banks, 1905)

by Scott A. Grubbs, Chris J. Verdone, Luke W. Myers and R. Edward DeWalt

Diversity 2025, 17(9), 633; https://doi.org/10.3390/d17090633 - 8 Sep 2025

Abstract

Isoperla powhatan Szczytko & Kondratieff, 2015 is newly proposed as a junior synonym of I. myersi Szczytko & Kondratieff, 2015 based on an integrative analysis of morphological and molecular phylogenetic data. Revised descriptions of the adult male, adult female, and mature egg of [...] Read more.

Isoperla powhatan Szczytko & Kondratieff, 2015 is newly proposed as a junior synonym of I. myersi Szczytko & Kondratieff, 2015 based on an integrative analysis of morphological and molecular phylogenetic data. Revised descriptions of the adult male, adult female, and mature egg of I. myersi are presented, together with the first description of the final instar larva. Comparative morphological observations of I. arcana Beaty, Holland & Lenat, 2017 and I. holochlora Klapálek, 1923 improve the taxonomic concepts of each species and provides support for a new species group containing the three taxa. The new synonymy adds 868 unique locations from nine USA states to the distribution of I. myersi, including 826 from North Carolina Department of Environmental Quality samples. This new synonymy has dramatically changed our understanding of the overall range and frequency of occurrence of I. myersi populations, which will impact any impending conservation status assessment of this species. This study includes color light microscopy images, scanning electron micrographs, a substantial amount of new occurrence data, and distribution maps for each species. Full article

(This article belongs to the Section Animal Diversity)

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9 pages, 1260 KB

Open AccessCommunication

Log, Rock, and a Gradient of Choice: Speleomantes strinatii Adjusts Shelter Use with Stream Distance

by Giacomo Rosa, Andrea Costa and Sebastiano Salvidio

Diversity 2025, 17(9), 632; https://doi.org/10.3390/d17090632 - 8 Sep 2025

Abstract

Understanding microhabitat preferences of endangered species and the drivers involved in this selection are crucial for understanding their ecology and implementing conservation actions. This issue gains more importance with amphibians, which are known to be constrained by specific environmental conditions and are among [...] Read more.

Understanding microhabitat preferences of endangered species and the drivers involved in this selection are crucial for understanding their ecology and implementing conservation actions. This issue gains more importance with amphibians, which are known to be constrained by specific environmental conditions and are among the most threatened organisms globally. We assessed shelter preference of Speleomantes strinatii in three different contiguous habitats (mixed broadleaf forest, transitional mixed-chestnut and a chestnut forest used both for fruit and coppice), located at different distances from an Apennine first-order stream. We placed 22 plots in these three habitats and searched for salamanders under the potential available shelters (logs and rocks). Using a Bayesian generalized linear mixed-effects model, we assessed the role of distance from watercourse, shelter type and area in salamanders’ microhabitat selection. As expected, salamanders were mostly found in the plots near the stream. However, stream distance seemed to not be a crucial driver of amphibians’ detection under a shelter. Indeed, salamanders increasingly used wood shelters at greater distances from the stream relative to rocks, suggesting that logs seemed to compensate for the distance from the stream. In the managed habitat, trunks and branches cut during coppicing or chestnut harvest, as well as naturally fallen wood, were often left on the ground, thereby increasing the availability of shelter for salamanders. Our findings highlight how properly managed forests may enable the persistence of forest salamanders, even in human-exploited environments, representing a cost-effective solution for maintaining soil and forest biodiversity. Full article

(This article belongs to the Section Biodiversity Conservation)

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